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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024963 ID=TCONS_00024963|Name=TCONS_00024963|organism=Clytia hemisphaerica|type=transcript|length=910bp
AACCGTAAAAGCAATTGCTGAATTTATTCGAAAAGATTCCGCCACCAACA
CCTTGATTGCCTACACTGCTGCGAATCCTCTATATCCAAATTTATTCCAA
GCTAATGCTCATTATTACTCTGTTACACTCGATTTGGGGAGATCTAACAT
CACTCAAGTTCCAAGAGTCACTGGACTTTGGAAAtcccaaaaagCTACCA
ATGGAGGGTACAGCCAATGGACAAGCTGGTCTGTCTGTAACAGAATATGT
GGACAAGGTCAGCAAACAAGAAGTCGAACATGCACCAATCCTGAACCTTC
CAATGGTGGTACAAATTGTGAGAGTTTGGGACAGTCAAGTCAAATTAAGA
GCTGCAACTTGAAGTCTTGCTtcGAGACAAAAATTCAAGAATGCTCATGG
AGGTCATACGTGGAGCAGAACAGCGGCTTGATCAAAGAAtgttatttcaa
taaaaaacactCCACGACATCTTTATTGGTCTTTGTCAAAACGAGTGTAC
GTATTCATGAAGATCCATGTTCACATTGTTGTGCAAgatattacgtcact
ttcaatgGACACGAATGTTCTCCAGTGCCGATAGACCAAGCAATTTCAAT
GGAGAGCAAAAATAACGATTGGATCCCTTTCACAATTCAAGGCATCTGTA
AACTCACCAATTGGTCTGGTAATATTAAAGTGGGTTTAAACGTTGGACAA
TGCGGTTCAAAAGCGTCTCTCGACCCAGACACAGGCAATGATACTTTCGT
CACCAGCAGTATAATTATAGAAGAGGTCGAAAATGCCAAGTTTATTAACG
TTTAGAATGATGCAAAGTAGCCTAGTTTAGTTGAAAAGGACATtaatatt
ttcccaaaatggGCATATATTTTCCACATCTTATAGTAGTTTAGTATTTT
TGAAGGggaa Run BLAST on NCBI protein sequence of TCONS_00024963-protein >TCONS_00024963-protein ID=TCONS_00024963-protein|Name=TCONS_00024963-protein|organism=Clytia hemisphaerica|type=polypeptide|length=267bp
TVKAIAEFIRKDSATNTLIAYTAANPLYPNLFQANAHYYSVTLDLGRSNI
TQVPRVTGLWKSQKATNGGYSQWTSWSVCNRICGQGQQTRSRTCTNPEPS
NGGTNCESLGQSSQIKSCNLKSCFETKIQECSWRSYVEQNSGLIKECYFN
KKHSTTSLLVFVKTSVRIHEDPCSHCCARYYVTFNGHECSPVPIDQAISM
ESKNNDWIPFTIQGICKLTNWSGNIKVGLNVGQCGSKASLDPDTGNDTFV
TSSIIIEEVENAKFINV Run BLAST on NCBI transcript from alignment at sc0000514:200552..204715+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024963 ID=TCONS_00024963|Name=TCONS_00024963|organism=Clytia hemisphaerica|type=transcript|length=4164bp|location=Sequence derived from alignment at sc0000514:200552..204715+ (Clytia hemisphaerica)
AACCGTAAAAGCAATTGCTGAATTTATTCGAAAAGATTCCGCCACCAACA
CCTTGATTGCCTACACTGCTGCGAATCCTCTATATCCAAATTTATTCCAA
GCTAATGCTCATTATTACTCTGTTACACTCGATTTGGGGAGATCTAACAT
CACTCAAGTTCCAAGAGTCACTGGACTTTGGAAAtcccaaaaaggtaccc
ttaagggcggcacataccgtaccctccatttgcctaagtactcccCGGAT
