TCONS_00024972 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024972
Unique NameTCONS_00024972
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1483

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024972 ID=TCONS_00024972|Name=TCONS_00024972|organism=Clytia hemisphaerica|type=transcript|length=1483bp
ATTGCTAAAGCAGCGTCGCGGATCAGAAAAACTATTAATAACGAGAATAC
CCCCATTCCAAGGTACACCAAAGGAGGATCTTCAAAATCCAAAGCCACCC
AATCGAAAAGTTATTCCTTTCAATTGACTATTTTTTATTACCCTGGAAAA
GAAATCATGGATAAACTTGACGTTGAAGAAGTTCCTGAACAGTCCTTCAC
TTCATTAGGATCAGGGGCCTGTATGTTGGAAGAAACCTTAAACGAAAGAG
AAGTGAAAAATGAAATGGTGACATTGATGGCTAGCTTGTCAAAAAAGAAG
GAAGACTTTTTTCAAGACTTGGAAATCACCTACTTACAGAAACAGGGGAA
TAGAAAATTTTACAAGACacgattttttaacaaaaagtttcagtttaATA
CCAATGGACTGAAAACGATCGGAGGGAAAGACACGAAGAAAGTGTTTATT
gtgataaacaaaaataaaccttCATCAGTTGCTTCAAATTTTAAAGAGCT
GTTGAAAAGCCATCGAGACAGTAATGCTCCTGAGATTTCTGATTACAGCC
ACAGTGATTCCTCTGACGACGATTTTCAAAAGTCTTCACGAATATTTCCT
TCATCACCAATGTCTCCCATACAACCAtcgaagaaaaggaaaaaatcaaa
tttgttccCTGACGATATACCCTTAGCTACACCTGTTATGAAATCGTCAC
CATTGGAAATAATATTGACGTTGCCCTCTCTAACTGGTTATCAAACATCC
AATGAGCATGAAAAACTTATCTCTGTATTAATGATGTTGCGCCATTTCAA
TGGATTTTTTAATGCTGTTTGTGAGGCCATCAAGGTCAAAGGTGAAGATG
CCGCAGACATTGAACACTTGTTTGCTCAGGTAAAAGTCTTTCAATAAGAT
TTATATGCTAATCGAGGACTCATCACTGCATGGTTTGCAGTCAACTTTAA
CTGATCTTGAAATGGAACTTGGAATATTTTCATATGATAGCTGTCATACA
TGCTATTCAAAAATAATAACTTCGCTCAAAAACCTCAAATGTGAAATTtg
gaatgattttttcctaAAGGCTCTTTCTTCCGATACAATCACCGAATATT
ATTCTACCAAAGGAAGTTTTACTAAAGAGGAAAAAGATACAGTTTGCGTT
GTTTTGGATGCAGATGGTACAACCGTGGTAGATGTTATCAACAATACGAA
TAAAAGCACTATGATTCCTATCCGTATGGTACCACATGATGTTGATCAAC
AAATTCATGAAGATGGTAtatgtttttttgtttaaaagtcaaaaaagaga
TATAAAAGTATTTTTAGTTCAGGCTTAAAAGGTTTCATACCAAAATTAAA
GTTCCCgcaattgcaaaattttgaaatgagaaTAATTACGGGTATGTATT
ATGTCTCTCAAAATCCGGAAATCCGCAAGATTAAAttccacaaaaaaaaa
ttggcacactgaaaaaattgctataactcAGCC
Run BLAST on NCBI

protein sequence of TCONS_00024972-protein

>TCONS_00024972-protein ID=TCONS_00024972-protein|Name=TCONS_00024972-protein|organism=Clytia hemisphaerica|type=polypeptide|length=298bp
IAKAASRIRKTINNENTPIPRYTKGGSSKSKATQSKSYSFQLTIFYYPGK
EIMDKLDVEEVPEQSFTSLGSGACMLEETLNEREVKNEMVTLMASLSKKK
EDFFQDLEITYLQKQGNRKFYKTRFFNKKFQFNTNGLKTIGGKDTKKVFI
VINKNKPSSVASNFKELLKSHRDSNAPEISDYSHSDSSDDDFQKSSRIFP
SSPMSPIQPSKKRKKSNLFPDDIPLATPVMKSSPLEIILTLPSLTGYQTS
NEHEKLISVLMMLRHFNGFFNAVCEAIKVKGEDAADIEHLFAQVKVFQ
Run BLAST on NCBI

