|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024986 ID=TCONS_00024986|Name=TCONS_00024986|organism=Clytia hemisphaerica|type=transcript|length=1677bp
TTTTTCAagcaaattttgaaacttttagcaGAAAGTGATAGAAGAATAAA
TGATAACACAAAGAAAACAGCCAGCTTCATGCACAGAAGATTTAAATTTG
TTCTCAGCTCGATTGATCTCATTATTGGCGCAGGTGAAATAGAACATTCA
ATACCCAACAATGTCTATATCAAATTCAAAGAAACCAAAAAAGACCTTGA
AGTTATTTGCAATGCATGGGAGGCAAAAATAGATGTCCACCCTGATGTCG
AAATTCCAGACTTCACTAGATACCATGCTAAAGTTTGTCACACTGGAAAA
CCTGGGCGTCCTTATCTTGAAATTGATCTAGCTCAAATTGATTTATTGCG
AGATTATCACTTTAACTGGAAACAGATTTCAGGAATACTGGGTATACATA
GGTCAACACTTTGGACAAAGCTTAAGGAAAGTAATTATGAAACAACTATG
AAATACTCAGATATTTCTAATGAGCTTCTGAATGAAGAGATCAGGAAAAT
TAAGGAAACTCATCCAATGGCTGGTGAGCGAATGATTGTAGGATTCCTAA
GATCTAAAGGTTTTCGTATCCAACGTCAGAGAGTACGAGATAGTATACAC
AGTGTTGATCCATTAAATTGTTTGAACAGATGGTTTAAAAGCAATTCACG
CTGGATCTATAGCGTCCCAGGACCCAACAGTTTGTGGCACAACGATGGAT
TACATAAGTTGATTCATTGGGGAATGGTTATCCATGCATGTATTGATGGT
TACTCTCGAATGATTACTTCTCTCTAGTTTGTGCAACAAACAACTACGCA
ACTACAGCTTTGGAGGCTTTTCTTCGTGGAGTNAGTTTGTGCAACAAACA
ACTACGCCACTACAGCTTTGGAGGCTTTTCTTCGTGGAGTTGAGATCCAT
GGTATTCCAGCAAGAGTTCGTGGTGACCATGGCGGTGAAAATAATCGTAT
TAGAGATTACATGCGAAGCACTCAAGGGTACCAAGGTGCCTATATTCAAG
GCAAATCAGTCCACAACCAACGTATAGAGAGGCTTCACTATGATACAACA
CATTGTGTATTGAGCTACTTCATTGATTTATTTCGTTTCATGGAAGATAA
TGCAATCTTAGATCGAAACCATGAAGTTGGATTATTTACACTACAGTTTG
TGTATGAACCAAGAATCCAAAAATCACTTGATGAATTTAAAGAAGCCTGG
AATCATCATCAACTTTCGACTGAAAAAAACAAATCACCATATCAGGTCTG
GCTATGTGGTATGATGGATGAAAACAAAGCTTCCCAAAGGGGTGTAAGGA
GATATTTATCACCTGTTATCGAAGAGGATGAACATTATGGTATCGACCCT
TGTGCTTCACTTGGTATCATGCCATCTGATGAAACCATTGTTGAGGTCAA
TGATATTTTAAATGTCAATTCAACTGACAGCAACTATCTCAAGAATATCT
TACTAAGCGAATTCGACCCATGTTATGATGATGGAAATCATGgaataaac
ttgttttgttCTGTCTTTGAAAAAGTTTGTGAGCTAGTAACATCTTGATT
ACCTCTTTTTAGTGAAATTCTTTCAGTTTCTGAATGGTTTTTTTAGGAAA
TATGACATTTTTGCAACTACTTTTTGTGGCAGACACTAAAACAGGAAAAT
TAGTTAACAAAAAGAATTTATTCCCTT Run BLAST on NCBI protein sequence of TCONS_00024986-protein >TCONS_00024986-protein ID=TCONS_00024986-protein|Name=TCONS_00024986-protein|organism=Clytia hemisphaerica|type=polypeptide|length=258bp
FFKQILKLLAESDRRINDNTKKTASFMHRRFKFVLSSIDLIIGAGEIEHS
IPNNVYIKFKETKKDLEVICNAWEAKIDVHPDVEIPDFTRYHAKVCHTGK
PGRPYLEIDLAQIDLLRDYHFNWKQISGILGIHRSTLWTKLKESNYETTM
KYSDISNELLNEEIRKIKETHPMAGERMIVGFLRSKGFRIQRQRVRDSIH
SVDPLNCLNRWFKSNSRWIYSVPGPNSLWHNDGLHKLIHWGMVIHACIDG
YSRMITSL Run BLAST on NCBI transcript from alignment at sc0000514:167393..169069 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024986 ID=TCONS_00024986|Name=TCONS_00024986|organism=Clytia hemisphaerica|type=transcript|length=1677bp|location=Sequence derived from alignment at sc0000514:167393..169069 (Clytia hemisphaerica)
AAGGGAATAAATTCTTTTTGTTAACTAATTTTCCTGTTTTAGTGTCTGCC
ACAAAAAGTAGTTGCAAAAATGTCATATTTCCTAAAAAAACCATTCAGAA
ACTGAAAGAATTTCACTAAAAAGAGGTAATCAAGATGTTACTAGCTCACA
AACTTTTTCAAAGACAGaacaaaacaagtttattcCATGATTTCCATCAT
CATAACATGGGTCGAATTCGCTTAGTAAGATATTCTTGAGATAGTTGCTG
TCAGTTGAATTGACATTTAAAATATCATTGACCTCAACAATGGTTTCATC
AGATGGCATGATACCAAGTGAAGCACAAGGGTCGATACCATAATGTTCAT
