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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024958 ID=TCONS_00024958|Name=TCONS_00024958|organism=Clytia hemisphaerica|type=transcript|length=763bp
AATTTATGTGTGGTGTGATTGGaagacttttgaaaatgATGAAGAACAAA
TCAAGTGTGCCCCTGGCATTAACCGCTCGCTTCTCAAGTTTGGATGAACG
GAAATATTATTCTTGCGAGGAAGGGAATGGATGTCCTGTGTTGAAAACAT
GTCCGGGTAATCAGCTTTATTGGCCACAGAAAGAAATTTGCTACCAACCA
GATGAGGATGAAACACAGGGTGACCAAGACGAACGCGTGAGAAGAGCAAA
CAGTCCACCAGCTAAAAATAAAGGACGCAAAGCTACTATTATAAAACGAA
AACTCCTCCGCTCTGATGTATCCTTGGGTGAATTTTACGATGCCAAGAAT
GATCAATTTTTATCAGCCGTCTCTTTATGGTCTATGGAAGAATtgcaaaa
acatcgaaaaagaAGATTTGctcatccatcaacaaattgcCAATTTGATT
CTGGCAAAACGGAGGATAGTCGAATGAGCCTCATGGATATCGATGCTTCA
TTGAAACTAAGCTTTATGGATTATACCGCTCAGCCTCCAGATTACGTCAA
TGCTGTTCCTGTTGAAGTCGAGTTAACTCCCATTCAAGATTTATGTGATG
CCACAGATACTATTTTAGTAGTATAGGAGACAGCTTGACACAAAAAACAG
CCGAAATGCTCAGCCACTTCAACGTCCTTAGTATGGAGATAAATACCTTG
TTGAACTCTGGACCTGCTTTTGAATACCCTGTCATTcgagaaaatttaaa
cttttataAAATT Run BLAST on NCBI transcript from alignment at sc0000514:195018..199214+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024958 ID=TCONS_00024958|Name=TCONS_00024958|organism=Clytia hemisphaerica|type=transcript|length=4197bp|location=Sequence derived from alignment at sc0000514:195018..199214+ (Clytia hemisphaerica)
AATTTATGTGTGGTGTGATTGGaagacttttgaaaatggtaagaataatt
ttttttaaattcctttatgatttcaaaatttgtataCATATTAGGGACCA
AATCTTAAATCTGTTCCCCTAGAGCCCTAGAGGTAATTCTAGTTAAGcag
tttcattattttattcTTGTTTAATAAGTGTTATTGATTGTTTGCCAACN
TCAgatttgtttgttgtttgtaaAATACGTAAGACatatttgtatatttt
tcgTCCTTGCTTCAATTGAAATCAGGGTTACAAAAACCGAAGTTTTTTTG
TCGTTCtctcttttccttttttcaggacAACCGATGGTAACTGGGTGTAG
CTGACAGAAAACAACGTGACGATCTTAGAACAGATAACGCCAAAAAAGCA
TCCAAGCTACCATAAGTTACCCACATTCAAAGCAGGTAAAAACTACTTTT
GCCATGCACTTTCGAATCTTTGGTGTATTTTTATCTGGTTAATTTTACTT
TGTTTATAGAATTCCCGCTTATCTCTATCGTATTAGCTTTAGTGGCTCTC
GTTTCTACTCATATGTCAATCCAGGTTCCAAAACAAGTAAATTTTAATAT
gctcattttgattgtttttcagATTGACGAGGCTAAAGAGATGAAAGCTT
TTTGCAACTATCAATTGAccgattttaaaaattattgttGATGACGTGGA
GTAGAGCTGCCAAATATTAAATCAATTTATACTAAAATCATGTAGCATTT
cagtcagttacatcaaaattaaagtgaaagATACAAATACAGAATACAAC
AGAAATTCATAGTATTAATTGAATTGACCTGGAACTAAAATGAGCAGCTA
CTGTTGTTTCGACAACAATAAGACAAATAAGCattgtagaaaaaaatttt
ttaccgaagaaaatttcgaaaagaaaaatgcaCTACTGTACTCGCTTGAA
GAAAAGCCTTCTTGTATTCTTGCTCCGCAGAAGAGAAAAATTCTCTTGAG
AGAAGTTTACAATTCTTCttagaagaaaattattttcaccaGTGAAGAAA
