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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025017 ID=TCONS_00025017|Name=TCONS_00025017|organism=Clytia hemisphaerica|type=transcript|length=3903bp
TCGAGCAAGCGTGTACTGATTTTCTTCAAGATGATGTCGAATTGTATACA
GTTACAGAGTTTCACAATATGATGTCTTCCCTTGGCGATGAAGTATATTC
cgtgaaaatgaccaaaaataaaTTGGAAGAAAAGTACAAAAATTGCATTA
ACTTTGTTTCCAGAGAAGGAAAAAGCAATATTATATTACTGAACAGAGCT
GCTGAAGTACTATCGGAGAAATGGTACAAAGAAAGACAAAATGGAATCGG
TGATGAAACTATTCGTATTGTAAGAACAGCTGGAGTTTTGTTAAAAGAAG
CCatcaaaaattacgaaaatgacTCAACAACTTACCCAACATGCGACGAT
ATAAGATCACCAATGAATCACGTACCcaatcttttgaaaatgtttttgaa
tgaacttTTCACAACTGAAATCAAACAAGCAATAATATCACATGCAATCG
TCGCTGCAACAAGACCAAGAACTATCATGCCACTACAGTTCGGACTGGCA
ATCTCAACGGACAATCAAATTGGATCTAAATGGCTAAACATTCGGTTATC
AAGATTGGGGCTATCAGTTAGCTATGACGAGGTGACTATactgaaatttt
tctaaaaggacAGGATCCCCTGCATTTAAACACTTTTACCAGTTTACAGT
AGATgaccaatgttgtttcaacaCTTTTCTGTCATAGTGAATATCAAATT
ACAAGTCATTTTCTATAAACTTTCTTTTCACAGGTGATACGATTCAAACA
AAATGTCATCAAGCATGACAAGTCACGCGAAATCATGTCTCCTGAAGGAA
CAACCTTTATGCAATACGTGTCGGACAATTCCGATCAACAAATGGCTACT
CTGGATGGCAAAAAAACCCATCACGGATTAGGATCCTTGGCCATCGCAAA
TGGAAATTTCACTGATTACAACTTACCGTGTCATCGTATCCCACGAGATA
AACGGGAAAAATGGGAAGACGTCGAAGGAAATAATGGAATCGAAATCCAT
GAATACCACGAGCCCGAAACATCTGCACTATCAAAAACAATGTTCAAACC
AATACAGGGGAAATTGCCGACATTCCATTTTATCGATCTGCTTTGGACAT
CGAGTTATCTTTTCAAAGAAATGTGCCCAAGTTGGTCTGGATACATGAGT
TCCAAAGTTAACGAACAACCGTTGCCAAAATCACGTGTGACCATGCTTCC
AATCATAGATTTGCATGCCACCGATCCAACAGCAATCTATTCTTTACTTC
TTTACTTAATCGACCAAAGTAAGAAGCTCCGAATCAATTTACCATGTGTC
ACCTTTGACCAACAATTGTACATCAAAGCATACGAGATTGTTATGTCGAA
GAAGCTACACGTATTTGTTCGACTTGGAGGCTTTCACCAATTGATGAGCT
TTCTTGGTTCGATTGGAAACCTTATGCAGGGATCTGGGTTGAACAAAGCT
CTCGAAACAGTTTATGCACCTGTAACAGTTGGACATATGTTCACTGGAAA
AGCATATTCCAGATCCGTTCGTGGTCATCTACTTTGTGCAACTGGCGTAC
AATTGAAGAGTTCTGGAACAGGCTCaccaacaaagaaaaagaagaactgG
AGCAGTGCTACAATGCTATTGATCCCTCCGTGCACGAAGGAGAAGAAATC
AGCACCAAGCTAAGCAAATGGGTTGAAGCTAAACATAAAGAGTTATCAGA
ATCATCCAGGACAGCTGCCCTATGGTCAAGCTACATCCGTTACGTCAACG
TTGTGCAAGATTTCATCAGGGCAGAAAGAACTAATGATTGGAAATTGCAC
ATCTCCTCAACCTATGCCATGCTCAATCTTTTTGCTGCAACAGGACACAA
CAACTACGCTAAGTCCTGCAGATTGTATCTTCAATCTGTCACTGAATTGG
AAACTGCGCAACCGGAGGTGTACGATCAGATGTTGAAGGGTAACCACACT
GTCCGAAGAACCCTAAAGAATTGGGCTGGTCTTTGGACAGATCTTTCGAT
TGAACAAATATTGATGAAGTCTTTGAAGGGTAGATCGGGAGTCGTGGCTA
AAGGAATTACCGAAAACGTTTTACAAGTCTGGACTAAAACGATGCACCGA
TGTGCGGAAATATCAGACGCCATGAACACAATCGTCTCAACCAAACCACA
