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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025016 ID=TCONS_00025016|Name=TCONS_00025016|organism=Clytia hemisphaerica|type=transcript|length=1635bpRun BLAST on NCBI protein sequence of TCONS_00025016-protein >TCONS_00025016-protein ID=TCONS_00025016-protein|Name=TCONS_00025016-protein|organism=Clytia hemisphaerica|type=polypeptide|length=451bp MSCIHLESFKDTEGTTNYRTIFSNFVVCFSKDALKRKATSMKCHQCHTSGRun BLAST on NCBI transcript from alignment at sc0000515:217573..231981+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025016 ID=TCONS_00025016|Name=TCONS_00025016|organism=Clytia hemisphaerica|type=transcript|length=14409bp|location=Sequence derived from alignment at sc0000515:217573..231981+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000515:217573..231981+ >TCONS_00025016 ID=TCONS_00025016|Name=TCONS_00025016|organism=Clytia hemisphaerica|type=CDS|length=17589bp|location=Sequence derived from alignment at sc0000515:217573..231981+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00025016 vs. Swiss-Prot (Human)
Match: UBP22 (Ubiquitin carboxyl-terminal hydrolase 22 OS=Homo sapiens GN=USP22 PE=1 SV=2) HSP 1 Score: 496.893 bits (1278), Expect = 3.385e-170 Identity = 256/455 (56.26%), Postives = 316/455 (69.45%), Query Frame = 3
Query: 255 LAANQVFAKMSCIHLESFKDTEGTTNYRTIFSNFVVCFSKDALKRKATSMKCHQCHTSGSFLHACLHCVYFGCYSGSKHIIDHLQKKNHALAVDLNYGNIYCSICETYVYDKEIDAISKDEADKASQLKYNGKRKYFEWEPNSIEKELLKMHSKRLKLTDSSYIGLRGLINLGSTCFMNCILQAFAHTPMLRNYFLSDSHHCPAEEAPNCLVCEMSNLFQEFYSGKKTAHIPFRLLYKVWTNARHLAGYEQQDAHEFFIAALDVLHRHCR-DNNTAPSNNHNNCNCIIDQIFTGGLQSELTCQACSGVSTTVDPFWDISLDL-GMTDNSTPVKSGSSGGRRTPVPPVXXXXXXXXXXXXXXXXHEDERFIPQSLIDCLKRFTRPEKLGSEAKIRCSKCQSYQESTKQLSMKKLPIVVCFHFKRFEHYNK-SRKISSLIPFPEELDMTPFMANSLE 1610
+ A A C HL SFK N R I+ FV + +A KRKA S CH C + LH+CL+CV+FGC++ KHI +H + K H LA+DL YG IYC +C+ Y+YDK+++ I+K+E KA +++ G+ K+ WEP E ELLK + KR K+T + IGLRGLINLG+TCFMNCI+QA HTP+LR++FLSD H C + +CLVCEMS+LFQEFYSG ++ HIP++LL+ VWT+ARHLAGYEQQDAHEF IAALDVLHRHC+ D+N +NN N+CNCIIDQIFTGGLQS++TCQ C GVSTT+DPFWDISLDL G + P+ GS G VS T +L DCL+RFTRPE LGS AKI+CS C SYQESTKQL+MKKLPIV CFH KRFEH K RKI++ + FP ELDMTPFMA+S E
Sbjct: 12 MDAELAVAPPGCSHLGSFKVDNWKQNLRAIYQCFVWSGTAEARKRKAKSCICHVCGVHLNRLHSCLYCVFFGCFT-KKHIHEHAKAKRHNLAIDLMYGGIYCFLCQDYIYDKDMEIIAKEEQRKAWKMQGVGE-KFSTWEPTKRELELLKHNPKRRKITSNCTIGLRGLINLGNTCFMNCIVQALTHTPLLRDFFLSDRHRCEMQSPSSCLVCEMSSLFQEFYSGHRSPHIPYKLLHLVWTHARHLAGYEQQDAHEFLIAALDVLHRHCKGDDNGKKANNPNHCNCIIDQIFTGGLQSDVTCQVCHGVSTTIDPFWDISLDLPGSSTPFWPLSPGSEGNVVNGESHVSGTT---------------------TLTDCLRRFTRPEHLGSSAKIKCSGCHSYQESTKQLTMKKLPIVACFHLKRFEHSAKLRRKITTYVSFPLELDMTPFMASSKE 443 The following BLAST results are available for this feature:
BLAST of TCONS_00025016 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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