ATGATTCTTACTttgagtttatttttcttatgattTAAGAGTTTTTTCTT
AAGATTGTTTTTCTTGATCAATGATATTTTTCTTGCTCCGCGGAAGAGAA
ANTTAAgattgtttttcttgttttcttgatCGATAATATTTTTCTTGCTC
CGCGGAGGAGAAATATATTCTTCTCTGaggttttttttacttgatagaag
aaaattattttcaccaGTGATTTTGTTGACTTCTGTAGTGTAAAGGTAAA
AACTAAAAGGTCATACTAAACTTCACATCATTACAAAATGGTGCTTGATG
TCtcctctgcttgatgctcagcagtTAGAGAAAAATCGAAGTAAGTCGAG
CAATTGCAGGGAGAAAGTGGCTCTCGACCCTACCTTgagtagatagctat
cgaaagaggaatTTTTAGTTCGCCTCCGcaacctttttctaattttttcc
ttcctttctaatcaatgttaatttttgtttattctaTAACAAGCCAATAT
TTAAACAGTTCTTTCTTCTTTAGATGAAGAACAAATCAAGTGTGCCCCTG
GCATTAACCGCTCGCTTCTCAAGTTTGGATGAACGGAAATATTATTCTTG
CGAGGAAGGGAATGGATGTCCTGTGTTGAAAACATGTCCGGGTAATCAGC
TTTATTGGCCACAGAAAGAAATTTGCTACCAACCAGATGAGGATGAAACA
CAGGGTGACCAAGACGAACGCGTGAGAAGAGCAAACAGTCCACCAGCTAA
AAATAAAGGACGCAAAGCTACTATTATAAAACGAAAACTCCTCCGCTCTG
ATGTATCCTTGGGTGAATTTTACGATGCCAAGAATGATCAATTTTTATCA
GCCGTCTCTTTATGGTCTATGGAAGAATtgcaaaaacatcgaaaaagaAG
ATTTGctcatccatcaacaaattgcCAATTTGATTCTGGCAAAACGGAGG
ATAGTCGAATGAGCCTCATGGATATCGATGCTTCATTGAAACTAAGCTTT
ATGGGTAAGATTTGTTGTTACTAAATgcagatgggccttaaatttcaaaa
caaaggctgaataaagtctgaaccaggctctatccgatctgtcaattaaa
acaaacttatcaagaacaaaaacattgcttacaaaaacgaaagtggtgac
acacagcaTACAGAGCTATAGGATTTGGTTCAATATTGAGGTTATTCAAG
GGGGTAGAATTAATaatagagaatttttttcatcagACTTCACTGacatt
ttctacaaaaatagaacaattttggttattataatatttttcaggaagtc
tTATCGAAGTGTCCGGTAGTGCTCAGTATGTCAGAAAATCCCATGTGCTG
ACAACGGACGAAACATTCACACTGGCCTACAAATCCACTTCATTTTACAA
TGTTTTACCGGTCACAGCGGTAAAGAATTTCCCCAAACAATGCGATAACA
AGCAAGCAACACACGTCATTAGCAAAGTCGTTTACGGTCAAAACGCCTAC
TACTTTTTTAAACGATCAGTAAgcagaaaagaaaacaaagaaaaaattgc
tGTAGCTTACAAGTCTTGGTCAAATCAATTCCGTCTTTTTCTATTGAGGG
AAGTGCAACAGTCAAAGAAGGTGGAAAAGAAAAGTTTCAGAGAATCTGTG
CAAGTGCGGTGTAATGGAGATTTCAAACTACCTGGTGGCTTTCCACAATC
tccctcgaaatatattgagattttagtgtattttaacgtttttcagaatt
tcaagttcgggcgagaattgctattttagcacttccactttcttccattg
aatgtttcgatttttaaggggtttggtggcttctaggctatattccaagc
ctcattcgagcaaatttgagcttttaaatcctgagatcttaagctcctaa
gtcttaagtctcatgttaaaactcagagttaaaactctactttccaactg
tacgcgcctaaaaatcaattgtggtgttcaaaattacaccgggaactccc
ctttgtctcaaatatttcttgaaggattgcaGCTACATTCGAAGAAGCTG
TCAAGAGCTTTAAAAAACTACAAggtatattttttgttgaaGGACATAAA
CCTTAAAGGGAAAATTCTAGCCACAACTTAATTAGGTGAAGACAATGATT
CGTAAACAAATTTATATCTTATGTGTTATgataactaattttggcaaaag
gCAGACTAAATTGACTATTTTTTgcctaaaataaatttttatatacTAGT
agacaaaaaaaagtgaattgtCGTGATGTGAATTGTCATGAGACAGATCT
CATTATATACGAGgtatcttttttttaatctattCGGAAAATGATTTTGG
