TCONS_00025042 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025042
Unique NameTCONS_00025042
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1986

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025042 ID=TCONS_00025042|Name=TCONS_00025042|organism=Clytia hemisphaerica|type=transcript|length=1986bp
TTGAATTTACCACTCAAAGTTCTCAATaaactttcaaaagacAAATTGAT
GCATGTAAGTCCAAATGGTGTCGGTTTCGTAACTGCAAACGTCAAACGAG
GGATTTTACCAAGAATGTTGGAGGACATTTTGAATACGCGCATCATGGTC
AAAGGTGCTATGAAGAAAGCTAAAGAGGACAAGGTCCTGCACCGAATGTT
GGATTCGCGACAACTTGGACTGAAATTGATTGCCAACGTTACTTATGGTT
ACACCAGCGCCAATTTCTCAGGCAGAATGCCTTGCATTGAGaTCGGTGAC
AGTGTAGTGCGAAAGGCGCGTGAGACATTGGAACGAGCTATCCATCTGGT
CAACACAACTGCCAAGTGGAATGCTAAAGTAGTCTATGGAGATACTGACA
GTATGTTCATCCTGGTTAAGGGAGCAACGAAAGAAAGAGCTTTCGAAATC
GGTCAGCAGATTGTGAATGAAGTCACCGCAGCAAACCCTAAACCTGTCAA
ACTTAAATTCGAAAAGGTTTATCAGCCATGTGTTTTGATCACCAAGAAAC
GATATGTTGGTTACAGTTATGAAACTCTGGACCAAAATGAACCAATTTTC
GATGCCAAGGGAATCGAAACTGTTCTAAGAGATAATTGTCCAGCTGTTGA
AAAGCTTATGGAAAAGTCGATACGTATTCTGTTCGAAACCAAAGATGTGA
GCTTGATCAAATCTTACGTCCAAAAGCAACTGATGAAAATTCTAGAAGGA
AAGACATATTTGAAAGAGTTTATCATTGCAAAAGAATACCGTGACATGAA
CACTTATAAACCAGGCGCATGCGTACCAGCGCTTGTGCTGACCAGgaaaa
tgttaaaacaagACAGGCGATCAGAACCTCGTACAGGTCAACGTGTTCCT
TATGTTGTGATACATGGAAGCCCTGGGTTACCACTGATACAATTAGTTCG
ACCGCCGCAAGATTTAGTTGATAATTCAGGACTCCGAATCAATGACGTGT
ATTATATCACTAAACAGATCTTACCTGCGTTGTCGCGTATCTTTTCGTTG
CTCGGTGTTAATGTCAACAAATGGTACACAGATTTGCCGAAGATGAACAG
AATCCATGATCGAGATATTGACCACTCCACAAACAAAAAGGGAACCATTT
CGCATTATTTTGGAAGTCAGCACTGTCCAATATGTCAACAGCTGACTACT
CTACGAATCTGCCGTTCGTGTCAACAACAGCCACAAATGACCGTTGTCCA
TCTTACATCGCGTATTTGGAATACCGAAAAACGATTTATAAATCTACTTA
AGCCTCTGTGTGTGAAATTCCACGTTCCACTGGTATGTTACTGGACATTG
TCAAATCATCAAATCACAAAGGTGGTATTGAAATCAcattcatttatatt
tttcttctaTAATGTTGCGACTCTTACTCTGGCTGCCAAGATGTAGTAAA
ATATCCACAGTGCATTGTTTTTTATCGTAACTTAAAATGTTGATCTCAAA
GCTCACCATATTTTAAATTGTCAATCCATTCAACTCCATGTGGTAAATTT
GAATATCCGGAGGTGATTCGTACTTTCTGAAATGTTTGATGGTTCTCATT
GAGAACTCGTGTCCCTTTTAGTTGTCCGTCCACCCAAAATGTGACGTAAA
GTTTGCCATCAGTTGGATCGCGTTGCTGTTGCATCTGACATTTGATGTAA
GTGTTGAGTGAGTTTGTTAGATCATGATGTGTTAATAGTTGTGCCCCACT
TGTCGATGTCCATGTTCTGACATTCAATGCAAGTGCGTTGGACGGTCTTT
GAATTCTCACGAAGTTTTTTTCACGATTGTTTGTTTCTTGGTTTATTCCA
CCAGAAAACATAAGAATGAAAAGCCAATAGTTTGGTTGGACACTGTACGT
TAATTGGTAATCAAAAGATACAAACCATTCCTCTGGCGGCCAATTATTGA
TCTCTTTGAACAGCTCTTCTTCGCGTGGTACATAAA
Run BLAST on NCBI

transcript from alignment at sc0000517:152809..164559+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025042 ID=TCONS_00025042|Name=TCONS_00025042|organism=Clytia hemisphaerica|type=transcript|length=11751bp|location=Sequence derived from alignment at sc0000517:152809..164559+ (Clytia hemisphaerica)
TTGAATTTACCACTCAAAGTTCTCAATGTAAGTCTTTTAAACAAAGAcac