transcript from alignment at sc0000514:163637..166867-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024972 ID=TCONS_00024972|Name=TCONS_00024972|organism=Clytia hemisphaerica|type=transcript|length=3231bp|location=Sequence derived from alignment at sc0000514:163637..166867- (Clytia hemisphaerica)
ATTGCTAAAGCAGCGTCGCGGATCAGAAAAACTATTAATAACGAGAATAC
CCCCATTCCAAGGTACACCAAAGGAGGATCTTCAAAATCCAAAGCCACCC
AATCGAAAAGTTATTCCTTTCAATTGACTATTTTTTATTACCCTGGAAAA
GAAATCATGGATAAACTTGACGTTGAAGAAGTTCCTGAACAGTCCTTCAC
TTCATTAGGATCAGGGGCCTGTATGTTGGAAGAAACCTTAAACGAAAGAG
AAGTGAAAAATGAAATGGTGACATTGATGGCTAGCTTGTCAAAAAAGAAG
GAAGACTTTTTTCAAGACTTGGAAATCACCTACTTACAGAAACAGGGGAA
TAGAAAATTTTACAAGACACGATTTTTTAACAAAAAGTTTCAGTTTAATA
CCAATGGACTGAAAACGATCGGAGGGAAAGACACGAAGAAAGTGTTTATT
GTGATAAACAAAAATAAACCTTCATCAGTTGCTTCAAATTTTAAAGAGCT
GTTGAAAAGCCATCGAGACAGTAATGCTCCTGAGATTTCTGATTACAGCC
ACAGTGATTCCTCTGACGACGATTTTCAAAAGTCTTCACGAATATTTCCT
TCATCACCAATGTCTCCCATACAACCATCGAAGAAAAGGAAAAAATCAAA
TTTGTTCCCTGACGATATACCCTTAGCTACACCTGTTATGAAATCGGTAA
AAATTATTTGCTATTGATAAGAATATAATTTAATTCTGCTTGTCATCAAC
TTCAAAAGCATAAGCAAAATCTGATCATATTTCCTATATTACACATAAGA
TAAGAGCTAGTGTTTAATGGAAGCAGTCTGATTGATGGGAGATCAATTTC
GCTCCTTAAATCAGCTAATTTATGTGTTTGGTGTGTCTTTCCTTTACTTA
ACATAACATTAACAATCATGAAATCAATATTCTTGATAATTAAATGATCT
TGGCTCGTTTTATCAAATGAAATTATAGTGTAAGAGTTAATTTTTCCCTC
TTATTTTCAGTCACCATTGGAAATAATATTGACGTTGCCCTCTCTAACTG
GTGAGAAAATTTTGTTCATACAGAGTGCTCATTAAAGAGTAAATCTGTGT
ACGTGAAGTTTTCAAGGCATAATTTATTTGAATGATTTACAATAATGACA
TTCTTGAAAGTAAAGGGACAAGATGGAGTTTTTACAAGCTCTTATTTGAC
CAGTGTTATAAGTTAACCAGTAATAGAACAATTTTGTACCTTTTTCTAAA
GAACGCGTCATTTTTATTACTTCAAATGACCAATCATTAAAGTATCTTAT
AAGAACTCCATCTCATCTGAAAGTAAATACCACCAGATATCTCTTGTTCA
ATACTTGGTATCCTTCAAAATTCTATCTGACCAGGCGATGTCAATCGAAG
CGAATCAAATTCTTAAATTGGCAATCAAATCAATTGAATTAAAATCAACT
GATTGAATTTGAATTTAATTCGGCCAATCGAAGTGCATTAAAAGTAAAAA
AAATGTAAATTTTTTTGTTATTCGATTAACTTCGATTGACTTCGTTTGAT
ATTCGATCGACTTCGATTCTACTTATTTCAGCTTCGACATATTGACTTAA
ATGCTCTTTGTTCAATTGACATCGTCGAGACTCGTTTATGAAAAACTTCT
ATACTAAAATCCTACAATGGTGTTTGTTTCTTTAGGTTATCAAACATCCA
ATGAGCATGAAAAACTTATCTCTGTATTAATGATGTTGCGCCATTTCAAT
GGATTTTTTAATGCTGTTTGTGAGGCCATCAAGGTCAAAGGTGAAGATGC
CGCAGACATTGAACACTTGTTTGCTCAGGTAAAAGTCTTTCAATAAGGTA
ATCCCAGCTATTTATTTTTGCTTTAGGGACCATTGACAAGAGATTTTTCT
TAACGGCTTGAAGCCGCTTTAGGGGGTGAGGTGGCAAGTCTGCCGGTGAA
AAAAAGTTAAAAAAGAGAAAAGCTCACGTTGATTGAAACACTTATCAGCT
GAAAAATTCTGAAAATTTCCCTATCGAACGTCTTCGAAGTGTCTTGTTCC
AAGAAAGGGTGGCAAAAATAATCCGTGTATGTATGTCGGCAGCCATTCCT
TTGACTGGATTTATGGTTTCGAAATTGGCAGGTTACAGCTCCATGACCAT
