TCONS_00024992 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024992
Unique NameTCONS_00024992
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length541

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024992 ID=TCONS_00024992|Name=TCONS_00024992|organism=Clytia hemisphaerica|type=transcript|length=541bp
TAAGCATTCATGTCCCCTCAACGGCTCCTGCTTGGTCGAGCGATCAGTGT
ATCAAGCGACAGTGACCTGTGACGATGAACCGGAATATGGTGAAAGATTT
TATATCGGACTGGCTGAACCCAAATTTAAGAAACGCTTTGCAAACCACAA
GTCTTCATTCGCTAATGAGAAGTACGAAAAGGAGACAGAACTTTCTAAGG
AAATTTGGAGGTTGAAACGTAAAAACCGACACCCAAAGATTACTTGGAAA
ACAATCCGTCGTTGTCCGCCCTTCAACCGTGCCTCGGTAAAATGTTCACT
TTGTCtcaatgaaaagtttgaaattgcAACATTCAACCAGCCCGACAAGC
TGTTGAACTCCAGAAACGAACTGATTTCGAAATGCCGCCACGTGAACAAG
TTCACGCTAAAACAACACGTTTCGAAAGACTGACGTCAATTGTTGTCAAA
AGAAGCCAGTACATTGTTCTTCGTAAACATTCAAAACgaactttagtttt
tttaaattttattttcaactgatgatcgtctccacggcgtg
Run BLAST on NCBI

protein sequence of TCONS_00024992-protein

>TCONS_00024992-protein ID=TCONS_00024992-protein|Name=TCONS_00024992-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
KHSCPLNGSCLVERSVYQATVTCDDEPEYGERFYIGLAEPKFKKRFANHK
SSFANEKYEKETELSKEIWRLKRKNRHPKITWKTIRRCPPFNRASVKCSL
CLNEKFEIATFNQPDKLLNSRNELISKCRHVNKFTLKQHVSKD
Run BLAST on NCBI

transcript from alignment at sc0000514:232171..232711

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024992 ID=TCONS_00024992|Name=TCONS_00024992|organism=Clytia hemisphaerica|type=transcript|length=541bp|location=Sequence derived from alignment at sc0000514:232171..232711 (Clytia hemisphaerica)
cacgccgtggagacgatcatcagttgaaaataaaatttaaaaaaactaaa
gttcGTTTTGAATGTTTACGAAGAACAATGTACTGGCTTCTTTTGACAAC
AATTGACGTCAGTCTTTCGAAACGTGTTGTTTTAGCGTGAACTTGTTCAC
GTGGCGGCATTTCGAAATCAGTTCGTTTCTGGAGTTCAACAGCTTGTCGG
GCTGGTTGAATGTTgcaatttcaaacttttcattgaGACAAAGTGAACAT
TTTACCGAGGCACGGTTGAAGGGCGGACAACGACGGATTGTTTTCCAAGT
AATCTTTGGGTGTCGGTTTTTACGTTTCAACCTCCAAATTTCCTTAGAAA
GTTCTGTCTCCTTTTCGTACTTCTCATTAGCGAATGAAGACTTGTGGTTT
GCAAAGCGTTTCTTAAATTTGGGTTCAGCCAGTCCGATATAAAATCTTTC
ACCATATTCCGGTTCATCGTCACAGGTCACTGTCGCTTGATACACTGATC
GCTCGACCAAGCAGGAGCCGTTGAGGGGACATGAATGCTTA

Coding sequence (CDS) from alignment at sc0000514:232171..232711

>TCONS_00024992 ID=TCONS_00024992|Name=TCONS_00024992|organism=Clytia hemisphaerica|type=CDS|length=432bp|location=Sequence derived from alignment at sc0000514:232171..232711 (Clytia hemisphaerica)
TCAGTCTTTCGAAACGTGTTGTTTTAGCGTGAACTTGTTCACGTGGCGGC
ATTTCGAAATCAGTTCGTTTCTGGAGTTCAACAGCTTGTCGGGCTGGTTG
AATGTTgcaatttcaaacttttcattgaGACAAAGTGAACATTTTACCGA
GGCACGGTTGAAGGGCGGACAACGACGGATTGTTTTCCAAGTAATCTTTG
GGTGTCGGTTTTTACGTTTCAACCTCCAAATTTCCTTAGAAAGTTCTGTC
TCCTTTTCGTACTTCTCATTAGCGAATGAAGACTTGTGGTTTGCAAAGCG
TTTCTTAAATTTGGGTTCAGCCAGTCCGATATAAAATCTTTCACCATATT
CCGGTTCATCGTCACAGGTCACTGTCGCTTGATACACTGATCGCTCGACC
AAGCAGGAGCCGTTGAGGGGACATGAATGCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014053XLOC_014053Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024992-proteinTCONS_00024992-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024992-exon-sc0000514-1491911889:232171..232711TCONS_00024992-exon-sc0000514-1491911889:232171..232711Clytia hemisphaericaexon
TCONS_00024992-exon-sc0000514-1510915933:232171..232711TCONS_00024992-exon-sc0000514-1510915933:232171..232711Clytia hemisphaericaexon
TCONS_00024992-exon-sc0000514-1575043694:232171..232711TCONS_00024992-exon-sc0000514-1575043694:232171..232711Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000514supercontigsc0000514:232171..232711 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.57947	2.87099	4.11856	4.06463	1.8734	1.5108	3.0225	1.92929	1.35074	1.19995	1.40743	1.49454	1.13711	1.42112	1.07621	1.03581	1.2229	1.3038	1.02236	0.740551	1.44647	1.55146	0.735146	0.44557	2.06517	2.25269	1.04518	0.517486	1.48012	0.403229
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000305GIY-YIG_SF
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024992 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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