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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025006 ID=TCONS_00025006|Name=TCONS_00025006|organism=Clytia hemisphaerica|type=transcript|length=1713bp
gcatgaaaaactgataaagaaaaaggtcataacttatatctgaaaatgaa
tatatcaggagaaaattcgaaaatttttggcaatgtgtgggatggagcat
gttgcattgcaccaacacgAAAAAATTTCTCGTGTTCCCAAgccttaaat
atttttttttcacgaatcTAATTCGTGAAGCTGGTATTAGCGTGatgctt
ttaatttttaattctcaataaaaataaataaaattcattatatttatatt
gaaaaattataaattgtctaaaGTAATTAACTCTATAACTTGTGGATGTT
GGAATCGTTTTCTCCGCCATATCAATAAAACCATAACAACACCAGTGATC
ACCAGGTACCCAGCACATATATAATGGAGATAATGGAAAGAAAAAGCTGC
CGTTAGAAGACCTATGACAGCTCCCGTCCGCGAGAACGATAAGCGGACAC
TCTCAGAGAAGGCTTGGATGCTTGATGGAATCATCCTAGACATGGTATTA
ATCAAAAACACTTCCTCCATTAAGACAACGATTGCAAACCAGAACGAATA
TCCAATCCATAACAAAATACTAACCGTCGAACCGGGTCGGTATATTTCCA
TGACCGCATACATCACCTGAATACATCCTAAACACAAAACACAGACCATA
GCTGCATAAACCAATACTTTCTCACTCACCGGATTGAACACGACGAAAAG
TAAAAATCCAGCAGCAGCAACACCATATCCAACGTTTATAATATTGATTT
CCAAGATTCCCCATTTCTGAAATTCGATTACAGCCATCGGTTGCCAGATA
TCGTAACAAACCATGCAATGCATGAAAAACAGGGAAAAGAACAGAATCAG
AACAACATCAACAGATCTAAAAAAGATTGCAAGTGTTTTTAACACTCCCA
ACTTTTCCATCATTTCtttgctaccattttgattATTCTCAACTAATGGC
ATTCCTTCCTTTTCTTCTGCGTCATCCAATCgcgtttcttcaaatttttc
atcagTCAATGACGTGTCTTCTTTAATTCCACTGCGCATGCGTGTTTCCT
TCATGTCATACTCTTTAGACAGGTTACTTACTCCAAACGTTGCAAGTAAT
TGAACAAAGATGAAcataaaagttaaaattaaacCCGATCCGTTAGCGTT
CCCAATTTGAATTCCGAGAAACTTAAAATCAGCTTTAATAAATGCGAAAT
TGATAACAGGACCTACAATGAATCCAATTGAAAATGACATCCCCATGGCT
GAGAATTGCGATAAAAGCTCTTCTTCTGGATACGATCTAGTCAGCTCTGA
CGTCATAATGGCACGTAATGAACCACCTCCACCCGAGATGAGCCGCCCTG
CAAATAAATTCCACGCTGAGTATGGGATGGTGTACAAAATGTTACCAATG
ATAATGAGAACATTTCCAACGAAAAACATGGTGTGTAGATTCCGATATTT
GTCAAATAAATGTCCAAAAATTAAAGACATGGTGATCTGGGACAGaataa
agatggcggatatagcacTGTAGAATTCATCCACGTATTTCGTCTTAATG
ACATCGGTCAAGTACACGTACAGTGTGACGAAGGTTAAAGCGTACTCCAT
TCCCAGTGCAATAGATtgaatgtaaaatatttttgaagtccGTCTTCGAC
GCTTTTCCCATCCCTTGTAATCGAGcgtcattttgttttatttgattttg
ttaTCTTTACTCT Run BLAST on NCBI transcript from alignment at sc0000515:64836..66548+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025006 ID=TCONS_00025006|Name=TCONS_00025006|organism=Clytia hemisphaerica|type=transcript|length=1713bp|location=Sequence derived from alignment at sc0000515:64836..66548+ (Clytia hemisphaerica)
gcatgaaaaactgataaagaaaaaggtcataacttatatctgaaaatgaa