tttttcaaatataaggAGCTGCGTTTCTTTTGCTTTAACCAATCTGCTTT
TAAACCTTCGTGCatcttaaggggggggggcttgatTCCAAAACTTTACA
AATCATCTCCGATTATCActagattgcttgaaattttaagatgCGTCTAC
CAGTAAGAAACAAGAAGATGCTCAAATGGTTAAGGCGAATTCGATACTAt
cgactacacgttttttttaaaagaacatctaaaatttttgaagccttcgc
tttaagcctaaaaatgttcttatcatgctcttattttcaccattttgtga
atatttttgtccatttttctaagaaattgggtgttctagggtctacaaag
ccttagaatgttcttaacttgttcttaacaatttTTGCCCTCGAAgcctg
ttcttatatagtttattctaataaaaaaacgtgtatccagAGAAAGTGTT
CTTGTgtgtaattttgaaattttctttctttaaaccTTACACACTTTCAA
AAGATGCTCGAAGTGTTAAGGATTGGGGGCGAATTCAATACTATTGACTA
ACCATAGAATTTGTGTAACTTTAAATATTCATTCCTCTGAAACCttagaa
actttcaaaagacAAATTGATGCATGTAAGTCCAAATGGTGTCGGTTTCG
TAACTGCAAACGTCAAACGAGGGATTTTACCAAGGTAAataactttttac
tttttaatgaaaatcttggtggtagtagcaaatattcacttaacttttta
atataatttttattgcCCCTAAATTCCAGTAATTAATTTAGAAATCAAAC
GCGAATACTACTCATACGTAAGGCTGTCtcttggtggtagtagcaaatat
tcatataactttttaatataatttttattgcCCCTAAATTCCAGTAATTC
ATTTAGAAATCAAACGCGAATACTACTCATACGTAAGGCTGTCtcttggt
ggtagtagcaaatattcatataattttttaatataatttttattgcCCCT
AAATTCCAGTAATTCATTTAGAAATCAAACACGAATACTACTCATACGTA
AGGCTGTCtcttggtggtagtagcaaatattcatataattttttaatata
atttttattgcCCCTAAATTCCAGTAATTCATTTAGAAATCAAACGCGAA
TACTACTCATACGTAAGGCTGTCtcttggtggtagtagcaaatattcata
taattttttaatataatttttattgcCCCTAAATTCCAGTAATTCATTTA
GAAATCAAACACGAATACTACTCATACGTAAGGCTGTCtcttggtggtag
tagcaaatattcatataattttttaatataatttttattgcCCCTAAATT
CCAGTAATTCATTTAGAAATCAAACGCGAATACTACTCATACGTAAGGCT
GTCtcttggtggtagtagcaaatattcatataattttttaatataatttt
tattgcCCCTAAATTCCAGTAATTCATTTAGAAATCAAACACGAATACTA
CTCATACGTAAGGCTGTCtcttggtggtagtagcaaatattcatataatt
ttttaatataatttttattgcCCCTAAATTCCAGTAATTCATTTAGAAAT
CAAACGCGAATACTACTCATACGTAAGGCTGCCTGTTGCTGACGATGGTT
CGAATTTCAGAttaatttacacgttttttttaaaaaaacaagagaaaaaa
tGAGTCTcagattttggcaaaaatttgagagaaaaataagaacactcCCA
GCATCAGATTTTAGTAAGTGGCTAAAGGAAATACTGATATTAAGCCACTT
TTAAGACAACAAGTTGTAAATGTTAGAACCTGAAAATCCTAACCTAAACC
TAACTAAATATGAAGGTATTGTTTCGTTTCTTACGTTTGAAGAGTTACTT
GAGATATGTTGTTATTTAGAATGTTGGAGGACATTTTGAATACGCGCATC
ATGGTCAAAGGTGCTATGAAGAAAGCTAAAGAGGACAAGGTATGCTTTTC
CATTTCAAAATAACCGAATCCTCAAAATCCTCTTTTTTGNGTTGTTATTT
AGAATGTTGGAGGACATTTTGAATACGCGCATCATGGTCAAAGGTGCTAT
GAAGAAAGCTAAAGAGGACAAGGTATGCTTTTCCATTTCAAAATAACCGA
ATCCTCAAAATGCTCTTTTTTTTGTTGCATGAAATCGGAGCAAGCCTTCC
TTCAATTCCTTCCTTTTAAACGAGGCTTATCGTTTGGAAAGTGGCCGTAG
TATGagggtagagcatccagctatgGTGCGCAAAGTTATGGGTTCGACGC
TCAGCCGGCTCAtatcaaagattcccaaaaagGTATTTGATgcttctctg
cttgatgctcagcaagtAAAAAGACGGTTCAAGGTTTaatggagaaatcc
agggaaaggaatAGTGCCCTCCattaccttcgggtagatagctagaGAAA
AAGGAGCCTTcaggtcgccctcgactgcgctTCGgtctcaaattttcatt
ttttttttttgttcacttttaaCTTCCCTCTATTTCTTTTTGAAGGTCCT
GCACCGAATGTTGGATTCGCGACAACTTGGACTGAAATTGATTGCCAACG
TTACTTATGGTTACACCAGCGCCAATTTCTCAGGCAGAATGCCTTGCATT