ATTTTTCCCAGTTTTATCTACTGAAGATCTTATCTTTGTCACAAGCAAAA
ATATCTGCAAAGTTGGAAAAGAAAACCTAAGAATTACAAATTTAGTTAGC
CAAAAATAGTAGAAATTTATTAACTCGCGTTTTTCTACTTGCTTTCTTCC
GGAAATTACAACAGTTgggaaaagtattttttcatcaCCTGTTTTCATAG
TTCGAACTGACCCAAGAGGTAAAATCGCAATTACAGaacaatgttatttt
ttattgaatcaaacagaaaagttaaatttttcgaCATAAAATATTGATCG
AATCATCAGGACCCTTTGAAGAGATCCCAGCTGGCATCGCATACAACGTT
GTCTCAACGTTCATCCAACGTTATATGAATGTTGTGagcgttaaataaac
gttgaaacaatgttgtgtaccagctgggattTTGAGACTACCTGTTAATT
TGTTTGTCTTTGTTAAAATTATTATATCGAGAATTTTATGAATTCAGAAG
GAAAATTCTTTTCGGTATGTGGGTGCCCTAGGAGTTGAGTTTTTTACCCT
TTCAAAGTCAATTTTGTCATTCTAAGAGTCGCCTTTTCAGCACAAATCAG
TCTGTGTAAGAGTAAGGGTTTTTTAATCGAATGTTTACTAAATTTCTGAG
ATTTTACATAAAATTATAATTCATATAAGCATATAATAATCATAGGCTAT
GCCTGGATACTTTGAAAGCAACTTATAGACAAATGTTTCACATGTTATGA
TTATtaaaaggacttttagtgctcTATTCTCTATAATGTAGCTACCAATG
GAGGGTACAGCCAATGGACAAGCTGGTCTGTCTGTAACAGAATATGTGGA
CAAGGTCAGCAAACAAGAAGTCGAACATGCACCAATCCTGAACCTTCCAA
TGGTGGTACAAATTGTGAGAGTTTGGGACAGTCAAGTCAAATTAAGAGCT
GCAACTTGAAGTCTTGCTGTAAGTTTTTTATCCAGCTCTCATAAAGTATC
AATGTTTGCCATATTGAGGCCccctacaatcaaggtcataatatttgaca
aaatagagaaattccccaggaaaatttgaaaccacaatcgatttgtaagt
gctctaaagtaggttcgaagggtacagatataactctgagttttaacgct
agacttgggaccttaggatctgaggatccaaaagctaaaaaatagtccaa
taaggctcagaatatagcctggaagtctgacAACCCCTCCAACATTGAAA
taattcgattaaattaaagagatagcccaaaatcgactttctcgccggaa
ctttaaatcttgaaaagcGTTAatataaccggaattctcaatatattttg
accatgattgtagaacaCCCTTGATTCACGCATTCGCGTAAgtttctttt
tctaaatttacaaaaactgaATTACTAAGTAGATCAGAGAAACTTTCTGG
AAGGTCAGGGGAATTTTACGAAATTTAAGTACACAGTGATGAAACTTTTG
ATTATAATTATCTAATtgtcttttcatttttagtcGAGACAAAAATTCAA
GAATGCTCATGGAGGTCATACGTGGAGCAGAACAGCGGCTTGATCAAAGT
AAAGCATTCCTTATGGTATCACTGACAGCAATCGAATCTTAGTCGTCTCT
AGGAGACAAAGtcgatattttttaaattaaggACATTCCTTCCGACAGCC
TGTTAGTAGAAAAATGCCATTGTACATGCAAAGGCAACACCTTCTTTTCC
CTGGGAAAAGTTGAAGATTCCTTTCTAGTCTTCGGTCGAACGACTTTATA
TCATTGGTACAGGCTAAAGCAAAGGCGTTCGTGACGTCACTCGTACTCGC
GAATTATTTCCCAATACTTTAGCTGTAGTTTAAACGGCCGACATTTAGTC
CTGTcttttctaattgtgaattaaagtgggcaaAAGATTGGCTatctacc
agtggataccccttaaaaccacataccccttaaaacccacaatgttgcat
ttttggctttcataactaccagatttaattttatgtggtatgtattgatt
gaaagtgattttttacaacctcttataaatgttctttcataaaataccaa
