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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024951 ID=TCONS_00024951|Name=TCONS_00024951|organism=Clytia hemisphaerica|type=transcript|length=4722bpRun BLAST on NCBI protein sequence of TCONS_00024951-protein >TCONS_00024951-protein ID=TCONS_00024951-protein|Name=TCONS_00024951-protein|organism=Clytia hemisphaerica|type=polypeptide|length=898bp MAEQSKPTRPSRDLDHYDENVEELLKEHKYLYKKEAKYDIMQVLHAFQDLRun BLAST on NCBI transcript from alignment at sc0000514:63890..102577+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024951 ID=TCONS_00024951|Name=TCONS_00024951|organism=Clytia hemisphaerica|type=transcript|length=38688bp|location=Sequence derived from alignment at sc0000514:63890..102577+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000514:63890..102577+ >TCONS_00024951 ID=TCONS_00024951|Name=TCONS_00024951|organism=Clytia hemisphaerica|type=CDS|length=2697bp|location=Sequence derived from alignment at sc0000514:63890..102577+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00024951 vs. Swiss-Prot (Human)
Match: PUR8 (Adenylosuccinate lyase OS=Homo sapiens GN=ADSL PE=1 SV=2) HSP 1 Score: 639.802 bits (1649), Expect = 0.000e+0 Identity = 310/470 (65.96%), Postives = 374/470 (79.57%), Query Frame = 3
Query: 114 YRSQLSERYASKEMSYNFSDNRKFSTWRELWVILAKAEMELGAPITQEQIDEMEANIHNIDYVMASAKEREVRHDVMAHVHTFGHVAPKAAPIIHLGCTSCYVGDNADLIILRDGMDILLPKLARCIDRLSKFADQYKDLPTLGFTHYQPAQLTTVGKRACLWISDLVADLQNIERLRKELRFRGAKGTTGTQASFLDLFNGDHEKVEKLDELVTKMAGFEKRFMVTGQTYPRKVDYNVLAGLSGLGATIHKICTDIRLLASMXXXXXXXXXXQIGSSAMAYKRNPMRSERCCGLARHLMTLLSDAQQTAAVQWFERTLDDSANRRLCLSESFLTADAILMTLQNITEGLVVYPNVIAKHINDELPFMATENIINALVKEGGDRQEAHEEIRRLSRDAAREVKEFGRANNLLSLIQGSAYFKPISERIHEVLDAKTFIGRCPEQVTTFIEAEVKPSLVPYKDMLDERVEL 1523
YRS L+ RYAS EM + FSD KF TWR+LW+ LA+AE LG PIT EQI EM++N+ NID+ MA+ +E+ +RHDVMAHVHTFGH PKAA IIHLG TSCYVGDN DLIILR+ +D+LLPKLAR I RL+ FA + LPTLGFTH+QPAQLTTVGKR CLWI DL DLQN++R+R +LRFRG KGTTGTQASFL LF GD KVE+LD++VT+ AGF++ F++TGQTY RKVD VL+ L+ LGA++HKICTDIRLLA++KE+EEP E++QIGSSAM YKRNPMRSERCC LARHLMTL+ D QTA+VQWFERTLDDSANRR+CL+E+FLTAD IL TLQNI+EGLVVYP VI + I ELPFMATENII A+VK GG RQ+ HE+IR LS+ AA VK+ G N+L+ IQ AYF PI ++ +LD +F GR +QV F+E EV P L PY+ ++ + EL
Sbjct: 13 YRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMKSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGATSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTGRASQQVQRFLEEEVYPLLKPYESVMKVKAEL 482 The following BLAST results are available for this feature:
BLAST of TCONS_00024951 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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