GAGGTGCAGTACACTTGTCGTCATATTGAAACCAAGGAAACAAGGAGTCT
GCaattaaaatttaagaaatattcgtgtcaaaaataactttttcaagtGT
TGAAACAATCTTCAGTTAAAACAGTGCTTTTGGGATAAAAAGAAAAGGAC
CAATATCAAAACTGaggcaatagacgatatcggcttaacgtgaaaactca
gatttaacCTCCGaaaattgcccacaatgctttgcgcggaaaaataGTTC
ACGGAGAATCTTTTTCCGCACAatgcattgtggggaattctcaggcgtca
aatctgagttttaaaTGTGAaaccgatatcgtctattatcatcatcaaat
caagaaattaatttttgaaattattttgaatttcagaTCGGTGACAGTGT
AGTGCGAAAGGCGCGTGAGACATTGGAACGAGCTATCCATCTGGTCAACA
CAACTGCCAAGTGGAATGCTAAAGTAGTCTATGGAGATACTGACAGGTCA
GAAGATTAACGCTACCAGAAGAGTTTTTAAGGAAAAGAAAGAACGACTTT
GCTGTGAAGAAGCAAAAAATTTGACAAGTCATTTTTTTGACTGTGCTTTG
TCAGCATATGATGCGAGTTTGCTTTTGTAGGTCATTAAAAAGAATGTCTT
TAAGATAAGAGCTTTGATATGTAAGAATAATAATGATCATTAAATGAGTT
TGGTGATAAAGAACTTTGTGTCTGATGAACCTGTAGACTGTTGTCATTAT
AAAGTTGATTTGCTTTCGTTCCGCCTTCAGTATGTTCATCCTGGTTAAGG
GAGCAACGAAAGAAAGAGCTTTCGAAATCGGTCAGCAGATTGTGAATGAA
GTCACCGCAGCAAACCCTAAACCTGTCAAACTTAAATTCGAAAAGGTAgg
ataatcttttttttctctattaGTTGATCATTCTCTAccgcttttttata
atttttcgtTCGATCATTTGCCATGAAACCAAACTAAATACTAATCGAAT
ATAAacaaactagccggtacccggtgttgcacgccggttaagctgtagct
gaacgcactaaaagtcctttggataaAAAAAGGAATCTCTTCAAAGTATG
ACTCCAGCCTTCCCCCGGGTGTCTTAACtcttaaccatatttggattgtG
TAGTGTCCccgcccgggggggggcacttaggcaaaattgggtacggggac
gtgccggtggtcccttttttaggctctgaagatatctgacagggtcttaa
atttacttattttcaagatttaatctgacagggtcgacttttggtaaTAT
TTGACAATTTTCGGGGTggaaattatttcaattttgcgtctgattttagt
cattttggccactttcagggtgaaaatcggaaactttttttgatttttct
ttctgacagggtccaaaaTTTACCAGATACCCGATATAATTCagatctga
cagggtccattttGTAAACTCcagtgtaaatatttttttcgcttTGCTCG
CGTTAAATACACCGTTCAGTTCTCGATAACTAGAAAAGATTGTATGTCAT
GGTAGAGGAGTggaatgtagaaatgacaattcttcaggaaaaagcTGGAC
AGCTTAtcagattgaaaaaaataagacaattttaagttgcttttttaaac
ccttgtcataacctttcaaatttaaacatttaaaacgatgatgtacacac
tttttaacagtaacAACGACTTGGGTGTTTTTATGTGAAGAAAGAGGTGG
ACTGATTCTCACATTCtccttttgcttttttttttatctccCTTTGAAGG
CTGTTGTTGTcgacaaagattttttttatgttttgatttacatttgaaat
gttcttttctataaaaggaatttgttttgttttgaaaagaattcgaatgt
cattaataaatacgatcgttaaatatattcgaaaacatttaaaacaaaag
aaaagaaaaaaacaggaCCGGGCAAggctgggcagaaattaaaattacta
aaatagcgtattttttttccgtcagcggtCTAAACCCAACTTCAGCGGTC
GAAACCCAGCTTAGCGGTCGAAGCCCAACCTAACGGCCGAAACCCATTTT
ACCGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCGACCGGTAAAATGGG
TTTCGGCCGTTAGGTTGGGCTTCGACCGCTAAGCTGGGTTTCGACCGCTG
AAGTTGGGTTTAGaccgctgacggaaaaaaaatacgCCACGGcgaaatgt
agatgggccttaaatttcaaaacaagcttATCGAGAAGAAAAagttgctt
gcgaaaacgaaagtgacacacagacagaaaacaaacaaacaaacagacat
acagactacggctattaatatatagacaaGATACTAGACccaagtaaaat
tcaaaaatagttttctttcaataaaagtacATGACTTAAAGTTTCGTGCT
TCTGCACTTATACAAGAGAAATCCAATCTAAAATATCTGCGTGCAAAAAG
TTAACAAATgtcttttccccgacgaagttttccccgataaggtaattaaA
TTTGTCAAGGGTTAATAAAAGCATGTAAATTCAGTCTTCAGTCCTTCTAT
TCCGAAAATTAACCCTCGAGCTTTGATATGAGCAATCGTTTATATAGAGA