attttaaggattttaaagatgctaaagtatcttaaaattcgaagttattc
aaaattttatcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGACaacgtactttcaacacaaaaagtttcagccttacactccaactaaa
caatgagatagagggtaccactttttattgtgggttttaaggggtatcca
ctggtaaggTCAATACCTTGCCTACTTTTGACGTCAGCGCaatttattct
ttcaatcttttccaaaaattttaattgtcaaCTTTTTGTCCACTGTTTGC
CTACACTTGCAACTAGAATAGACCTAGGGTAAAAAGTCggtcgtctaaac
tagagcttatttatattaatattttgttttcactttaCAGGAAtgttatt
tcaataaaaaacactCCACGACATCTTTATTGGTCTTTGTCAAAACGAGT
GTACGTATTCATGAAGATCCATGTTCACATTGTTGTGCAAgatattacgt
cactttcaatgGACACGAATGTTCTCCAGTGCCGATAGACCAAGCAATTT
CAATGGAGAGCAAAAATAACGATTGGATCCCTTTCACAATTCAAGGCATC
TGTAAACTCACCAATTGGTCTGGTAATATTAAAGTGGGTTTAAACGTTGG
ACAATGCGGTTCAAAAGCGTCTCTCGACCCAGACACAGGCAATGATACTT
TCGTCACCAGCAGTATAATTATAGAAGAGGTCGAAAATGCCAAGTTTATT
AACGTTTAGAATGATGCAAAGTAGCCTAGTTTAGTTGAAAAGGACATtaa
tattttcccaaaatggGCATATATTTTCCACATCTTATAGTAGTTTAGTA
TTTTTGAAGGggaa Coding sequence (CDS) from alignment at sc0000514:200552..204715+ >TCONS_00024963 ID=TCONS_00024963|Name=TCONS_00024963|organism=Clytia hemisphaerica|type=CDS|length=3216bp|location=Sequence derived from alignment at sc0000514:200552..204715+ (Clytia hemisphaerica)
ACCGTAAAAGCAATTGCTGAATTTATTCGAAAAGATTCCGCCACCAACAC
CTTGATTGCCTACACTGCTGCGAATCCTCTATATCCAAATTTATTCCAAG
CTAATGCTCATTATTACTCTGTTACACTCGATTTGGGGAGATCTAACATC
ACTCAAGTTCCAAGAGTCACTGGACTTTGGAAAtcccaaaaagCTACCAA
TGGAGGGTACAGCCAATGGACAAGCTGGTCTGTCTGTAACAGAATATGTG
GACAAGGTCAGCAAACAAGAAGTCGAACATGCACCAATCCTGAACCTTCC
AATGGTGGTACAAATTGTGAGAGTTTGGGACAGTCAAGTCAAATTAAGAG
CTGCAACTTGAAGTCTTGCTtcGAGACAAAAATTCAAGAATGCTCATGGA
GGTCATACGTGGAGCAGAACAGCGGCTTGATCAAAGAAtgttatttcaat
aaaaaacactCCACGACATCTTTATTGGTCTTTGTCAAAACGAGTGTACG
TATTCATGAAGATCCATGTTCACATTGTTGTGCAAgatattacgtcactt
tcaatgGACACGAATGTTCTCCAGTGCCGATAGACCAAGCAATTTCAATG
GAGAGCAAAAATAACGATTGGATCCCTTTCACAATTCAAGGCATCTGTAA
ACTCACCAATTGGTCTGGTAATATTAAAGTGGGTTTAAACGTTGGACAAT
GCGGTTCAAAAGCGTCTCTCGACCCAGACACAGGCAATGATACTTTCGTC
ACCAGCAGTATAATTATAGAAGAGGTCGAAAATGCCAAGTTTATTAACGT
TTAGACCGTAAAAGCAATTGCTGAATTTATTCGAAAAGATTCCGCCACCA
ACACCTTGATTGCCTACACTGCTGCGAATCCTCTATATCCAAATTTATTC
CAAGCTAATGCTCATTATTACTCTGTTACACTCGATTTGGGGAGATCTAA
CATCACTCAAGTTCCAAGAGTCACTGGACTTTGGAAAtcccaaaaagCTA
