TCONS_00025024 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025024
Unique NameTCONS_00025024
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length453

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025024 ID=TCONS_00025024|Name=TCONS_00025024|organism=Clytia hemisphaerica|type=transcript|length=453bp
ttttagtTAGGTTTTCGCTTGCGAATTACAAGCAAGCATTGCAAAAATGT
AAGTTTTTACTTTTATTCTAGTATGGTGATTGTAAGAGAAAACTTATCTC
AGGGAATTTCATTCGTGTTAATTCACTTGTATACACTCTGCACTCTGATC
CGGATGACTCTTTCTGTTCTGAAACTCAAGTAAGTTCAGATAGAGGCTCG
GACTCCCTTACACCTTTTGTTTAAATATAGAATTAGACTTTTCAGTCATG
ACTTAGTCTACTGTATCAGACCGCTCCGAGCTTTAGGCTCTCCTAGAAGG
TTTAACGCACGGAGCGAgggagatatgacgtagcctagtcATGACTACGT
ATAAAACTTTTCAGTGTTTTCAGAGATATTTCGAACCATTATTCAAAAAC
AGTTTTATGAACTTTGAAAATAGCTTTTATCACTAAGGACAGGTACGGCC
TCG
Run BLAST on NCBI

transcript from alignment at sc0000515:12205..12657

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025024 ID=TCONS_00025024|Name=TCONS_00025024|organism=Clytia hemisphaerica|type=transcript|length=453bp|location=Sequence derived from alignment at sc0000515:12205..12657 (Clytia hemisphaerica)
CGAGGCCGTACCTGTCCTTAGTGATAAAAGCTATTTTCAAAGTTCATAAA
ACTGTTTTTGAATAATGGTTCGAAATATCTCTGAAAACACTGAAAAGTTT
TATACGTAGTCATgactaggctacgtcatatctcccTCGCTCCGTGCGTT
AAACCTTCTAGGAGAGCCTAAAGCTCGGAGCGGTCTGATACAGTAGACTA
AGTCATGACTGAAAAGTCTAATTCTATATTTAAACAAAAGGTGTAAGGGA
GTCCGAGCCTCTATCTGAACTTACTTGAGTTTCAGAACAGAAAGAGTCAT
CCGGATCAGAGTGCAGAGTGTATACAAGTGAATTAACACGAATGAAATTC
CCTGAGATAAGTTTTCTCTTACAATCACCATACTAGAATAAAAGTAAAAA
CTTACATTTTTGCAATGCTTGCTTGTAATTCGCAAGCGAAAACCTAacta
aaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014067XLOC_014067Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025024-exon-sc0000515-1491911889:12205..12657TCONS_00025024-exon-sc0000515-1491911889:12205..12657Clytia hemisphaericaexon
TCONS_00025024-exon-sc0000515-1510915933:12205..12657TCONS_00025024-exon-sc0000515-1510915933:12205..12657Clytia hemisphaericaexon
TCONS_00025024-exon-sc0000515-1575043694:12205..12657TCONS_00025024-exon-sc0000515-1575043694:12205..12657Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000515supercontigsc0000515:12205..12657 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.30861	0.567154	0	0	0.588242	1.31555	0.851816	0.52502	1.22526	1.51769	0.441931	0.387344	0.396583	0.200851	4.52701	0.915424	1.20067	0.671262	0	0.32348	0.281163	0	0.833567	0.4547	0.31222	0	0.199373	0.425553	0.806917	0.493272
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025024 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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