GATCATGCATAAGGCCCCAACTTTATTATTTTCTATTTAGATTTATATGC
TAATCGAGGACTCATCACTGCATGGTTTGCAGTCAACTTTAACTGATCTT
GAAATGGAACTTGGAATATTTTCATATGATAGCTGTCATACATGCTATTC
AAAAATAATAACTTCGCTCAAAAACCTCAAATGTGAAGTAAGTATGATTG
CATTTAGTCACAAAAATATGCAGCAAGAGTTTTTACTACTGAAGAAGTAA
TATTGGAATGTTGATTTAAATTTGGGTTTCTTTGTGAAAATGTTCTCCTG
TACCATCACATTACACAATTCATTATAGTCAAGTTTTCTTTCTTATAGAT
TTGGAATGATTTTTTCCTAAAGGCTCTTTCTTCCGATACAATCACCGAAT
ATTATTCTACCAAAGGAAGTTTTACTAAAGAGGAAAAAGGTACTTTGAAT
TTTTCTGGCGCTACAAATTGACCTGACTTTTTATCTCAAAATAATCTGCA
GCTGCGACATCGTAACTTTTGATATAATTCGATGGAGTCATCAAACAATC
ATCATCATCATTGTGAAATAGTTTTAATCTAAAGATGTTCTTGCTGTTTA
CTACTGTATATAGCCAACCAACTACAAACTTTGTTTGATATGTTTGATAG
CTATTAAAAATTGTAGCTTTTTGTTTGAACTGCATATAATTTTGATTTTG
ATTTCTTTATGAGCTTATTTGCTTTCTCCTTTAGATACAGTTTGCGTTGT
TTTGGATGCAGATGGTACAACCGTGGTAGATGTTATCAACAATACGAATA
AAAGCACTATGATTCCTATCCGTATGGTACCACATGATGTTGATCAACAA
ATTCATGAAGATGGTATATGTTTTTTTGTTTAAAAGTCAAAAAAGAGATA
TAAAAGTATTTTTAGTTCAGGCTTAAAAGGTTTCATACCAAAATTAAAGT
TCCCGCAATTGCAAAATTTTGAAATGAGAATAATTACGGGTATGTATTAT
GTCTCTCAAAATCCGGAAATCCGCAAGATTAAATTCCACAAAAAAAAATT
GGCACACTGAAAAAATTGCTATAACTCAGCC

Coding sequence (CDS) from alignment at sc0000514:163637..166867-

>TCONS_00024972 ID=TCONS_00024972|Name=TCONS_00024972|organism=Clytia hemisphaerica|type=CDS|length=2691bp|location=Sequence derived from alignment at sc0000514:163637..166867- (Clytia hemisphaerica)
GTTATCAAACATCCAATGAGCATGAAAAACTTATCTCTGTATTAATGATG
TTGCGCCATTTCAATGGATTTTTTAATGCTGTTTGTGAGGCCATCAAGGT
CAAAGGTGAAGATGCCGCAGACATTGAACACTTGTTTGCTCAGGTAAAAG
TCTTTCAATAATCACCATTGGAAATAATATTGACGTTGCCCTCTCTAACT
GATTGCTAAAGCAGCGTCGCGGATCAGAAAAACTATTAATAACGAGAATA
CCCCCATTCCAAGGTACACCAAAGGAGGATCTTCAAAATCCAAAGCCACC
CAATCGAAAAGTTATTCCTTTCAATTGACTATTTTTTATTACCCTGGAAA
AGAAATCATGGATAAACTTGACGTTGAAGAAGTTCCTGAACAGTCCTTCA
CTTCATTAGGATCAGGGGCCTGTATGTTGGAAGAAACCTTAAACGAAAGA
GAAGTGAAAAATGAAATGGTGACATTGATGGCTAGCTTGTCAAAAAAGAA
GGAAGACTTTTTTCAAGACTTGGAAATCACCTACTTACAGAAACAGGGGA
ATAGAAAATTTTACAAGACACGATTTTTTAACAAAAAGTTTCAGTTTAAT
ACCAATGGACTGAAAACGATCGGAGGGAAAGACACGAAGAAAGTGTTTAT
TGTGATAAACAAAAATAAACCTTCATCAGTTGCTTCAAATTTTAAAGAGC
TGTTGAAAAGCCATCGAGACAGTAATGCTCCTGAGATTTCTGATTACAGC
CACAGTGATTCCTCTGACGACGATTTTCAAAAGTCTTCACGAATATTTCC
TTCATCACCAATGTCTCCCATACAACCATCGAAGAAAAGGAAAAAATCAA
ATTTGTTCCCTGACGATATACCCTTAGCTACACCTGTTATGAAATCGGTT
ATCAAACATCCAATGAGCATGAAAAACTTATCTCTGTATTAATGATGTTG
CGCCATTTCAATGGATTTTTTAATGCTGTTTGTGAGGCCATCAAGGTCAA
AGGTGAAGATGCCGCAGACATTGAACACTTGTTTGCTCAGGTAAAAGTCT