CCAATGGAGGGTACAGCCAATGGACAAGCTGGTCTGTCTGTAACAGAATA
TGTGGACAAGGTCAGCAAACAAGAAGTCGAACATGCACCAATCCTGAACC
TTCCAATGGTGGTACAAATTGTGAGAGTTTGGGACAGTCAAGTCAAATTA
AGAGCTGCAACTTGAAGTCTTGCTtcGAGACAAAAATTCAAGAATGCTCA
TGGAGGTCATACGTGGAGCAGAACAGCGGCTTGATCAAAGAAtgttattt
caataaaaaacactCCACGACATCTTTATTGGTCTTTGTCAAAACGAGTG
TACGTATTCATGAAGATCCATGTTCACATTGTTGTGCAAgatattacgtc
actttcaatgGACACGAATGTTCTCCAGTGCCGATAGACCAAGCAATTTC
AATGGAGAGCAAAAATAACGATTGGATCCCTTTCACAATTCAAGGCATCT
GTAAACTCACCAATTGGTCTGGTAATATTAAAGTGGGTTTAAACGTTGGA
CAATGCGGTTCAAAAGCGTCTCTCGACCCAGACACAGGCAATGATACTTT
CGTCACCAGCAGTATAATTATAGAAGAGGTCGAAAATGCCAAGTTTATTA
ACGTTTAGACCGTAAAAGCAATTGCTGAATTTATTCGAAAAGATTCCGCC
ACCAACACCTTGATTGCCTACACTGCTGCGAATCCTCTATATCCAAATTT
ATTCCAAGCTAATGCTCATTATTACTCTGTTACACTCGATTTGGGGAGAT
CTAACATCACTCAAGTTCCAAGAGTCACTGGACTTTGGAAAtcccaaaaa
gCTACCAATGGAGGGTACAGCCAATGGACAAGCTGGTCTGTCTGTAACAG
AATATGTGGACAAGGTCAGCAAACAAGAAGTCGAACATGCACCAATCCTG
AACCTTCCAATGGTGGTACAAATTGTGAGAGTTTGGGACAGTCAAGTCAA
ATTAAGAGCTGCAACTTGAAGTCTTGCTtcGAGACAAAAATTCAAGAATG
CTCATGGAGGTCATACGTGGAGCAGAACAGCGGCTTGATCAAAGAAtgtt
atttcaataaaaaacactCCACGACATCTTTATTGGTCTTTGTCAAAACG
AGTGTACGTATTCATGAAGATCCATGTTCACATTGTTGTGCAAgatatta
cgtcactttcaatgGACACGAATGTTCTCCAGTGCCGATAGACCAAGCAA
TTTCAATGGAGAGCAAAAATAACGATTGGATCCCTTTCACAATTCAAGGC
ATCTGTAAACTCACCAATTGGTCTGGTAATATTAAAGTGGGTTTAAACGT
TGGACAATGCGGTTCAAAAGCGTCTCTCGACCCAGACACAGGCAATGATA
CTTTCGTCACCAGCAGTATAATTATAGAAGAGGTCGAAAATGCCAAGTTT
ATTAACGTTTAGACCGTAAAAGCAATTGCTGAATTTATTCGAAAAGATTC
CGCCACCAACACCTTGATTGCCTACACTGCTGCGAATCCTCTATATCCAA
ATTTATTCCAAGCTAATGCTCATTATTACTCTGTTACACTCGATTTGGGG
AGATCTAACATCACTCAAGTTCCAAGAGTCACTGGACTTTGGAAAtccca
aaaagCTACCAATGGAGGGTACAGCCAATGGACAAGCTGGTCTGTCTGTA
ACAGAATATGTGGACAAGGTCAGCAAACAAGAAGTCGAACATGCACCAAT
CCTGAACCTTCCAATGGTGGTACAAATTGTGAGAGTTTGGGACAGTCAAG
TCAAATTAAGAGCTGCAACTTGAAGTCTTGCTtcGAGACAAAAATTCAAG
AATGCTCATGGAGGTCATACGTGGAGCAGAACAGCGGCTTGATCAAAGAA
tgttatttcaataaaaaacactCCACGACATCTTTATTGGTCTTTGTCAA
AACGAGTGTACGTATTCATGAAGATCCATGTTCACATTGTTGTGCAAgat
attacgtcactttcaatgGACACGAATGTTCTCCAGTGCCGATAGACCAA
GCAATTTCAATGGAGAGCAAAAATAACGATTGGATCCCTTTCACAATTCA
AGGCATCTGTAAACTCACCAATTGGTCTGGTAATATTAAAGTGGGTTTAA