TTCTTCTCAATTTGCAATGAAGCTATGTCGTCCATTTACCATTATAAGTG
TTGCGGTACTCTTTAAGATTCATAGTTTTCGGGCGatttttgcccttttt
cgcgaaagtttctgccaagtAAGAAATTACACGGGAAATTCACGAAAGTT
TTTTCCGcgaaaaatacacttttttgctattttatactcagttttcagtt
tttgtgcTTTTTTTTTTACCTGCAAATAGAAATGATATTCTAAATGTCGC
GTAAGTTATATCCGCTAAATTCGTTCCATGAATTCGCgaaatttcacgat
tttgtaacctcgcgaaagtttctgcccgcaaTATTTTCTGCTCTTAAGGA
CTCTggccatagtgaatttttcataattgccgtgtttaaaatgtgttttc
tgactgatataaccaacaaaactatggcatgtaatacattttctgttaga
caaactattcctgaatctgaaaattcaaaaattgcattgaaaaaatttga
tgaagaagaaaatgaagactttagcgaggaagagtatttcaactttgaag
agcttagtttcggcgaagaaaaacattttgaaaatttttttgcagtagAT
GATGTATCTTTTACTGAACATTAAAAACTtttgcagaaaatttttgtaaa
tgcttctttgtctcgaaatcttcaaaatagtggtttttcataaatttttc
atctggattttgcttaaaaaaacagtcataaNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttaaaactaagc
actttttgtaaaagagggtgatgcaacatattattaacatctttttaaag
ttcataacgtcatttttgcaattaaattcttaattacccttaagggattc
gattaaaagcaatttataaaaaattctttgttagaagtgttaaggaacct
tttatataacttttatgttcaaataccaaaatcaatttttggactatgat
cagagcccttaaagtaCTCTTTTGGTATCATTGTTACAAATTTAAAGATC
CTTAAATCCAAGCTCCCCAAACAAATCTTGAACTACATACTAACTACTCA
TTTCGCAAAAATAACTTCTTGCGACCATTTCGTATTGTTAGGTTTATCAG
CCATGTGTTTTGATCACCAAGAAACGATATGTTGGTTACAGTTATGAAAC
TCTGGACCAAAATGAACCAATTTTCGATGCCAAGGGAATCGAAACTGTTC
TAAGAGATAATTGTCCAGCTGTTGAAAAGGTTAACGAATTAATACATTTT
ACTGCTTTATTGGTTCTTCTTTTCTTTGAACTCTACTTAAAGAGAGATTA
ATGATTTAACACCATTTTTACTgttttaaatatatatttttgacaACTAC
CCATTTTtccataagaacatccaaaaaaaaaatttaagtcttcagatttt
ctttttggttttgaGCCTTTATATTATATTCTTAATAATAATATTCTTAa
agttttcaccattttgtgagtatttttgtgggATATCCTGAGAAATTTAG
TGTTTTGAGTCCGCGATAccttaaaatcttcttaacttgttcttgatatt
ttgatagccaaaatattaagaataagttaagaagattttaaggCATCGCG
GCCATATGTTCTTCATAGTGTAAATACTGAACCTATTGCTCAACTTACAG
CTTATGGAAAAGTCGATACGTATTCTGTTCGAAACCAAAGATGTGAGCTT
GATCAAATCTTACGTCCAAAAGCAACTGATGAAAATTCTAGAAGGAAAGA
CATATTTGAAAGAGTTTATCATTGCAAAAGAATACCGTGACATGAACACT
TATAAACCAGGCGCATGCGTACCAGCGCTTGTGCTGACCAGGTAAAATTG
CAGGTCAAATTTAATAGTACCGAATTTCAACAATGTGGTCTTTTTGGTGT
GTTTATCGGTTCATTTGTCGAAATTTTTCAGTGCCTTACATTCAAAAAAC
TATATTTCATAAATGCTATAGTAGGTATTTAACATCTTATCGCACTTATT
TATTAGTTATCAAGAGTTTAACGCGGGAAAATTTAACATATTtgattctt
tcaaaaatttatatatCACGGCAAGTTCGATGTTCGTGAGAGTTAAATGG
GCTAGGGATGGAGACCTGTCAGCTTTTAATATTTCCCTAGACCAATAGCT
GCAAGAATCGTCAAAATTTCAATGCATCAACTTACTTCTGAGCCTATAAT
GAATGTATGGACTAATTGTCAAAATTAGGCTATTCAAAAAATCACCACTA
ACAACATCTCTGCTCTTTTAataaacaaaaatggctgttctccttttcca
ggaaaatgttaaaacaagACAGGCGATCAGAACCTCGTACAGGTCAACGT
GTTCCTTATGTTGTGATACATGGAAGCCCTGGGTTACCACTGATACAATT
AGTTCGACCGTAAGATTGATTCTTCCATTATGTAGGtttttgttataatt
ttgaATGTTGGAAGGCTTTGGCAAAGATAGTAATCTCCTGAAAAGTGAAA
TAGATCCGCATCAAGTATTTTTACCTTTTCTTATTACgcgttttttaaag
aacatataaaatttttgaaatgctcttaaaattgaccgtttttgagtttt