TTCAATAATCACCATTGGAAATAATATTGACGTTGCCCTCTCTAACTGAT
TGCTAAAGCAGCGTCGCGGATCAGAAAAACTATTAATAACGAGAATACCC
CCATTCCAAGGTACACCAAAGGAGGATCTTCAAAATCCAAAGCCACCCAA
TCGAAAAGTTATTCCTTTCAATTGACTATTTTTTATTACCCTGGAAAAGA
AATCATGGATAAACTTGACGTTGAAGAAGTTCCTGAACAGTCCTTCACTT
CATTAGGATCAGGGGCCTGTATGTTGGAAGAAACCTTAAACGAAAGAGAA
GTGAAAAATGAAATGGTGACATTGATGGCTAGCTTGTCAAAAAAGAAGGA
AGACTTTTTTCAAGACTTGGAAATCACCTACTTACAGAAACAGGGGAATA
GAAAATTTTACAAGACACGATTTTTTAACAAAAAGTTTCAGTTTAATACC
AATGGACTGAAAACGATCGGAGGGAAAGACACGAAGAAAGTGTTTATTGT
GATAAACAAAAATAAACCTTCATCAGTTGCTTCAAATTTTAAAGAGCTGT
TGAAAAGCCATCGAGACAGTAATGCTCCTGAGATTTCTGATTACAGCCAC
AGTGATTCCTCTGACGACGATTTTCAAAAGTCTTCACGAATATTTCCTTC
ATCACCAATGTCTCCCATACAACCATCGAAGAAAAGGAAAAAATCAAATT
TGTTCCCTGACGATATACCCTTAGCTACACCTGTTATGAAATCGGTTATC
AAACATCCAATGAGCATGAAAAACTTATCTCTGTATTAATGATGTTGCGC
CATTTCAATGGATTTTTTAATGCTGTTTGTGAGGCCATCAAGGTCAAAGG
TGAAGATGCCGCAGACATTGAACACTTGTTTGCTCAGGTAAAAGTCTTTC
AATAATCACCATTGGAAATAATATTGACGTTGCCCTCTCTAACTGATTGC
TAAAGCAGCGTCGCGGATCAGAAAAACTATTAATAACGAGAATACCCCCA
TTCCAAGGTACACCAAAGGAGGATCTTCAAAATCCAAAGCCACCCAATCG
AAAAGTTATTCCTTTCAATTGACTATTTTTTATTACCCTGGAAAAGAAAT
CATGGATAAACTTGACGTTGAAGAAGTTCCTGAACAGTCCTTCACTTCAT
TAGGATCAGGGGCCTGTATGTTGGAAGAAACCTTAAACGAAAGAGAAGTG
AAAAATGAAATGGTGACATTGATGGCTAGCTTGTCAAAAAAGAAGGAAGA
CTTTTTTCAAGACTTGGAAATCACCTACTTACAGAAACAGGGGAATAGAA
AATTTTACAAGACACGATTTTTTAACAAAAAGTTTCAGTTTAATACCAAT
GGACTGAAAACGATCGGAGGGAAAGACACGAAGAAAGTGTTTATTGTGAT
AAACAAAAATAAACCTTCATCAGTTGCTTCAAATTTTAAAGAGCTGTTGA
AAAGCCATCGAGACAGTAATGCTCCTGAGATTTCTGATTACAGCCACAGT
GATTCCTCTGACGACGATTTTCAAAAGTCTTCACGAATATTTCCTTCATC
ACCAATGTCTCCCATACAACCATCGAAGAAAAGGAAAAAATCAAATTTGT
TCCCTGACGATATACCCTTAGCTACACCTGTTATGAAATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014034XLOC_014034Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024972-exon-sc0000514-1575043694:166172..166867TCONS_00024972-exon-sc0000514-1575043694:166172..166867Clytia hemisphaericaexon
TCONS_00024972-exon-sc0000514-1575043694:165818..165857TCONS_00024972-exon-sc0000514-1575043694:165818..165857Clytia hemisphaericaexon
TCONS_00024972-exon-sc0000514-1575043694:165021..165182TCONS_00024972-exon-sc0000514-1575043694:165021..165182Clytia hemisphaericaexon
TCONS_00024972-exon-sc0000514-1575043694:164531..164677TCONS_00024972-exon-sc0000514-1575043694:164531..164677Clytia hemisphaericaexon
TCONS_00024972-exon-sc0000514-1575043694:164279..164369TCONS_00024972-exon-sc0000514-1575043694:164279..164369Clytia hemisphaericaexon
