TCONS_00024973 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00024973
Unique Name	TCONS_00024973
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1243

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000514:175604..181490-

transcript sequence

>TCONS_00024973 ID=TCONS_00024973|Name=TCONS_00024973|organism=Clytia hemisphaerica|type=transcript|length=1243bp
ATTAAGTACACATTTCGATTTTTATACAAAGTTGTTgagttataattttt
ttaaattcacggtccaattaaatttaaaattctaGAGATGGTTCTGTGTG
CAAAATTTACCTTTTCAGCGCCGCAGATTTTGTATAAAAGACCATGATTT
TACGATTAAAACATGCATCTTACAAGGGAGAGGAAGAAGGTCAAGAAGGA
TAAAGAAGAATCAAAGATGatgaagtttttcattttcactttgcTCACAG
CTTATGTTGTTTGTAACAACCCCGAAGAAGGGGACATGATTGAAGGAGAT
ATGGAACTTGACCCTGACCAAATGTCTGCTTACATGGAACAAATGGAGAA
AGCCGGAAACACTTTTGCTGCCATCAAATCTAACTTGTGGCTTACCAACG
GAAAGGCCGATACCATTAAATACTACATTGATCCCCAAATTAGTGGAGCA
ACTAACGCCATCAACCAAGCTATCAATGATTACCAAAGATACACCTGTAT
CCGATTCTCCAAACAATCAGGACGACCAAGAGGTCCACATATCTTCTTTA
CCACTGGATCCGGATGTTCTTCACCAGTCGGTCGTGGACGTTCAGGAAAC
AGCATTCGTCTTGCAAGGGGATGTTGGCGTAAGGGAACAATCATCCATGA
AATTGGACATTCCATCGGTCTCTTCCACGAACAATCAAGaccagatcgTG
ATAACTACGTCACCATCAAGTTGCATAACGTAGTCGACCGTGCTAgattc
aatttcaacaaaatgaGATCAGATCAATGGGACTCAAAGGGAACGCCATA
CGATTATGACAGTGTCATGCACTACGGATCTTATTTCTTCTCCAAAAACC
GACAAATGACAATCGTAACAAAGAACTCACGTGACCAAAGTCGTATTGGA
AGCCGATCCGGATTCTCGACAACTGACAAAGTCCAAATCAACAAAATGTA
TTGCAGTGGAGGATCAGGATCAGGCGGCAACGGAGGTTCAACATGCGCTG
ACAAAGATTCCCGATGCCGACACTGGACCAACTATTGCCGATCAAACAGT
TACGTCAAAACCAACTGTCGAAAAACTTGCAGAATCTGTTAAAAACGCCC
TTGAAACTTTTGTAATGTTTCATTTCTTTGTAGTATTTAACATAATTATT
CTTATTCACAAGACATAATTGTTTATCCTTCTTAAAAGATTTGTTTTATG
TTGTTGTAGGTTTTTGATTTACGGAAGTCTAACATTCCATGCT