ATCAACACCTAAACACAAAGAACTGTTTGTTGGTAGAATCAAGCGAGATT
ACGAAGATTTCCTCAAAATTAAGgtaactttcattttttctgatttctaa
aTTCTTTCCATTCCTATTCTAACTGTGCTTGCATGACTATTGCCTGGCCT
ACTTAGTTTTATGGGTCTCTTGTTGTTTGGATCGCTGATTTAAACAAGGG
ACTCCAAGTCTAACCTAGCTGAATTACCCATTACAAAAGTTGTATTTAAC
GAGAATAAATACTTTGGTTTCAGAGCTGGTTTGATGACCGAAACCCATTT
ACCATCAGTAAAGATCTTATTTCACTGGACACAGGGCTGGTAGACCTAGA
AAACCGATTGACATGTGACAAAGCCGACACAATCGGGGCTGCTATCCACA
AAGAATTAGAAGATCAATCGTATTCTGGATGTACCATAAAACGAAGTAAA
CAAATTACAAATTTGCAAAGCTTGTATTCCAACGTCAGCATCGAGAAAGA
AAAAGTATCCGTCGACCCGCTGACTCTCTTCCTACGTCTGATCGTCCTAG
TTGAACGAAAGCCTGAGAATGATATCGTTGATTACTTCAATTACGAGTTA
TCGCCATATCCAATGTCCCTGTTCAAAGATGGCATCATGCGAACATCACC
GAAATCAGTTTTAAAACCATACCTTAGAAGTGGGAATCCCGCTGTTAGCA
TTCCAGAAACAACTCGTATTGTTGATGGTGGTGGTCTGCTGTGGTGTTGT
GACTGGAAAAGAGATGAAACATTCCTCGTCATTTTTCAAAGGTATGCAGT
ATTTCTCACAAATCACAACATCGATACAATAGTTTTTGACGGATACAGCT
TGTCGACTAAAGATTCAACACACCAAAAGCGATCTGGGACTGCTTCTCAA
GAAGTCGAAATCAAAGAGGCGAATCCTTGTCCAGCCAACAGAAAAACCTT
TCTTGGGAACTACCATAACAAAGAAAGATTTGTTGCATGCCTGGCAGGTT
ACCTAAGAGAGCGCAACTTCAAAGTGGTCGAGTGTCCAAGCGATGCAGAC
ACAACCATTGTCAAAGAGGCGTTGAATGCTGCTAAGGATTCGTCTGTTGT
TATCTACTCTGACGACACTGATATTCTTTGTTTGCTGTTGCATCACATCG
CCAAAGATTCGTCACTGAAGGAGATTTTCATGGTCGATATGACTAAAAAG
AAAGGCAAGCAAAGAGAATGCTACAACGTATCAGAAATTCTCCAAAGCAA
CACACGTATTGCCGATTTCATTTTGTTTGCCCACGCATTCACTGGTTGTG
ATACGACATCGGCAATTCACAATTTCGGAAAGACGTCAATCTTCAACAAA
ATAGAAGAATCAACCGAAATTCAGTCACTCGTCAGAGAATTCTACAAAGA
TAATTCTCCCGAGAAAATTGGTGATATCGCGATAAGGCTGTTTGAACTCT
TGTACTCTTCAACGGATACATTGCCAACTATACGGAAGAAGAAGTACGAG
CAAATGGTTTTGTCAAATCGTGCTGTCATCGACCCTTCAATGCTACCGCC
ATCACCTAGGGCAGCTTATTACCATGGCTTACGCGTGTATCACCAGTTGA
AAGTATGGCGAGAGCTCAGAAATACCGACAACATGCCACTTAACTGGGGG
TGGCAGATGGTGGCTGAATCCTTTACTCCAATCATGACAGATATCAAAGC
TGGTCTCTCTGATCTATTGAAAGTTATTCGTTGTGGCTGTAAAGGTATGT
GTG Run BLAST on NCBI transcript from alignment at sc0000515:52379..56410- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025017 ID=TCONS_00025017|Name=TCONS_00025017|organism=Clytia hemisphaerica|type=transcript|length=4032bp|location=Sequence derived from alignment at sc0000515:52379..56410- (Clytia hemisphaerica)
TCGAGCAAGCGTGTACTGATTTTCTTCAAGATGATGTCGAATTGTATACA
GTTACAGAGTTTCACAATATGATGTCTTCCCTTGGCGATGAAGTATATTC
CGTGAAAATGACCAAAAATAAATTGGAAGAAAAGTACAAAAATTGCATTA
ACTTTGTTTCCAGAGAAGGAAAAAGCAATATTATATTACTGAACAGAGCT
GCTGAAGTACTATCGGAGAAATGGTACAAAGAAAGACAAAATGGAATCGG
TGATGAAACTATTCGTATTGTAAGAACAGCTGGAGTTTTGTTAAAAGAAG
CCATCAAAAATTACGAAAATGACTCAACAACTTACCCAACATGCGACGAT