tcttaTATGCTCTAGTATAGTTTTGCTCTTATAAATAAATGTGTAATTAA
ATGGCGGAAGGCTTCGGCAGAGATAACGCTCTCCTACGAAGTGGAATGAA
TTCGCATCgagtattttcactttttcttatcACATCTGTTTCTTTCAGGC
CGCAAGATTTAGTTGATAATTCAGGACTCCGAATCAATGACGTGTATTAT
ATCACTAAACAGATCTTACCTGCGTTGTCGCGTATCTTTTCGTTGCTCGG
TGTTAATGTCAACAAATGGTAAGAATGATATAGTAGGATTTTATACAGTT
ATTATTTtcttactttcaaatttttttttgaaccgACCAGATTTTGGAAA
GAaataactaggtcacagtgtggatgtaaaccacactgaaacggccgcct
tccatcacgcatcacgctcgcgaaagagcgcgcgtgCTTTATTAACGCCt
gcatgtcatctccagtacattttagattattcattgaaaacaataTTACA
ATATAGTCTTTTTTCGTGTCTCcgttattcaattccgaataaaagacatt
cagggaaaaaaagaaaaacatccgggtaatctagttaaacaaccgaaagt
aaatggtagacaaagtaatgagccaaggcaaaacgagattggcgtaccac
tatgaaagaaaccgcctccggcggtcgattaaCTTCTAAGATAAATGTTT
TAATTGAGATCGGTTAGACGTGACTATGAACATGAGCATGTCGTCAAGTT
CAGATATGGATCCAATGGATTGGAATTTAATTGAAACTTACTTCCAAGAA
AATGTTCACTTTACGAAGTATACAAGAATAACtcgaaaaggtttttttat
acTACAGTGGAGTCCCCATAAATCGAACACACGAgggaaacacaaatttg
ttcgagttatggagtaaagtttataaggctGAAGAGTCtttaaaatttgt
tcgagttaaggagccattcgagttttagaggttcgagttaaagtgaCTCC
ACTGTAATTGGATGAAATCTTAACATAAAGAATGATTTTTATGCACTCTC
AAAAAGCTTCGTGTGAacaaaaagcaattttttattgttacATAATTTGT
TTTTGCCAGGTACACAGATTTGCCGAAGATGAACAGAATCCATGATCGAG
ATATTGACCACTCCACAAACAAAAAGGTAATATCATTGATATAGTTTTTC
ACGTACCAGGCTGCTGAGATGTATATTTTAGATGACACTATNGTAATATC
ATTGATATCGTTTTTCATGTACTAGGCTGCTGAGATGTATATTTTTGATG
ACActaaaataacgaaaaaaattcatgttttgaatttttgtaaccttttt
ctCTTGGACAAAACTAACCTGTACCATTGACTACGTCTGACTACGTTCAA
ATAAAAAGCTATTTTACCAGCCCTACATCAGCTGGCACGGCTTTACAAAA
TACGGCGTTCAGTGAAAATTTACTCTAGTAGTTTTTGGAAAGTTGAGACA
AAGAGCTTTCTTACGTTGCTGAAGATTATTTCTGAAACCCATTTTAATAC
CGTTAATAAGATTTGCAGTTTGAAATTTAGCCACTGAAAATGCGAATCTc
atctcaaaaaatgaaaattaatgaaaaatgattaaaacatTTATACTTTA
AactgtaaaattaaattttacgaTGTCTATATTATTTACAATATTATTTA
CATTATATttgtgatattcatgacgtaatgttttctacggaaataccccg
gttttagccagtagtggcaaatttaaactagacaaaagttgtttaaaatt
tgccattactggcaaaaaccgggatCTTTCCGccgtgaatatcatgaatt
aataCAAGGAAAGATTGCATTTTGCTTAGCACTTGTCTTTCCGTTTGCAG
GGAACCATTTCGCATTATTTTGGAAGTCAGCACTGTCCAATATGTCAACA
GCTGACTACTCTACGAATCTGCCGTTCGTGTCAACAACAGCCACAAATGA
CCGTTGTCCATCTTACATCGCGTATTTGGAATACCGAAAAACGATTTATA
AATCTACTTAAGGTATTTTCCGATTTGACCCTTTTCTTGGGATCTTTGCA
AATTGATGGGATTTTTTTTGTCACTTCAAGGCGGACACGGATTTTTTCCA
ATCACGCTCTGTTTGTAACTTGTACAAATCACAGATATCAATAAAAGAAT
AGATGGAGCTTCTCCGTCGGTCATTTTTAATAGAGTAGCGGCACAATTTT
GCTTACACGAGCCTTTAATTTAAGCCATTTAATTACAGTGTCAAAATATT
TGAACGTTGAAAACCAAGTTTTCTATTGTAATATATTGTGGTCCGCTCAG
CGCAAACTTTGCTTCACCTTTTTTTGGCTTGGGAAAGATAGAATAGCTCT
ATTCAGTGTATGTATGGTGTTAAGactattgaatgaaaaaatttaaattt
catcataaatttcATAGCCTCTGTGTGTGAAATTCCACGTTCCACTGGTA
TGTTACTGGACATTGTCAAATCATCAAATCACAAAGGTGGTATTGAAATC
AcattcatttatatttttcttctaTAATGTTGCGACTCTTACTCTGGCTG
CCAAGATGTAGTAAAATATCCACAGTGCATTGTTTTTTATCGTAACTTAA