tatatcaggagaaaattcgaaaatttttggcaatgtgtgggatggagcat
gttgcattgcaccaacacgAAAAAATTTCTCGTGTTCCCAAgccttaaat
atttttttttcacgaatcTAATTCGTGAAGCTGGTATTAGCGTGatgctt
ttaatttttaattctcaataaaaataaataaaattcattatatttatatt
gaaaaattataaattgtctaaaGTAATTAACTCTATAACTTGTGGATGTT
GGAATCGTTTTCTCCGCCATATCAATAAAACCATAACAACACCAGTGATC
ACCAGGTACCCAGCACATATATAATGGAGATAATGGAAAGAAAAAGCTGC
CGTTAGAAGACCTATGACAGCTCCCGTCCGCGAGAACGATAAGCGGACAC
TCTCAGAGAAGGCTTGGATGCTTGATGGAATCATCCTAGACATGGTATTA
ATCAAAAACACTTCCTCCATTAAGACAACGATTGCAAACCAGAACGAATA
TCCAATCCATAACAAAATACTAACCGTCGAACCGGGTCGGTATATTTCCA
TGACCGCATACATCACCTGAATACATCCTAAACACAAAACACAGACCATA
GCTGCATAAACCAATACTTTCTCACTCACCGGATTGAACACGACGAAAAG
TAAAAATCCAGCAGCAGCAACACCATATCCAACGTTTATAATATTGATTT
CCAAGATTCCCCATTTCTGAAATTCGATTACAGCCATCGGTTGCCAGATA
TCGTAACAAACCATGCAATGCATGAAAAACAGGGAAAAGAACAGAATCAG
AACAACATCAACAGATCTAAAAAAGATTGCAAGTGTTTTTAACACTCCCA
ACTTTTCCATCATTTCtttgctaccattttgattATTCTCAACTAATGGC
ATTCCTTCCTTTTCTTCTGCGTCATCCAATCgcgtttcttcaaatttttc
atcagTCAATGACGTGTCTTCTTTAATTCCACTGCGCATGCGTGTTTCCT
TCATGTCATACTCTTTAGACAGGTTACTTACTCCAAACGTTGCAAGTAAT
TGAACAAAGATGAAcataaaagttaaaattaaacCCGATCCGTTAGCGTT
CCCAATTTGAATTCCGAGAAACTTAAAATCAGCTTTAATAAATGCGAAAT
TGATAACAGGACCTACAATGAATCCAATTGAAAATGACATCCCCATGGCT
GAGAATTGCGATAAAAGCTCTTCTTCTGGATACGATCTAGTCAGCTCTGA
CGTCATAATGGCACGTAATGAACCACCTCCACCCGAGATGAGCCGCCCTG
CAAATAAATTCCACGCTGAGTATGGGATGGTGTACAAAATGTTACCAATG
ATAATGAGAACATTTCCAACGAAAAACATGGTGTGTAGATTCCGATATTT
GTCAAATAAATGTCCAAAAATTAAAGACATGGTGATCTGGGACAGaataa
agatggcggatatagcacTGTAGAATTCATCCACGTATTTCGTCTTAATG
ACATCGGTCAAGTACACGTACAGTGTGACGAAGGTTAAAGCGTACTCCAT
TCCCAGTGCAATAGATtgaatgtaaaatatttttgaagtccGTCTTCGAC
GCTTTTCCCATCCCTTGTAATCGAGcgtcattttgttttatttgattttg
ttaTCTTTACTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025006-exon-sc0000515-1491911889:64836..66548 | TCONS_00025006-exon-sc0000515-1491911889:64836..66548 | Clytia hemisphaerica | exon |
| TCONS_00025006-exon-sc0000515-1510915933:64836..66548 | TCONS_00025006-exon-sc0000515-1510915933:64836..66548 | Clytia hemisphaerica | exon |
| TCONS_00025006-exon-sc0000515-1575043694:64836..66548 | TCONS_00025006-exon-sc0000515-1575043694:64836..66548 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000515 | supercontig | sc0000515:64836..66548 + |
Blast
The following BLAST results are available for this feature:
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