TCONS_00024976 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024976
Unique NameTCONS_00024976
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length715

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024976 ID=TCONS_00024976|Name=TCONS_00024976|organism=Clytia hemisphaerica|type=transcript|length=715bp
GTCAAATCGGAAATAGAAATTGAAATAGAAATTCTTTgcaataatatttt
ttaaagtaaataaTAAAGTTGTGTTTTCCAAAATCAACAATTCCAAAAAT
GTCACTAAAATCCATTAAAAAATATTGCTCAAGGCCTAGATGTTAACATT
TCACGAATGTTGTTTTCTTGATCTTTAACACTTTTTTGTAAATGTCCTTT
GCTTGTTTCAATGGTTTTAATTTTCTCTTCTCCATCtttaatcttctttt
tcaaatttgcacgGACATCACTTATTGGCTCTAACATAAACATACGACCA
ACTGCTTGGTAGGTACGTGTGTCTTCTGGGAGAGTTGACAATTCTTGATC
TGTTAATTTTGCATGTGTGATATTTCTAGTGAGCTGTGCTATTTGAGCTT
CGGCAAGCTTCACTTGTTGTGTCGTGGTAATGACTTTGACTTGTAATTCT
TGGAAAGCCTTTTTCAAATCCTCGTCAAAAGATGCTCCAGCCattattat
ttttgtaatttttaagaTCTATatgataacaagtgatacttttatggacc
tacctggttatcaaactaatcaatgaacattgaaacaatgaaacacataa
gactaactggtcaaaatacaaaaaataaagaaaaatgaaagcatatctat
tgggagaaactatcaacactattgaaaaagatttttgaaaaagaaataaa
aaagctattaaacgc
Run BLAST on NCBI

protein sequence of TCONS_00024976-protein

>TCONS_00024976-protein ID=TCONS_00024976-protein|Name=TCONS_00024976-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
MAGASFDEDLKKAFQELQVKVITTTQQVKLAEAQIAQLTRNITHAKLTDQ
ELSTLPEDTRTYQAVGRMFMLEPISDVRANLKKKIKDGEEKIKTIETSKG
HLQKSVKDQENNIREMLTSRP
Run BLAST on NCBI

transcript from alignment at sc0000514:49001..49715

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024976 ID=TCONS_00024976|Name=TCONS_00024976|organism=Clytia hemisphaerica|type=transcript|length=715bp|location=Sequence derived from alignment at sc0000514:49001..49715 (Clytia hemisphaerica)
gcgtttaatagcttttttatttctttttcaaaaatctttttcaatagtgt
tgatagtttctcccaatagatatgctttcatttttctttattttttgtat
tttgaccagttagtcttatgtgtttcattgtttcaatgttcattgattag
tttgataaccaggtaggtccataaaagtatcacttgttatcatATAGAtc
ttaaaaattacaaaaataataatGGCTGGAGCATCTTTTGACGAGGATTT
GAAAAAGGCTTTCCAAGAATTACAAGTCAAAGTCATTACCACGACACAAC
AAGTGAAGCTTGCCGAAGCTCAAATAGCACAGCTCACTAGAAATATCACA
CATGCAAAATTAACAGATCAAGAATTGTCAACTCTCCCAGAAGACACACG
TACCTACCAAGCAGTTGGTCGTATGTTTATGTTAGAGCCAATAAGTGATG
TCcgtgcaaatttgaaaaagaagattaaaGATGGAGAAGAGAAAATTAAA
ACCATTGAAACAAGCAAAGGACATTTACAAAAAAGTGTTAAAGATCAAGA
AAACAACATTCGTGAAATGTTAACATCTAGGCCTTGAGCAATATTTTTTA
ATGGATTTTAGTGACATTTTTGGAATTGTTGATTTTGGAAAACACAACTT
TAttatttactttaaaaaatattattgcAAAGAATTTCTATTTCAATTTC
TATTTCCGATTTGAC

Coding sequence (CDS) from alignment at sc0000514:49001..49715

>TCONS_00024976 ID=TCONS_00024976|Name=TCONS_00024976|organism=Clytia hemisphaerica|type=CDS|length=366bp|location=Sequence derived from alignment at sc0000514:49001..49715 (Clytia hemisphaerica)
atGGCTGGAGCATCTTTTGACGAGGATTTGAAAAAGGCTTTCCAAGAATT
ACAAGTCAAAGTCATTACCACGACACAACAAGTGAAGCTTGCCGAAGCTC
AAATAGCACAGCTCACTAGAAATATCACACATGCAAAATTAACAGATCAA
GAATTGTCAACTCTCCCAGAAGACACACGTACCTACCAAGCAGTTGGTCG
TATGTTTATGTTAGAGCCAATAAGTGATGTCcgtgcaaatttgaaaaaga
agattaaaGATGGAGAAGAGAAAATTAAAACCATTGAAACAAGCAAAGGA
CATTTACAAAAAAGTGTTAAAGATCAAGAAAACAACATTCGTGAAATGTT
AACATCTAGGCCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014037XLOC_014037Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024976-proteinTCONS_00024976-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024976-exon-sc0000514-1491911889:49001..49715TCONS_00024976-exon-sc0000514-1491911889:49001..49715Clytia hemisphaericaexon
TCONS_00024976-exon-sc0000514-1510915933:49001..49715TCONS_00024976-exon-sc0000514-1510915933:49001..49715Clytia hemisphaericaexon
TCONS_00024976-exon-sc0000514-1575043694:49001..49715TCONS_00024976-exon-sc0000514-1575043694:49001..49715Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000514supercontigsc0000514:49001..49715 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
202.644	192.094	96.6842	79.6369	74.8576	49.8747	118.61	118.381	122.856	97.1063	84.8538	82.5855	69.7507	70.4831	91.5968	97.2694	130.673	131.71	60.2177	53.3355	89.8594	81.026	124.442	113.207	85.3998	91.4444	80.566	60.2371	62.1438	63.1019
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002777PFD_beta-like
Vocabulary: Molecular Function
TermDefinition
GO:0051082unfolded protein binding
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
Vocabulary: Cellular Component
TermDefinition
GO:0016272prefoldin complex
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006457 protein folding
cellular_component GO:0016272 prefoldin complex
molecular_function GO:0051082 unfolded protein binding
Blast
[Close]
BLAST of TCONS_00024976 vs. Swiss-Prot (Human)
Match: PFD1 (Prefoldin subunit 1 OS=Homo sapiens GN=PFDN1 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 5.257e-26
Identity = 62/118 (52.54%), Postives = 81/118 (68.64%), Query Frame = -3 
Query:  135 GASFDEDLKKAFQELQVKVITTTQQVKLAEAQIAQLTRNITHAKLTDQELSTLPEDTRTYQAVGRMFMLEPISDVRANLXXXXXXXXXXXXXXETSKGHLQKSVKDQENNIREMLTSR 488
             A  D +LKKAF ELQ KVI T Q+VKLA+ QI QL R   HA LTD E+ TL ++T  Y+ VGRMF+L+    + + L +K K  EEKIK +E  K +L++SVK+ E+NIREML +R
Sbjct:    2 AAPVDLELKKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFILQSKEAIHSQLLEKQKIAEEKIKELEQKKSYLERSVKEAEDNIREMLMAR 119
The following BLAST results are available for this feature:
BLAST of TCONS_00024976 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PFD15.257e-2652.54Prefoldin subunit 1 OS=Homo sapiens GN=PFDN1 PE=1 ... [more]
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