AATGTTGATCTCAAAGCTCACCATATTTTAAATTGTCAATCCATTCAACT
CCATGTGGTAAATTTGAATATCCGGAGGTGATTCGTACTTTCTGAAATGT
TTGATGGTTCTCATTGAGAACTCGTGTCCCTTTTAGTTGTCCGTCCACCC
AAAATGTGACGTAAAGTTTGCCATCAGTTGGATCGCGTTGCTGTTGCATC
TGACATTTGATGTAAGTGTTGAGTGAGTTTGTTAGATCATGATGTGTTAA
TAGTTGTGCCCCACTTGTCGATGTCCATGTTCTGACATTCAATGCAAGTG
CGTTGGACGGTCTTTGAATTCTCACGAAGTTTTTTTCACGATTGTTTGTT
TCTTGGTTTATTCCACCAGAAAACATAAGAATGAAAAGCCAATAGTTTGG
TTGGACACTGTACGTTAATTGGTAATCAAAAGATACAAACCATTCCTCTG
GCGGCCAATTATTGATCTCTTTGAACAGCTCTTCTTCGCGTGGTACATAA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014077XLOC_014077Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025042-exon-sc0000517-1491911889:152809..152835TCONS_00025042-exon-sc0000517-1491911889:152809..152835Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1510915933:152809..152835TCONS_00025042-exon-sc0000517-1510915933:152809..152835Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1575043694:152809..152835TCONS_00025042-exon-sc0000517-1575043694:152809..152835Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1491911889:153457..153542TCONS_00025042-exon-sc0000517-1491911889:153457..153542Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1510915933:153457..153542TCONS_00025042-exon-sc0000517-1510915933:153457..153542Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1575043694:153457..153542TCONS_00025042-exon-sc0000517-1575043694:153457..153542Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1491911889:154911..154980TCONS_00025042-exon-sc0000517-1491911889:154911..154980Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1510915933:154911..154980TCONS_00025042-exon-sc0000517-1510915933:154911..154980Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1575043694:154911..154980TCONS_00025042-exon-sc0000517-1575043694:154911..154980Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1491911889:155404..155511TCONS_00025042-exon-sc0000517-1491911889:155404..155511Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1510915933:155404..155511TCONS_00025042-exon-sc0000517-1510915933:155404..155511Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1575043694:155404..155511TCONS_00025042-exon-sc0000517-1575043694:155404..155511Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1491911889:155895..156004TCONS_00025042-exon-sc0000517-1491911889:155895..156004Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1510915933:155895..156004TCONS_00025042-exon-sc0000517-1510915933:155895..156004Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1575043694:155895..156004TCONS_00025042-exon-sc0000517-1575043694:155895..156004Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1491911889:156289..156403TCONS_00025042-exon-sc0000517-1491911889:156289