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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025026 ID=TCONS_00025026|Name=TCONS_00025026|organism=Clytia hemisphaerica|type=transcript|length=1886bp
caaaaatctttttcaaaatatggttaaaagatacgtcacccgggagggat
aaagtcaaactttgaagataatttttctctttaattttgatttcatcatg
tttaagccaccttcccaacatccaaaggacttgcgttcagcaaacagcta
aaccggcgtgcgacgccgggcaCCGGCTAGTTCCTTTTTATTGCAatgat
ttcttttcttagaaaaacccttttttaaatcaatgaaGTTGTTTAAACGT
TTTACTTGAATCCCACacgaaaaattgaccaattctttttttcttttttt
tttcgcaaatGTATTGCTATTGAATGAAACTGGTAGTAGCGTGCTTaata
ttatttcttttttcttattctCAATAAAGATGATAAAATTCATTATATTT
CTATTGATAAACTATAAATTTTCTAAAGTAATTAATTCTATAACTTTTGG
ATGTTGAAATCGTTTTCTCCGCCATATTAATAAAACCATAACAATACCTG
TGATTACCAGGTATCCAGCGCATACATAATGGAGATAATGAAAGGAAAAA
GCTGCCGTTAGAAGACCTATGACAGCTCCCGCCCGCGAGAACGATAAGCG
GACACTCTCTGAGAAGGCTTGAATGTTTGATGGAATCAATCTAGACATGG
TATTAATCAAAAACACTTCCTCCATTATGATAACAATAGCAAACCATAAA
GTATATCCAATCCATAACAAAATACTAACCGTCGAACCGGGTCGGTATAT
TTTTAGTACCACATACATGACCTGAATACATCCTAAACACAAAACACAGA
CCATAGCTGCATAAACCAATACTTTCTCACTCATTGGATTGAACAGGACG
ATGAGGAAAATTCCAGCAGCAGTAACACCATACCCAAGGTTTATAATATT
GATTTCCAAGATCCCCCATTTCAGAAAATCGATTGAAGCCATCGGTTGCC
AGATATCGTAACAAACCATACAGTGCatgaaaaacagtgaaaaaaacaGA
ATCAGAACAACATCAACAGATCCAAATAAGATTGCAAGTGTTTTTAACAC
TCCAAACTTTTCCATCATTTCTTCGCTACCATTTTGATTATTCTCAACTA
ATGGCATTCCTTCCTTTTCTTTTGCGTCATCCAATCgcgtttcttcaaat
ttttcatcagCCAATGACGTGTCTCCCTTATTTACACCGTGCATGCGTGT
TTCTTTCATGTCATACTCTTTAGACAGGTCACTGACTCCAAATGTTGCAA
GAAATAGAacaaagataaacacaaaagttAGAATTAAACCCGATCCGTTA
GCGTACCCAATTTGAATTCCGAGAAACTTAAAATCAGCTTTAATAAATGC
GAAATTGATAACAGGGCCTATAATGAATCCCATTGCAAATGACATCCCCA
TGGCTGAGAATTGCGGTAAAAGCTCTTCTTCTGGATACGATCTAGTCAGC
TCTGACGTCATAATGGCACGTAATGAACCACCTCCACCCGAGATTAGCCG
CCCTGCAAATAAATTCCACGCTGAATAAGGGATGGTGTACAAAATGTTAC
CAATGATAATGAGAACATTCCCAACGAAGAACATGGTGTGTAGATTGCGA
TATTTGTCGAATAAATGTCCAAAAATTAAAGACATGGTGATCTGGGACAG
aataaagatggcggatatagcacTGTAGAATTCATCTACGTGTTTCGTCT
TAATGACATCTTTCAAGTACACGTACAGTGTGACGAAGGTTAAAGCGTAC
TCCATTCCCAGTGCAatagattgaaaataaaatatttttgaagttcGTTT
TCGACGCTTTTCCCAACTCTTGTAATCGAGCGTCATTTTGGTTTATTGTC
TTTGATTTCGTCGTCTTTACTCTATGatgaaatatg Run BLAST on NCBI protein sequence of TCONS_00025026-protein >TCONS_00025026-protein ID=TCONS_00025026-protein|Name=TCONS_00025026-protein|organism=Clytia hemisphaerica|type=polypeptide|length=474bp
MTLDYKSWEKRRKRTSKIFYFQSIALGMEYALTFVTLYVYLKDVIKTKHV
DEFYSAISAIFILSQITMSLIFGHLFDKYRNLHTMFFVGNVLIIIGNILY
TIPYSAWNLFAGRLISGGGGSLRAIMTSELTRSYPEEELLPQFSAMGMSF
AMGFIIGPVINFAFIKADFKFLGIQIGYANGSGLILTFVFIFVLFLATFG