TCONS_00024972-exon-sc0000514-1575043694:163637..163983TCONS_00024972-exon-sc0000514-1575043694:163637..163983Clytia hemisphaericaexon
TCONS_00024972-exon-sc0000514-1510915933:166172..166867TCONS_00024972-exon-sc0000514-1510915933:166172..166867Clytia hemisphaericaexon
TCONS_00024972-exon-sc0000514-1510915933:165818..165857TCONS_00024972-exon-sc0000514-1510915933:165818..165857Clytia hemisphaericaexon
TCONS_00024972-exon-sc0000514-1510915933:165021..165182TCONS_00024972-exon-sc0000514-1510915933:165021..165182Clytia hemisphaericaexon
TCONS_00024972-exon-sc0000514-1510915933:164531..164677TCONS_00024972-exon-sc0000514-1510915933:164531..164677Clytia hemisphaericaexon
TCONS_00024972-exon-sc0000514-1510915933:164279..164369TCONS_00024972-exon-sc0000514-1510915933:164279..164369Clytia hemisphaericaexon
TCONS_00024972-exon-sc0000514-1510915933:163637..163983TCONS_00024972-exon-sc0000514-1510915933:163637..163983Clytia hemisphaericaexon
TCONS_00024972-exon-sc0000514-1491911889:166172..166867TCONS_00024972-exon-sc0000514-1491911889:166172..166867Clytia hemisphaericaexon
TCONS_00024972-exon-sc0000514-1491911889:165818..165857TCONS_00024972-exon-sc0000514-1491911889:165818..165857Clytia hemisphaericaexon
TCONS_00024972-exon-sc0000514-1491911889:165021..165182TCONS_00024972-exon-sc0000514-1491911889:165021..165182Clytia hemisphaericaexon
TCONS_00024972-exon-sc0000514-1491911889:164531..164677TCONS_00024972-exon-sc0000514-1491911889:164531..164677Clytia hemisphaericaexon
TCONS_00024972-exon-sc0000514-1491911889:164279..164369TCONS_00024972-exon-sc0000514-1491911889:164279..164369Clytia hemisphaericaexon
TCONS_00024972-exon-sc0000514-1491911889:163637..163983TCONS_00024972-exon-sc0000514-1491911889:163637..163983Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024972-proteinTCONS_00024972-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000514supercontigsc0000514:163637..166867 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.00251	0.923294	0.252243	0.0616951	2.66633	2.73016	1.21728	1.44126	0.539731	0.61041	0.394986	0.890222	0.537095	0.384675	0.45857	0.780597	1.33792	0.557102	0.325628	0.278792	0.64619	0.630377	0.255435	0.348342	0.687669	0.800515	0.34366	0.122255	0.0618172	0.188946
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024972 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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