..156403Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1510915933:156289..156403TCONS_00025042-exon-sc0000517-1510915933:156289..156403Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1575043694:156289..156403TCONS_00025042-exon-sc0000517-1575043694:156289..156403Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1491911889:159900..160037TCONS_00025042-exon-sc0000517-1491911889:159900..160037Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1510915933:159900..160037TCONS_00025042-exon-sc0000517-1510915933:159900..160037Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1575043694:159900..160037TCONS_00025042-exon-sc0000517-1575043694:159900..160037Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1491911889:160459..160649TCONS_00025042-exon-sc0000517-1491911889:160459..160649Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1510915933:160459..160649TCONS_00025042-exon-sc0000517-1510915933:160459..160649Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1575043694:160459..160649TCONS_00025042-exon-sc0000517-1575043694:160459..160649Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1491911889:161110..161217TCONS_00025042-exon-sc0000517-1491911889:161110..161217Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1510915933:161110..161217TCONS_00025042-exon-sc0000517-1510915933:161110..161217Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1575043694:161110..161217TCONS_00025042-exon-sc0000517-1575043694:161110..161217Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1491911889:161557..161676TCONS_00025042-exon-sc0000517-1491911889:161557..161676Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1510915933:161557..161676TCONS_00025042-exon-sc0000517-1510915933:161557..161676Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1575043694:161557..161676TCONS_00025042-exon-sc0000517-1575043694:161557..161676Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1491911889:162518..162584TCONS_00025042-exon-sc0000517-1491911889:162518..162584Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1510915933:162518..162584TCONS_00025042-exon-sc0000517-1510915933:162518..162584Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1575043694:162518..162584TCONS_00025042-exon-sc0000517-1575043694:162518..162584Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1491911889:163309..163470TCONS_00025042-exon-sc0000517-1491911889:163309..163470Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1510915933:163309..163470TCONS_00025042-exon-sc0000517-1510915933:163309..163470Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1575043694:163309..163470TCONS_00025042-exon-sc0000517-1575043694:163309..163470Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1491911889:163876..164559TCONS_00025042-exon-sc0000517-1491911889:163876..164559Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1510915933:163876..164559TCONS_00025042-exon-sc0000517-1510915933:163876..164559Clytia hemisphaericaexon