VSDLSKEYDMKETRMHGVNKGDTSLADEKFEETRLDDAKEKEGMPLVENN
QNGSEEMMEKFGVLKTLAILFGSVDVVLILFFSLFFMHCMVCYDIWQPMA
SIDFLKWGILEINIINLGYGVTAAGIFLIVLFNPMSEKVLVYAAMVCVLC
LGCIQVMYVVLKIYRPGSTVSILLWIGYTLWFAIVIIMEEVFLINTMSRL
IPSNIQAFSESVRLSFSRAGAVIGLLTAAFSFHYLHYVCAGYLVITGIVM
VLLIWRRKRFQHPKVIELITLENL Run BLAST on NCBI transcript from alignment at sc0000515:85629..87514 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025026 ID=TCONS_00025026|Name=TCONS_00025026|organism=Clytia hemisphaerica|type=transcript|length=1886bp|location=Sequence derived from alignment at sc0000515:85629..87514 (Clytia hemisphaerica)
catatttcatCATAGAGTAAAGACGACGAAATCAAAGACAATAAACCAAA
ATGACGCTCGATTACAAGAGTTGGGAAAAGCGTCGAAAACgaacttcaaa
aatattttattttcaatctatTGCACTGGGAATGGAGTACGCTTTAACCT
TCGTCACACTGTACGTGTACTTGAAAGATGTCATTAAGACGAAACACGTA
GATGAATTCTACAgtgctatatccgccatctttattCTGTCCCAGATCAC
CATGTCTTTAATTTTTGGACATTTATTCGACAAATATCGCAATCTACACA
CCATGTTCTTCGTTGGGAATGTTCTCATTATCATTGGTAACATTTTGTAC
ACCATCCCTTATTCAGCGTGGAATTTATTTGCAGGGCGGCTAATCTCGGG
TGGAGGTGGTTCATTACGTGCCATTATGACGTCAGAGCTGACTAGATCGT
ATCCAGAAGAAGAGCTTTTACCGCAATTCTCAGCCATGGGGATGTCATTT
GCAATGGGATTCATTATAGGCCCTGTTATCAATTTCGCATTTATTAAAGC
TGATTTTAAGTTTCTCGGAATTCAAATTGGGTACGCTAACGGATCGGGTT
TAATTCTaacttttgtgtttatctttgtTCTATTTCTTGCAACATTTGGA
GTCAGTGACCTGTCTAAAGAGTATGACATGAAAGAAACACGCATGCACGG
TGTAAATAAGGGAGACACGTCATTGGctgatgaaaaatttgaagaaacgc
GATTGGATGACGCAAAAGAAAAGGAAGGAATGCCATTAGTTGAGAATAAT
CAAAATGGTAGCGAAGAAATGATGGAAAAGTTTGGAGTGTTAAAAACACT
TGCAATCTTATTTGGATCTGTTGATGTTGTTCTGATTCtgtttttttcac
tgtttttcatGCACTGTATGGTTTGTTACGATATCTGGCAACCGATGGCT
TCAATCGATTTTCTGAAATGGGGGATCTTGGAAATCAATATTATAAACCT
TGGGTATGGTGTTACTGCTGCTGGAATTTTCCTCATCGTCCTGTTCAATC
CAATGAGTGAGAAAGTATTGGTTTATGCAGCTATGGTCTGTGTTTTGTGT
TTAGGATGTATTCAGGTCATGTATGTGGTACTAAAAATATACCGACCCGG
TTCGACGGTTAGTATTTTGTTATGGATTGGATATACTTTATGGTTTGCTA
TTGTTATCATAATGGAGGAAGTGTTTTTGATTAATACCATGTCTAGATTG
ATTCCATCAAACATTCAAGCCTTCTCAGAGAGTGTCCGCTTATCGTTCTC
GCGGGCGGGAGCTGTCATAGGTCTTCTAACGGCAGCTTTTTCCTTTCATT
ATCTCCATTATGTATGCGCTGGATACCTGGTAATCACAGGTATTGTTATG
GTTTTATTAATATGGCGGAGAAAACGATTTCAACATCCAAAAGTTATAGA
ATTAATTACTTTAGAAAATTTATAGTTTATCAATAGAAATATAATGAATT
TTATCATCTTTATTGagaataagaaaaaagaaataatattAAGCACGCTA
CTACCAGTTTCATTCAATAGCAATACatttgcgaaaaaaaaaagaaaaaa
agaattggtcaatttttcgtGTGGGATTCAAGTAAAACGTTTAAACAACt
tcattgatttaaaaaagggtttttctaagaaaagaaatcatTGCAATAAA
AAGGAACTAGCCGGtgcccggcgtcgcacgccggtttagctgtttgctga
acgcaagtcctttggatgttgggaaggtggcttaaacatgatgaaatcaa
aattaaagagaaaaattatcttcaaagtttgactttatccctcccgggtg