Run BLAST on NCBI

transcript from alignment at sc0000514:175604..181490-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00024973 ID=TCONS_00024973|Name=TCONS_00024973|organism=Clytia hemisphaerica|type=transcript|length=5887bp|location=Sequence derived from alignment at sc0000514:175604..181490- (Clytia hemisphaerica)
ATTAAGTACACATTTCGATTTTTATACAAAGTTGTTGAGTTATAATTTTT
TTAAATTCACGGTCCAATTAAATTTAAAATTCTAGAGATGGTTCTGTGTG
CAAAATTTACCTTTTCAGCGCCGCAGATTTTGTATAAAAGACCATGATTT
TACGATTAAAACATGCATCTTACAAGGGAGAGGAAGAAGGTCAAGAAGGA
TAAAGAAGAATCAAAGATGATGAAGTTTTTCATTTTCACTTTGCTCACAG
CTTATGTTGTTTGTAACAACCCCGAAGAAGGTACAGTTTGTTTTGATTTT
CTTTTGATTTGAGGTATTGTGTTTTGATAATGCAAATAGCCACCGAAGGA
AAAACTTTCGAGAAATTTGCTTACAAGGTGCAAACATTGCAAGAGTTTTT
TTCTTTAACCGTTCAAACCCGAATGGCGTTTTAAAATAGCCAATAAACCA
AGTCCCAGACTTAAAGCTATAATTCCTGACCATTTGATTTAAACTCTCAG
GTTATAAGCTTTTATGCCAGTTTGAAGTTTTAGATTTCAGAAAAAAGATA
ATGAATTTTCACATTTTTCAAAAACTTGTTATTACTTAATAACAAGCATG
TTTTGTTTCTTTTATAGCCCTTGGGAATTACACAACAAAGCGAGATTTTC
AAAAGATAGAAACCTTGCTCTTAAATTTTTCTTTACATAATTACTCCCAA
AACCTAGAAAATCAAGGATAAAGACCTCCCGTAAAATCCTTCCTCGACTA
ACGAATTTCTTTCTTTTACTTTTTCAAGGGGACATGATTGAAGGAGATAT
GGAACTTGACCCTGACCAAATGTCTGCTTACATGGAACAAATGGAGAAAG
CCGGAAACACTTTTGCTGCCATCAAATCTAACTTGTGGCTTACCAACGGA
AAGGCCGATACCATTAAATACTACATTGATCCCCAAATTAGTAAGTGGAA
TAAGCTAAGTTATGTTACTTTGCTGCATGTCCATTTTCAAACATCTACCC
ATTTGAAATTGATTATATGGATATTATAATACTGATTTTTTATAGCAACC
AAGGCCAAATAGTTAAGATGAATTTGACACAAAATGATCAGATAGAGTAG
AAATTGCGGTACTAATTCCAAATTATTTAACAATCGCTATTTGCTACTCA
CTAAATCTTTTGACTTACCTAAAAGTATTCTTTTTCCTTGTAGGTGGAGC
AACTAACGCCATCAACCAAGCTATCAATGATTACCAAAGATACACCTGTA
TCCGATTCTCCAAACAATCAGGACGACCAAGAGGTCCACATATCTTCTTT
ACCACTGGATCCGGGTAAGTTCCTTTTCTAGTTATAAGAATTTTTTGAAA
GAGTCATGAAGTCTCGGTAATGAAACTTATCTTCACTCTGCTCCTTGTTC
TCATACTTTTGTCAATTCTATTTTTTTAGCATAAGAAGATTTTTAGCATA
TCTCAAAAACAATATTTATCTCTCAAGAGTTTGTTTCCAAATTTTGACTA
AGTAAGTACTCAATTCCTTAAAAAAATTTTTACCACAGATGTTCTTCACC
AGTCGGTCGTGGACGTTCAGGAAACAGCATTCGTCTTGCAAGGGGATGTT
GGCGTAAGGGAACAATCATCCATGAAATTGGACATTCCATCGGTCTCTTC
CACGAACAATCAAGGTAAAGGTTATTTAGTGAACAGTGGGGAAAAATATT
TTTAGACTTTCAGGATCAGTGTCGATCTTTTACCAAGAGCCGCTTACATC
ATTTTTTGATTTTACTGGTAGACACGATAAAATACCTTTTGTAAGCACTA
TCAGACCCGGGGGGTACTACCCTTGTCGACCGACGGGGGTGCTCCGCTGA
CGTTCGAAAAATGGACCCTACGTGGGACTCGAAATTTGCGAAAAAAGTGA
CCCTGNACTCGTGGAGGTCAAAAAAGGTACCCTGACCAGCGGAGCATCCC
CGTAACCCATCTTGCCCTAGTACCCCCAGGCTATCAGAATTATAAAAAGC
GAACAAGAGGAATAGGTCAATTTGGTGAAAAGCGAGACAATAGCTTCTAG
ATATTCACATTCTTGACTGTGTGAAACCCCCTACCTACTGGAAAATTTAT
CCGGAAAATTCCCTTTCCTTCTAATATCAAATCTGCGTACTGTACTCCTT
ATTTGTGCGCGAGTGTTTATGATGCCATTATGGTGGCGTTCTAATAGTTT
TCCCTAAAGTATCTACTACTGTCTTTTCATCCCAAAGAGAGACACCGGAG
CAATTTTTATCTGAACATCGACTAGTTGAATGAGGCTATTAATTGTCTAT
TTTACAGACCAGATCGTGATAACTACGTCACCATCAAGTTGCATAACGTA
GTCGACCGTAAGTACCTAAGACATTTTAGTCTGCATATAATGACCCTTCT
AGACTAGGCTCTAGTCATGTTAGAAGAGACAGCAACAACTATTTTTGAGT
TTTGATGTTATGATAAACATACTCTTTTTAAAATTTACTTCAAAAAAGAT
CATGTGAAATCTGTACCAGCATTGTTTTATCCAGCGACGAATTTCACAAT
TCAGGGGGCAAAAGAAGACCCTTAGTCACAGGGATGAATTAGTGTCTACT
CTTTAATAACAAAGAAGGTTTACGAATTTAAAAGAAAAACAACTATCGCG
GATAACATCAAAGAAATAGTTTTCTACCACAAAGTATGAGCATCTAAGGA
CTTGATATCGTTATTTTTCCAGGTGCTAGATTCAATTTCAACAAAATGAG
ATCAGATCAATGGGACTCAAAGGGAACGCCATACGATTATGACAGGTACG
TTATCTCCATGTTCATTTAACGTTATATGAACGGCTTTTTGCCCGCAGGG
GCTTATGTTGCTTCAGGTAGCGGAAATGATCGCTGGAAAAAAGTTTATCG
TGTTGTTTCACAATCAGAACTGTAGTTGCACTTACTCAACCTCGTCCCCG
TGTGTCCCAGGCTTTATTTACGTTACTTATGGACGCCAGAGAATACCCTG