CAAATTATCCGCAAAAATAATTTCGCTTAAGGTATTTTGAAGCTTCgcta
aggcgagaccaatttaatttgttgttctacaggcccaaccgaccctattt
ttgctaaaatcagaaaaataataatattgaatttccactacaatatattt
ttcacagtactcaaatttgaataaagctgaaaattaattcacaaaattga
aaaatttagaaaaccaAGCATCGTcatcgaaaataaaaaaagtgaaattt
tgatccagatattttttgaaaaacattctcGTTACTTTACCAatcctgat
aaatgaaaaatttattcttattttaccgaccgaccgacccatattttgct
aatgctctgcccgtagaacaacaaattgaTTTGGTCTCGCCTAAGACTTA
AAAAATAAGCAATTTAAAAGGAGAGAGGGTATATAGCCATTGAGTGTCGT
CGACATCATTcataactgttatgaaattcaaaatatttcctttcACTTTT
CCACGTGGGAGATTAAATATAACCAGAGACCATTTTTCTCTTCAATTTTT
CAGATTATACCGCTCAGCCTCCAGATTACGTCAATGCTGTTCCTGTTGAA
GTCGAGTTAACTCCCATTCAAGATTTATGTGATGCCACAGATACTATTTT
AGTAGTATAGGAGACAGCTTGACACAAAAAACAGCCGAAATGCTCAGCCA
CTTCAACGTCCTTAGTATGGAGATAAATACCTTGTTGAACTCTGGACCTG
CTTTTGAATACCCTGTCATTcgagaaaatttaaacttttataAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024958-exon-sc0000514-1491911889:195018..195055 | TCONS_00024958-exon-sc0000514-1491911889:195018..195055 | Clytia hemisphaerica | exon |
| TCONS_00024958-exon-sc0000514-1510915933:195018..195055 | TCONS_00024958-exon-sc0000514-1510915933:195018..195055 | Clytia hemisphaerica | exon |
| TCONS_00024958-exon-sc0000514-1575043694:195018..195055 | TCONS_00024958-exon-sc0000514-1575043694:195018..195055 | Clytia hemisphaerica | exon |
| TCONS_00024958-exon-sc0000514-1491911889:196591..197071 | TCONS_00024958-exon-sc0000514-1491911889:196591..197071 | Clytia hemisphaerica | exon |
| TCONS_00024958-exon-sc0000514-1510915933:196591..197071 | TCONS_00024958-exon-sc0000514-1510915933:196591..197071 | Clytia hemisphaerica | exon |
| TCONS_00024958-exon-sc0000514-1575043694:196591..197071 | TCONS_00024958-exon-sc0000514-1575043694:196591..197071 | Clytia hemisphaerica | exon |
| TCONS_00024958-exon-sc0000514-1491911889:198971..199214 | TCONS_00024958-exon-sc0000514-1491911889:198971..199214 | Clytia hemisphaerica | exon |
| TCONS_00024958-exon-sc0000514-1510915933:198971..199214 | TCONS_00024958-exon-sc0000514-1510915933:198971..199214 | Clytia hemisphaerica | exon |
| TCONS_00024958-exon-sc0000514-1575043694:198971..199214 | TCONS_00024958-exon-sc0000514-1575043694:198971..199214 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000514 | supercontig | sc0000514:195018..199214 + |
Blast
The following BLAST results are available for this feature:
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