ACGTTGGACAATGCGGTTCAAAAGCGTCTCTCGACCCAGACACAGGCAAT
GATACTTTCGTCACCAGCAGTATAATTATAGAAGAGGTCGAAAATGCCAA
GTTTATTAACGTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024963-exon-sc0000514-1491911889:200552..200745 | TCONS_00024963-exon-sc0000514-1491911889:200552..200745 | Clytia hemisphaerica | exon |
| TCONS_00024963-exon-sc0000514-1510915933:200552..200745 | TCONS_00024963-exon-sc0000514-1510915933:200552..200745 | Clytia hemisphaerica | exon |
| TCONS_00024963-exon-sc0000514-1575043694:200552..200745 | TCONS_00024963-exon-sc0000514-1575043694:200552..200745 | Clytia hemisphaerica | exon |
| TCONS_00024963-exon-sc0000514-1491911889:201593..201769 | TCONS_00024963-exon-sc0000514-1491911889:201593..201769 | Clytia hemisphaerica | exon |
| TCONS_00024963-exon-sc0000514-1510915933:201593..201769 | TCONS_00024963-exon-sc0000514-1510915933:201593..201769 | Clytia hemisphaerica | exon |
| TCONS_00024963-exon-sc0000514-1575043694:201593..201769 | TCONS_00024963-exon-sc0000514-1575043694:201593..201769 | Clytia hemisphaerica | exon |
| TCONS_00024963-exon-sc0000514-1491911889:202335..202399 | TCONS_00024963-exon-sc0000514-1491911889:202335..202399 | Clytia hemisphaerica | exon |
| TCONS_00024963-exon-sc0000514-1510915933:202335..202399 | TCONS_00024963-exon-sc0000514-1510915933:202335..202399 | Clytia hemisphaerica | exon |
| TCONS_00024963-exon-sc0000514-1575043694:202335..202399 | TCONS_00024963-exon-sc0000514-1575043694:202335..202399 | Clytia hemisphaerica | exon |
| TCONS_00024963-exon-sc0000514-1491911889:204242..204715 | TCONS_00024963-exon-sc0000514-1491911889:204242..204715 | Clytia hemisphaerica | exon |
| TCONS_00024963-exon-sc0000514-1510915933:204242..204715 | TCONS_00024963-exon-sc0000514-1510915933:204242..204715 | Clytia hemisphaerica | exon |
| TCONS_00024963-exon-sc0000514-1575043694:204242..204715 | TCONS_00024963-exon-sc0000514-1575043694:204242..204715 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000514 | supercontig | sc0000514:200552..204715 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000884 | TSP1_rpt |
Blast
The following BLAST results are available for this feature:
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