GTGTTGGCTGATGCGAGTTAGAGGGGGAACTTCTCAAAACAATACGTCAT
AAAAAAAATTGACGTTACAAAGTTGCACTGCAATGCAATGGTTTCAAACC
CAGGAACAAATGAAATCTGACGTTTTGTTTTTGAATTACGTAATCATACG
CGTTCGAAAACCAGCCAATGCCTGGGTATTATCTAGCACTATCAGTAGTA
AGCATCAAAAGCTGATAATACGCAGGGAACGAGGTTGGCACTTACTAAGA
AAGTTCACGCTCTTTTCGCACAACTTTTGTCTCACTTACTATCGCAAAAT
GGCGTTTGGGCTACTTTATAAAAAATAAATCAATAACTCTTGATAGACGG
CCATATATCTTTCGGTAATTGGTTCTTACAAGGAAAATAAGAGGTTGCGT
ACAATGTCATCATATTAATCTATATGCTATCAAAATGGTGGGATTTTAGT
GAAACTATGAATAGTTATAGCCTTTAGAGAAGTCGATGTCATCCCAGAGG
CTTTTGTCGACGAGACAATCTATAAAATTATTTTTATTCGCATCAACACC
AATTCCCCTCAGCTCTTTTTGAACGCTGACAAACTCACACAGCTCGAGTA
GCATATTTACGTAAATCAATCATTTTAGTTTAGCAACGAAAGTAGAAAAT
ATTCTATGCGTGCACTGAGCTGTACAACTCATTTCTAATTATCTGAACTA
GCCAATGCAGAGAAAGAAAACATTCGATATTGTGTTTGCGCGCCATTTTT
TCAATGTTTTAAATGAAAAACGTTCAGCGAAACTCGTAACTCTCAAGCGG
AATGTTTTTGATGGCGTTCAATTAAAGCTATTTGCTGGAATGTGGCCTTT
AACGGCTCTGGTCATAGTGAAAGAATTCGAAGATAAAACCTTATGTTTTC
GCTTCTTTGACATGTTTAAGAACAAACTGCTTTTGAAAAAATGAATTTAA
GTAATTACATCATGAGTAATTAAGGAATAAGTGTGGCATGGATCTTAATA
AAACGTCATAACGACGCTATTCATATACTTTTCACACAAAAAGCCTAATC
TCCTTGGGGAAATCATTTTATTGTTTCAAACTTCTTTTAAGTTAATGACA
AATAATTTCTTTATTTAAATTTAGTGGAGAAAATTGCCAAAAATAAGTTT
TTTTTGAGATTTCAAAGGAAAGATACTTCCACAAAAATTTTCCGAAATTG
TGTTTTAGATACTAAATAGATACATCACCTGATCCAAAAAAAAATTCCAA
AATGTTTGATTTTTACCGAGATTACGGCTTTGAAAGGTGAAATACCCTTC
TTCGAAAAACTCTTCGTTTTCTTCTTCCTTTAATTTTTTCATTTCAATTT
TTCGATTTTTAAATTCTACAAAGGTAGGTTTAACAGGACATATAAAAAAA
GTTATACATTAATCTTTTTTAAATGCAGAAATTGCCATTTAAGTTGGTGT
AAAATCGAAAAAATGTCCAGAGCCCTTAAACTTGCGTTCTCGATTATCAA
TGCGTTCGCGGGACATTCATAGCGACAGCTATTTGGTAGTTGATAAGAAC
TTGCAAACATGGTCTATAATTCGGTTGTTTTTATTTTTCGCGATTTCAGA
CTTCAATGTTCTCGAAATTCTTGCAACACTGAACGCTTACTTCCTACCCT
TACCGGATTTTATCAATGTTTTTTTTACCGCTAGAGAGACTTAATGAGGT
TGAATTCCGTGACTCTTGAGAGACTTTTTTGACCTACTCCTGGGTCCATC
ATACTACTGTATGACCATAGTTAATTATGCAGATATAAATCATACATGCT
TTCAAACTACTTCTTTTAGTGTCATGCACTACGGATCTTATTTCTTCTCC
AAAAACCGACAAATGACAATCGTAACAAAGAACTCACGTGACCAAAGTCG
TATTGGAAGCCGATCCGGATTCTCGACAACTGACAAAGTCCAAATCAACA
AAATGTATTGCAGTGGTAAGTTCGAGTGTCTATTTAACACCTCTGAACCG
ATAAGAAGTTTTCACGAGCTATAGGAATAATTGAGGGGGAGATGAAACAA
AATTTGCAACAAAAAGAATCGGGTAAAAAGCAATAGAGAATGATAAATTC
CCTATCCCGACCTATAGAAGTGATGGCACCATCCCAGGTTTTTGATTCAT
CCTTTTATATTGTGGAGCGATGAATGGTCTGTGTCGCATTTATTGTGGAA
ATAAAATAATAGATAAGAAAATGGTCCTTTCTCTATGTGAAATTGAAAGA
TCAGAATGTAAAAGGGGGTCGGGTGGTGAAAAACAGCTGTCTTTTTGATG
AAGAGAGATATCAAATTTTAATGTTCTCAATGAGGTCGATGATAAAACGG
AAGAGTTTAAAAATAATCTAATATTTCCAATATTCCCTAAACATGGAAAA
TTGGGACAAATGCCAATCAAAAATAAAGAGACTCTTCCATTGACAGCCGA
AATTATTTCTAAAAAACTTACTAGAGGAGGAGATGGTACTAATAACAAAT
CGAGAAATTTAAAAACGCTAGAAAGTGTTTATTGCCACAAAAACTTCACT
TGATCTCTGGCTCCTTTTTATTTGAATCTAAAAACTTGATTCTATATATT
AGGAGGATCAGGATCAGGCGGCAACGGAGGTTCAACATGCGCTGACAAAG
ATTCCCGATGCCGACACTGGACCAACTATTGCCGATCAAACAGTTACGTC
AAAACCAACTGTCGAAAAACTTGCAGAATCTGTTAAAAACGCCCTTGAAA
CTTTTGTAATGTTTCATTTCTTTGTAGTATTTAACATAATTATTCTTATT
CACAAGACATAATTGTTTATCCTTCTTAAAAGATTTGTTTTATGTTGTTG
TAGGTTTTTGATTTACGGAAGTCTAACATTCCATGCT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_014033	XLOC_014033	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000514	supercontig	sc0000514:175604..181490 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.102933	0	0.116547	0	0.231353	0.359222	0	0.082595	0.0584353	0.107442	0.104285	0.166394	558.135	684.621	12.4543	33.1291	377.12	419.305	2750.91	2555.45	1893.85	1881.11	1226.98	1421.89	2602.6	2656.99	0.0940948	0	0.184871	0.0470886