ATAAGATCACCAATGAATCACGTACCCAATCTTTTGAAAATGTTTTTGAA
TGAACTTTTCACAACTGAAATCAAACAAGCAATAATATCACATGCAATCG
TCGCTGCAACAAGACCAAGAACTATCATGCCACTACAGTTCGGACTGGCA
ATCTCAACGGACAATCAAATTGGATCTAAATGGCTAAACATTCGGTTATC
AAGATTGGGGCTATCAGTTAGCTATGACGAGGTGACTATACTGAAATTTT
TCTAAAAGGACAGGATCCCCTGCATTTAAACACTTTTACCAGTTTACAGT
AGATGACCAATGTTGTTTCAACACTTTTCTGTCATAGTGAATATCAAATT
ACAAGTCATTTTCTATAAACTTTCTTTTCACAGGTGATACGATTCAAACA
AAATGTCATCAAGCATGACAAGTCACGCGAAATCATGTCTCCTGAAGGAA
CAACCTTTATGCAATACGTGTCGGACAATTCCGATCAACAAATGGCTACT
CTGGATGGCAAAAAAACCCATCACGGATTAGGATCCTTGGCCATCGCAAA
TGGAAATTTCACTGATTACAACTTACCGTGTCATCGTATCCCACGAGATA
AACGGGAAAAATGGGAAGACGTCGAAGGAAATAATGGAATCGAAATCCAT
GAATACCACGAGCCCGAAACATCTGCACTATCAAAAACAATGTTCAAACC
AATACAGGTAAAGAAATTTCATAATATCCTCACGATCATAAGTAAGTCTA
GCCCTTGTATCTGTATTTCTCTTCTGTTTTTTTGTCTACGCATCAAGTAT
CTCTTACTAAATTTATACTCAATACTTATTTCATAGGGGAAATTGCCGAC
ATTCCATTTTATCGATCTGCTTTGGACATCGAGTTATCTTTTCAAAGAAA
TGTGCCCAAGTTGGTCTGGATACATGAGTTCCAAAGTTAACGAACAACCG
TTGCCAAAATCACGTGTGACCATGCTTCCAATCATAGATTTGCATGCCAC
CGATCCAACAGCAATCTATTCTTTACTTCTTTACTTAATCGACCAAAGTA
AGAAGCTCCGAATCAATTTACCATGTGTCACCTTTGACCAACAATTGTAC
ATCAAAGCATACGAGATTGTTATGTCGAAGAAGCTACACGTATTTGTTCG
ACTTGGAGGCTTTCACCAATTGATGAGCTTTCTTGGTTCGATTGGAAACC
TTATGCAGGGATCTGGGTTGAACAAAGCTCTCGAAACAGTTTATGCACCT
GTAACAGTTGGACATATGTTCACTGGAAAAGCATATTCCAGATCCGTTCG
TGGTCATCTACTTTGTGCAACTGGCGTACAATTGAAGAGTTCTGGAACAG
GCTCACCAACAAAGAAAAAGAAGAACTGGAGCAGTGCTACAATGCTATTG
ATCCCTCCGTGCACGAAGGAGAAGAAATCAGCACCAAGCTAAGCAAATGG
GTTGAAGCTAAACATAAAGAGTTATCAGAATCATCCAGGACAGCTGCCCT
ATGGTCAAGCTACATCCGTTACGTCAACGTTGTGCAAGATTTCATCAGGG
CAGAAAGAACTAATGATTGGAAATTGCACATCTCCTCAACCTATGCCATG
CTCAATCTTTTTGCTGCAACAGGACACAACAACTACGCTAAGTCCTGCAG
ATTGTATCTTCAATCTGTCACTGAATTGGAAACTGCGCAACCGGAGGTGT
ACGATCAGATGTTGAAGGGTAACCACACTGTCCGAAGAACCCTAAAGAAT
TGGGCTGGTCTTTGGACAGATCTTTCGATTGAACAAATATTGATGAAGTC
TTTGAAGGGTAGATCGGGAGTCGTGGCTAAAGGAATTACCGAAAACGTTT
TACAAGTCTGGACTAAAACGATGCACCGATGTGCGGAAATATCAGACGCC
ATGAACACAATCGTCTCAACCAAACCACAATCAACACCTAAACACAAAGA
ACTGTTTGTTGGTAGAATCAAGCGAGATTACGAAGATTTCCTCAAAATTA
AGGTAACTTTCATTTTTTCTGATTTCTAAATTCTTTCCATTCCTATTCTA
ACTGTGCTTGCATGACTATTGCCTGGCCTACTTAGTTTTATGGGTCTCTT
GTTGTTTGGATCGCTGATTTAAACAAGGGACTCCAAGTCTAACCTAGCTG
AATTACCCATTACAAAAGTTGTATTTAACGAGAATAAATACTTTGGTTTC
AGAGCTGGTTTGATGACCGAAACCCATTTACCATCAGTAAAGATCTTATT
TCACTGGACACAGGGCTGGTAGACCTAGAAAACCGATTGACATGTGACAA
AGCCGACACAATCGGGGCTGCTATCCACAAAGAATTAGAAGATCAATCGT