acgtatcttttaaccatattttgaaaaagatttttg Coding sequence (CDS) from alignment at sc0000515:85629..87514 >TCONS_00025026 ID=TCONS_00025026|Name=TCONS_00025026|organism=Clytia hemisphaerica|type=CDS|length=1425bp|location=Sequence derived from alignment at sc0000515:85629..87514 (Clytia hemisphaerica)
ATGACGCTCGATTACAAGAGTTGGGAAAAGCGTCGAAAACgaacttcaaa
aatattttattttcaatctatTGCACTGGGAATGGAGTACGCTTTAACCT
TCGTCACACTGTACGTGTACTTGAAAGATGTCATTAAGACGAAACACGTA
GATGAATTCTACAgtgctatatccgccatctttattCTGTCCCAGATCAC
CATGTCTTTAATTTTTGGACATTTATTCGACAAATATCGCAATCTACACA
CCATGTTCTTCGTTGGGAATGTTCTCATTATCATTGGTAACATTTTGTAC
ACCATCCCTTATTCAGCGTGGAATTTATTTGCAGGGCGGCTAATCTCGGG
TGGAGGTGGTTCATTACGTGCCATTATGACGTCAGAGCTGACTAGATCGT
ATCCAGAAGAAGAGCTTTTACCGCAATTCTCAGCCATGGGGATGTCATTT
GCAATGGGATTCATTATAGGCCCTGTTATCAATTTCGCATTTATTAAAGC
TGATTTTAAGTTTCTCGGAATTCAAATTGGGTACGCTAACGGATCGGGTT
TAATTCTaacttttgtgtttatctttgtTCTATTTCTTGCAACATTTGGA
GTCAGTGACCTGTCTAAAGAGTATGACATGAAAGAAACACGCATGCACGG
TGTAAATAAGGGAGACACGTCATTGGctgatgaaaaatttgaagaaacgc
GATTGGATGACGCAAAAGAAAAGGAAGGAATGCCATTAGTTGAGAATAAT
CAAAATGGTAGCGAAGAAATGATGGAAAAGTTTGGAGTGTTAAAAACACT
TGCAATCTTATTTGGATCTGTTGATGTTGTTCTGATTCtgtttttttcac
tgtttttcatGCACTGTATGGTTTGTTACGATATCTGGCAACCGATGGCT
TCAATCGATTTTCTGAAATGGGGGATCTTGGAAATCAATATTATAAACCT
TGGGTATGGTGTTACTGCTGCTGGAATTTTCCTCATCGTCCTGTTCAATC
CAATGAGTGAGAAAGTATTGGTTTATGCAGCTATGGTCTGTGTTTTGTGT
TTAGGATGTATTCAGGTCATGTATGTGGTACTAAAAATATACCGACCCGG
TTCGACGGTTAGTATTTTGTTATGGATTGGATATACTTTATGGTTTGCTA
TTGTTATCATAATGGAGGAAGTGTTTTTGATTAATACCATGTCTAGATTG
ATTCCATCAAACATTCAAGCCTTCTCAGAGAGTGTCCGCTTATCGTTCTC
GCGGGCGGGAGCTGTCATAGGTCTTCTAACGGCAGCTTTTTCCTTTCATT
ATCTCCATTATGTATGCGCTGGATACCTGGTAATCACAGGTATTGTTATG
GTTTTATTAATATGGCGGAGAAAACGATTTCAACATCCAAAAGTTATAGA
ATTAATTACTTTAGAAAATTTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025026-exon-sc0000515-1491911889:85629..87514 | TCONS_00025026-exon-sc0000515-1491911889:85629..87514 | Clytia hemisphaerica | exon |
| TCONS_00025026-exon-sc0000515-1510915933:85629..87514 | TCONS_00025026-exon-sc0000515-1510915933:85629..87514 | Clytia hemisphaerica | exon |
| TCONS_00025026-exon-sc0000515-1575043694:85629..87514 | TCONS_00025026-exon-sc0000515-1575043694:85629..87514 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000515 | supercontig | sc0000515:85629..87514 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005215 | transporter activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0005215 |
transporter activity |
Blast
The following BLAST results are available for this feature:
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