Blast

[Close]

BLAST of TCONS_00024973 vs. Swiss-Prot (Human)
Match: MEP1B (Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=1 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 4.726e-28
Identity = 80/227 (35.24%), Postives = 110/227 (48.46%), Query Frame = 1

Query:  283 DMIEGDMELDPDQMSAYMEQMEKAGNTFAAIKSNLWLTNGKADTIKYYIDPQISGATNAINQAINDYQRY---TCIRFSKQSGRPRGPHIFFTTGSGCSSPVGRGRSG-NSIRLARGCWRKGTIIHEIGHSIGLFHEQSRPDRDNYVTIKLHNVVDRARFNFNKMRSDQWDSKGTPYDYDSVMHYGSYFFSKNRQMTIVTKNSRDQSRIGSRSGFSTTDKVQINKMY 951
            D+ EGD+ LD  Q+           N+    K   W       TI Y ++  +    NA    +N ++RY   TCI F   +G      +F   GSGC S VG  R G   + +   C R  T+ HE  H++G +HEQSR DRD+YV I    ++     NFN    D  DS   PYDY SVMHY    F    + TIVT+ S  +  IG R  FS +D +++N++Y
Sbjct:   47 DLFEGDIRLDRAQIR----------NSIIGEKYR-W-----PHTIPYVLEDSLE--MNAKGVILNAFERYRLKTCIDFKPWAGETNYISVF--KGSGCWSSVGNRRVGKQELSIGANCDRIATVQHEFLHALGFWHEQSRSDRDDYVRIMWDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAFQNGTEPTIVTRISDFEDVIGQRMDFSDSDLLKLNQLY 253

The following BLAST results are available for this feature:

BLAST of TCONS_00024973 vs. Swiss-Prot (Human)

BLAST of TCONS_00024973 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MEP1B	4.726e-28	35.24	Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=...	[more]

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TCONS_00024973 (transcript) - C. hemisphaerica