ATTCTGGATGTACCATAAAACGAAGTAAACAAATTACAAATTTGCAAAGC
TTGTATTCCAACGTCAGCATCGAGAAAGAAAAAGTATCCGTCGACCCGCT
GACTCTCTTCCTACGTCTGATCGTCCTAGTTGAACGAAAGCCTGAGAATG
ATATCGTTGATTACTTCAATTACGAGTTATCGCCATATCCAATGTCCCTG
TTCAAAGATGGCATCATGCGAACATCACCGAAATCAGTTTTAAAACCATA
CCTTAGAAGTGGGAATCCCGCTGTTAGCATTCCAGAAACAACTCGTATTG
TTGATGGTGGTGGTCTGCTGTGGTGTTGTGACTGGAAAAGAGATGAAACA
TTCCTCGTCATTTTTCAAAGGTATGCAGTATTTCTCACAAATCACAACAT
CGATACAATAGTTTTTGACGGATACAGCTTGTCGACTAAAGATTCAACAC
ACCAAAAGCGATCTGGGACTGCTTCTCAAGAAGTCGAAATCAAAGAGGCG
AATCCTTGTCCAGCCAACAGAAAAACCTTTCTTGGGAACTACCATAACAA
AGAAAGATTTGTTGCATGCCTGGCAGGTTACCTAAGAGAGCGCAACTTCA
AAGTGGTCGAGTGTCCAAGCGATGCAGACACAACCATTGTCAAAGAGGCG
TTGAATGCTGCTAAGGATTCGTCTGTTGTTATCTACTCTGACGACACTGA
TATTCTTTGTTTGCTGTTGCATCACATCGCCAAAGATTCGTCACTGAAGG
AGATTTTCATGGTCGATATGACTAAAAAGAAAGGCAAGCAAAGAGAATGC
TACAACGTATCAGAAATTCTCCAAAGCAACACACGTATTGCCGATTTCAT
TTTGTTTGCCCACGCATTCACTGGTTGTGATACGACATCGGCAATTCACA
ATTTCGGAAAGACGTCAATCTTCAACAAAATAGAAGAATCAACCGAAATT
CAGTCACTCGTCAGAGAATTCTACAAAGATAATTCTCCCGAGAAAATTGG
TGATATCGCGATAAGGCTGTTTGAACTCTTGTACTCTTCAACGGATACAT
TGCCAACTATACGGAAGAAGAAGTACGAGCAAATGGTTTTGTCAAATCGT
GCTGTCATCGACCCTTCAATGCTACCGCCATCACCTAGGGCAGCTTATTA
CCATGGCTTACGCGTGTATCACCAGTTGAAAGTATGGCGAGAGCTCAGAA
ATACCGACAACATGCCACTTAACTGGGGGTGGCAGATGGTGGCTGAATCC
TTTACTCCAATCATGACAGATATCAAAGCTGGTCTCTCTGATCTATTGAA
AGTTATTCGTTGTGGCTGTAAAGGTATGTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025017-exon-sc0000515-1575043694:55354..56410 | TCONS_00025017-exon-sc0000515-1575043694:55354..56410 | Clytia hemisphaerica | exon |
| TCONS_00025017-exon-sc0000515-1575043694:52379..55224 | TCONS_00025017-exon-sc0000515-1575043694:52379..55224 | Clytia hemisphaerica | exon |
| TCONS_00025017-exon-sc0000515-1510915933:55354..56410 | TCONS_00025017-exon-sc0000515-1510915933:55354..56410 | Clytia hemisphaerica | exon |
| TCONS_00025017-exon-sc0000515-1510915933:52379..55224 | TCONS_00025017-exon-sc0000515-1510915933:52379..55224 | Clytia hemisphaerica | exon |
| TCONS_00025017-exon-sc0000515-1491911889:55354..56410 | TCONS_00025017-exon-sc0000515-1491911889:55354..56410 | Clytia hemisphaerica | exon |
| TCONS_00025017-exon-sc0000515-1491911889:52379..55224 | TCONS_00025017-exon-sc0000515-1491911889:52379..55224 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000515 | supercontig | sc0000515:52379..56410 - |
Blast
The following BLAST results are available for this feature:
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