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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025019 ID=TCONS_00025019|Name=TCONS_00025019|organism=Clytia hemisphaerica|type=transcript|length=6480bpRun BLAST on NCBI protein sequence of TCONS_00025019-protein >TCONS_00025019-protein ID=TCONS_00025019-protein|Name=TCONS_00025019-protein|organism=Clytia hemisphaerica|type=polypeptide|length=969bp MLKNLRRKAPEKDKLGHDLFKLAKTGEHGSPNKPSAIAYDSQLHLLAIGTRun BLAST on NCBI transcript from alignment at sc0000515:105689..154097- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025019 ID=TCONS_00025019|Name=TCONS_00025019|organism=Clytia hemisphaerica|type=transcript|length=48409bp|location=Sequence derived from alignment at sc0000515:105689..154097- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000515:105689..154097- >TCONS_00025019 ID=TCONS_00025019|Name=TCONS_00025019|organism=Clytia hemisphaerica|type=CDS|length=52326bp|location=Sequence derived from alignment at sc0000515:105689..154097- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00025019 vs. Swiss-Prot (Human)
Match: L2GL1 (Lethal(2) giant larvae protein homolog 1 OS=Homo sapiens GN=LLGL1 PE=1 SV=3) HSP 1 Score: 641.343 bits (1653), Expect = 0.000e+0 Identity = 375/956 (39.23%), Postives = 559/956 (58.47%), Query Frame = 3
Query: 3573 MLK-NLRRKA--PEKDKLGHDLFKLAKTGEHGSPNKPSAIAYDSQLHLLAIGTQSGHLKVYGKPGVELIAQESSAATTCIQQLFFLEGQGRIISVCDDGEQNTLHLWEINNPYGSKSILEEVKACTLEGR-----------LKKISVCCLSMAKECLYIGTEGGHIYVLDLISFEL-KDHVIYQDIVMQSLPGNTTDNKKSNGGSVEALQEHPTDPEKLLIGYKKGIIVLWNQSKIKAEGPFVAQPEVESVYWHKSCERFISAHENGSLSVWKVPQHETGNIEQQ-SSTPFGPFPCKAIRKVEWHN-----DTVIFSGGLPRASYGDKHSVSILEDNTVKVVLDFTSKVIDFFSIYE---EHXXXXXXXXXXXXXXXXXXKNSSEKGYQVYDKPYLACIHSSPISATTHVTDIPKDLWAFLVEAGKKQTGND-TSLESWPVDGGRCLLPELMKHDILITGHEDGTVKFWNVTGLSFTLIYTISTSKLFQSXXXXXXXXXXXXXXXXXXFKKVGNFDPFADDPRFVVQKILLCPVTKVLLVGGSGGQLMIYNLQENE-KDSTEITDVNVIANLEGFEWKGHGPLSLRTDPVQTQHGILPERVLQLRPSAPITAIAMESAWGLLAVGTCHGLVVFDYLLHKVALVKCTVNPTDLANTGAGIQRKRTLAKSLRDXXXXXXXXXXXXXXXXXXXXADGAASPGGVRSVG----YEASPQTRLIDEQRVDEDMLSMVRCIYFGETFLGDGGHRTATMWAGTNAGYIYVYSLIIPPK----DERHTTEVKTEVGKELKLKHHAPVVNIFVVDKNGVPVCSVSEQEAGRTQKSDMSGGHSVLISSEEQFKVFTLPTLRPRNKEKLTAVDGSRVRKLGIIDIPSKTPEGADIVHHCLMCLTNQGDVMIYSIPNLKQQMKKNVAKREDIRAISSLLFTHDGEGFYLKSTSELQRFSVLSSNKIVP 6338
M+K RR+ P+++KL +LF KT EHG PN+PSA+A+D +L ++AIGT+SG +K+YG PGVE AAT + Q+ FL GQGR++S+ + ++LHLWEI + G LEE + L R L +++V L A + +GTEG ++ LD+ + L + + V++S+P + K G VE+LQ H DP K+LIGY +G++V+WNQ+ + F+ ++ES+ W + +S+H +GS +VW V ++ ++TP+GPFPCKAI K+ W N +IFSGG+PRASYGD+H VS+L T+ V LDFTS++IDFF+++ E D L + + + G+ PYLA +HSS I+ + HV +P LWA +V AG++Q+ +S SWP+ GGR L E + +L+TGHEDGTV+FW+ +G++ +Y +ST+ LFQ+D + ++DWPPF+KVG FDP++DDPR VQK+ LC T ++V G+ GQ+++ L + + + + ++++ + EGF WKGH LS RT P+ G P ++Q P A +TA+ + + W L+A GT HG +FDY L +CT++P D + R ++L KSLR SFRR+R R S + + + + + E +P R I+ + D+ + +VRC+YF +TFL DG H TMWAGTN+G ++ Y+L +P ++R V+ +GKE++L H APVV I V+D G P+ E Q DM GGH+VLI+SEEQFKVFTLP + + K KLTA +G RVRK+ + S E D CL CLTN GDV ++S+P L+ Q+ + ++EDI I+S +FT G+GFYL S SE +RFS+ + N P
Sbjct: 1 MMKFRFRRQGADPQREKLKQELFAFNKTVEHGFPNQPSALAFDPELRIMAIGTRSGAVKIYGAPGVEFTGLHRDAAT--VTQMHFLTGQGRLLSL---LDDSSLHLWEIVHHNGCAH-LEEALSFQLPSRPGFDGASAPLSLTRVTVVLLVAASDIAALGTEGSSVFFLDVTTLTLLEGQTLAPGEVLRSVPDDYRCGKAL--GPVESLQGHLRDPTKILIGYSRGLLVIWNQASQCVDHIFLGNQQLESLCWGRDSSTVVSSHSDGSYAVWSVDAGSFPTLQPTVATTPYGPFPCKAINKILWRNCESGGHFIIFSGGMPRASYGDRHCVSVLRAETL-VTLDFTSRIIDFFTVHSTRPEDEFDDPQALAVLLEEELVVLDLQTPGWPAVPAPYLAPLHSSAITCSAHVASVPAKLWARIVSAGEQQSPQPVSSALSWPITGGRNLAQEPSQRGLLLTGHEDGTVRFWDASGVALRPLYKLSTAGLFQTDCEHADSLAQAAEDDWPPFRKVGCFDPYSDDPRLGVQKVALCKYTAQMVVAGTAGQVLVLELSDVPVEQAVSVAIIDLLQDREGFTWKGHERLSPRTGPLPWPAGFQPRVLVQCLPPAAVTAVTLHTEWSLVAFGTSHGFGLFDYQRKSPVLARCTLHPNDSLAMEGPLSRVKSLKKSLRQSFRRIRKSRVSGKKRAANASSKLQEANAQLAEQACPHDVEMTPVQRRIEPRSADDSLSGVVRCLYFADTFLRDGAHHGPTMWAGTNSGSVFAYALEVPAAAVGGEKRPEQAVEAVLGKEVQLMHRAPVVAIAVLDGRGRPLPEPYEASRDLAQAPDMQGGHAVLIASEEQFKVFTLPKVSAKTKFKLTAHEGCRVRKVALATFASVACE--DYAETCLACLTNLGDVHVFSVPGLRPQVHYSCIRKEDISGIASCVFTRHGQGFYLISPSEFERFSLSARNITEP 945 The following BLAST results are available for this feature:
BLAST of TCONS_00025019 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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