CCTCTTCGATAACAGGTGATAAATATCTCCTTACACCCCTTTGGGAAGCT
TTGTTTTCATCCATCATACCACATAGCCAGACCTGATATGGTGATTTGTT
TTTTTCAGTCGAAAGTTGATGATGATTCCAGGCTTCTTTAAATTCATCAA
GTGATTTTTGGATTCTTGGTTCATACACAAACTGTAGTGTAAATAATCCA
ACTTCATGGTTTCGATCTAAGATTGCATTATCTTCCATGAAACGAAATAA
ATCAATGAAGTAGCTCAATACACAATGTGTTGTATCATAGTGAAGCCTCT
CTATACGTTGGTTGTGGACTGATTTGCCTTGAATATAGGCACCTTGGTAC
CCTTGAGTGCTTCGCATGTAATCTCTAATACGATTATTTTCACCGCCATG
GTCACCACGAACTCTTGCTGGAATACCATGGATCTCAACTCCACGAAGAA
AAGCCTCCAAAGCTGTAGTGGCGTAGTTGTTTGTTGCACAAACTNACTCC
ACGAAGAAAAGCCTCCAAAGCTGTAGTTGCGTAGTTGTTTGTTGCACAAA
CTAGAGAGAAGTAATCATTCGAGAGTAACCATCAATACATGCATGGATAA
CCATTCCCCAATGAATCAACTTATGTAATCCATCGTTGTGCCACAAACTG
TTGGGTCCTGGGACGCTATAGATCCAGCGTGAATTGCTTTTAAACCATCT
GTTCAAACAATTTAATGGATCAACACTGTGTATACTATCTCGTACTCTCT
GACGTTGGATACGAAAACCTTTAGATCTTAGGAATCCTACAATCATTCGC
TCACCAGCCATTGGATGAGTTTCCTTAATTTTCCTGATCTCTTCATTCAG
AAGCTCATTAGAAATATCTGAGTATTTCATAGTTGTTTCATAATTACTTT
CCTTAAGCTTTGTCCAAAGTGTTGACCTATGTATACCCAGTATTCCTGAA
ATCTGTTTCCAGTTAAAGTGATAATCTCGCAATAAATCAATTTGAGCTAG
ATCAATTTCAAGATAAGGACGCCCAGGTTTTCCAGTGTGACAAACTTTAG
CATGGTATCTAGTGAAGTCTGGAATTTCGACATCAGGGTGGACATCTATT
TTTGCCTCCCATGCATTGCAAATAACTTCAAGGTCTTTTTTGGTTTCTTT
GAATTTGATATAGACATTGTTGGGTATTGAATGTTCTATTTCACCTGCGC
CAATAATGAGATCAATCGAGCTGAGAACAAATTTAAATCTTCTGTGCATG
AAGCTGGCTGTTTTCTTTGTGTTATCATTTATTCTTCTATCACTTTCtgc
taaaagtttcaaaatttgctTGAAAAA Coding sequence (CDS) from alignment at sc0000514:167393..169069 >TCONS_00024986 ID=TCONS_00024986|Name=TCONS_00024986|organism=Clytia hemisphaerica|type=CDS|length=777bp|location=Sequence derived from alignment at sc0000514:167393..169069 (Clytia hemisphaerica)
CTAGAGAGAAGTAATCATTCGAGAGTAACCATCAATACATGCATGGATAA
CCATTCCCCAATGAATCAACTTATGTAATCCATCGTTGTGCCACAAACTG
TTGGGTCCTGGGACGCTATAGATCCAGCGTGAATTGCTTTTAAACCATCT
GTTCAAACAATTTAATGGATCAACACTGTGTATACTATCTCGTACTCTCT
GACGTTGGATACGAAAACCTTTAGATCTTAGGAATCCTACAATCATTCGC
TCACCAGCCATTGGATGAGTTTCCTTAATTTTCCTGATCTCTTCATTCAG
AAGCTCATTAGAAATATCTGAGTATTTCATAGTTGTTTCATAATTACTTT
CCTTAAGCTTTGTCCAAAGTGTTGACCTATGTATACCCAGTATTCCTGAA
ATCTGTTTCCAGTTAAAGTGATAATCTCGCAATAAATCAATTTGAGCTAG
ATCAATTTCAAGATAAGGACGCCCAGGTTTTCCAGTGTGACAAACTTTAG
CATGGTATCTAGTGAAGTCTGGAATTTCGACATCAGGGTGGACATCTATT
TTTGCCTCCCATGCATTGCAAATAACTTCAAGGTCTTTTTTGGTTTCTTT
GAATTTGATATAGACATTGTTGGGTATTGAATGTTCTATTTCACCTGCGC
CAATAATGAGATCAATCGAGCTGAGAACAAATTTAAATCTTCTGTGCATG
AAGCTGGCTGTTTTCTTTGTGTTATCATTTATTCTTCTATCACTTTCtgc
taaaagtttcaaaatttgctTGAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024986-exon-sc0000514-1491911889:167393..169069 | TCONS_00024986-exon-sc0000514-1491911889:167393..169069 | Clytia hemisphaerica | exon |
| TCONS_00024986-exon-sc0000514-1510915933:167393..169069 | TCONS_00024986-exon-sc0000514-1510915933:167393..169069 | Clytia hemisphaerica | exon |
| TCONS_00024986-exon-sc0000514-1575043694:167393..169069 | TCONS_00024986-exon-sc0000514-1575043694:167393..169069 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000514 | supercontig | sc0000514:167393..169069 . |
Blast
The following BLAST results are available for this feature:
|
