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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025001 ID=TCONS_00025001|Name=TCONS_00025001|organism=Clytia hemisphaerica|type=transcript|length=3278bpRun BLAST on NCBI protein sequence of TCONS_00025001-protein >TCONS_00025001-protein ID=TCONS_00025001-protein|Name=TCONS_00025001-protein|organism=Clytia hemisphaerica|type=polypeptide|length=468bp MPRMDQTIEPMQIDFPDVDLDREDVFVVQNPTMDLDAYAATYRKTIKIQRRun BLAST on NCBI transcript from alignment at sc0000515:35463..51204+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025001 ID=TCONS_00025001|Name=TCONS_00025001|organism=Clytia hemisphaerica|type=transcript|length=15742bp|location=Sequence derived from alignment at sc0000515:35463..51204+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000515:35463..51204+ >TCONS_00025001 ID=TCONS_00025001|Name=TCONS_00025001|organism=Clytia hemisphaerica|type=CDS|length=26733bp|location=Sequence derived from alignment at sc0000515:35463..51204+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00025001 vs. Swiss-Prot (Human)
Match: CSN1 (COP9 signalosome complex subunit 1 OS=Homo sapiens GN=GPS1 PE=1 SV=4) HSP 1 Score: 511.146 bits (1315), Expect = 3.861e-169 Identity = 268/474 (56.54%), Postives = 349/474 (73.63%), Query Frame = 2
Query: 194 TIEPMQIDF---------PDVDLDREDVFVVQNPTMDLDAYAATYRKTIKIQRLMFIAKHCPSLAVDALRICATEIKSTFNTDKYKEIITKLQEAVT------QNEGSNLPPG--QAPEIDLHWVETTDKKASMRFDRLDLDLKTYRNNSIKESIRRGHDDLGDHFLDCGHFSDALKCYSRARDYCICAAHIVNMCINVINVSIFSRNWIHVQTYINKVESVPDFFEISSLNDKHKQYNAGILAKLKCANGLAELSQKSYIKAARHFLEVSFDNLDYGQVLSPSDVAIYGGICALATFDRQELHKKVLSSSSFKQFLELQPQLRDILYKFYASQYATCXXXXXXXXXXXXXXXFLSPHVNKLYSLIRNRALIQYFSPYKSADLNRMATSFNCTVRSLEDELTQLILDGQISARIDSGKKILYARDVDQRSVIYEKALEVGKQFERKSKALVLRTIVLKNNIQVVSSNYSASKQQ 1564
+EPMQID PDV+ +VV+NP++DL+ YAA+Y ++I+RL FIA HCP+L V+AL++ + ++ TFN D Y+EI KL EA QN +P + P +D WVE T KKA ++ ++LD DLK Y+ NSIKESIRRGHDDLGDH+LDCG S+ALKCYSRARDYC A H++NMC+NVI VS++ +NW HV +Y++K ES P+ E D Q IL KLKCA GLAEL+ + Y +AA+ L SFD+ D+ ++LSPS+VAIYGG+CALATFDRQEL + V+SSSSFK FLEL+PQ+RDI++KFY S+YA+CL +L++MKDNLLLDM+L+PHV LY+ IRNRALIQYFSPY SAD++RMA +FN TV +LEDELTQLIL+G ISAR+DS KILYARDVDQRS +EK+L +GK+F+R++KA++LR VL+N I V S S+ +
Sbjct: 13 AVEPMQIDVDPQEDPQNAPDVN------YVVENPSLDLEQYAASYSGLMRIERLQFIADHCPTLRVEALKMALSFVQRTFNVDMYEEIHRKLSEATRSSLRELQNAPDAIPESGVEPPALDTAWVEATRKKALLKLEKLDTDLKNYKGNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSVYLQNWSHVLSYVSKAESTPEIAEQRGERDSQTQ---AILTKLKCAAGLAELAARKYKQAAKCLLLASFDHCDFPELLSPSNVAIYGGLCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHRMAAAFNTTVAALEDELTQLILEGLISARVDSHSKILYARDVDQRSTTFEKSLLMGKEFQRRAKAMMLRAAVLRNQIHVKSPPREGSQGE 477 The following BLAST results are available for this feature:
BLAST of TCONS_00025001 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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