TCONS_00025042-exon-sc0000517-1575043694:163876..164559TCONS_00025042-exon-sc0000517-1575043694:163876..164559Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000517supercontigsc0000517:152809..164559 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.85159	1.22112	0.428321	0.537402	0	0	0.145864	0	0.0612945	0	0	0	1.50888	1.70889	1.3027	1.69811	2.54819	1.37263	2.47597	1.76527	1.54069	1.79887	1.07833	1.24334	0.0890031	0.0132545	1.08365	0	1.5152	0.807933
Blast
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BLAST of TCONS_00025042 vs. Swiss-Prot (Human)
Match: REV3L (DNA polymerase zeta catalytic subunit OS=Homo sapiens GN=REV3L PE=1 SV=2)

HSP 1 Score: 583.178 bits (1502), Expect = 0.000e+0
Identity = 278/450 (61.78%), Postives = 347/450 (77.11%), Query Frame = 1 
Query:    1 LNLPLKVLNKLSKDKLMHVSPNGVGFVTANVKRGILPRMLEDILNTRIMVKGAMKKAKEDKVLHRMLDSRQLGLKLIANVTYGYTSANFSGRMPCIEIGDSVVRKARETLERAIHLVNTTAKWNAKVVYGDTDSMFILVKGATKERAFEIGQQIVNEVTAANPKPVKLKFEKVYQPCVLITKKRYVGYSYETLDQNEPIFDAKGIETVLRDNCPAVEKLMEKSIRILFETKDVSLIKSYVQKQLMKILEGKTYLKEFIIAKEYRDMNTYKPGACVPALVLTRKMLKQDRRSEPRTGQRVPYVVIHGSPGLPLIQLVRPPQDLVDNSGLRINDVYYITKQILPALSRIFSLLGVNVNKWYTDLPKMNRIHDRDIDHSTNKKGTISHYFGSQHCPICQQLTTLRICRSCQQQPQMTVVHLTSRIWNTEKRFINLLK-----PLCVKFHVPLV 1335
            L +P  +L ++  D  + VSPNGV FV  +V++G+LPRMLE+IL TR MVK +MK  K+D+ L RMLD+RQLGLKLIANVT+GYTSANFSGRMPCIE+GDS+V KARETLERAI LVN T KW A+VVYGDTDSMF+L+KGATKE++F+IGQ+I   VTA NPKPVKLKFEKVY PCVL TKKRYVGY YETLDQ +P+FDAKGIETV RD+CPAV K++E+S+++LFET+D+SLIK YVQ+Q MK+LEGK  +++FI AKEYR   +YKPGACVPAL LTRKML  DRRSEP+ G+RVPYV+I+G+PG+PLIQLVR P +++ +  LR+N  YYITKQILP L+RIFSL+G++V  WY +LP++++           +KGTIS YF + HCP+C  LT   IC  C+ QPQ   V L   I   E++   L+K       C   H+P V
Sbjct: 2653 LRVPPDLLYQVRHD--ITVSPNGVAFVKPSVRKGVLPRMLEEILKTRFMVKQSMKAYKQDRALSRMLDARQLGLKLIANVTFGYTSANFSGRMPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLLKGATKEQSFKIGQEIAEAVTATNPKPVKLKFEKVYLPCVLQTKKRYVGYMYETLDQKDPVFDAKGIETVRRDSCPAVSKILERSLKLLFETRDISLIKQYVQRQCMKLLEGKASIQDFIFAKEYRGSFSYKPGACVPALELTRKMLTYDRRSEPQVGERVPYVIIYGTPGVPLIQLVRRPVEVLQDPTLRLNATYYITKQILPPLARIFSLIGIDVFSWYHELPRIHKATSSSRSEPEGRKGTISQYFTTLHCPVCDDLTQHGICSKCRSQPQHVAVILNQEIRELERQQEQLVKICKNCTGCFDRHIPCV 3100
The following BLAST results are available for this feature:
BLAST of TCONS_00025042 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
REV3L0.000e+061.78DNA polymerase zeta catalytic subunit OS=Homo sapi... [more]
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