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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024946 ID=TCONS_00024946|Name=TCONS_00024946|organism=Clytia hemisphaerica|type=transcript|length=4224bpRun BLAST on NCBI transcript from alignment at sc0000514:33260..63463+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024946 ID=TCONS_00024946|Name=TCONS_00024946|organism=Clytia hemisphaerica|type=transcript|length=30204bp|location=Sequence derived from alignment at sc0000514:33260..63463+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00024946 vs. Swiss-Prot (Human)
Match: GABR2 (Gamma-aminobutyric acid type B receptor subunit 2 OS=Homo sapiens GN=GABBR2 PE=1 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 3.243e-41 Identity = 164/694 (23.63%), Postives = 305/694 (43.95%), Query Frame = 3
Query: 495 SAELAIEEINKDPLYFPKY-QVVLDTSGNSTNKDLHNFASHILL--NHLEKKPPPVFFLGPENNLLAKTVASV--SGLKSKNILQFSVGTDDLYLSHERHVYPNFYRVNPSRYHYNRARVEIVKHYKWLNVALIYSSDAYHFQMNALLRQMLISNNINVVYEEAFHTDPTTTINSIKENGVKVILGSYSAVYASQVFCQIYCLEMFSPRYVWLMTDSFTPS---------ATSVCSADKVACAMRHHFFLSTKELPDNGLPRIA---VQKNQTSFDNTFKDLMVPLIYHQPNNNTLAKYTYDAVWTMFDILKRAKPTL--ETLKVNLDRIFYGD-TPARNLLSALVKTTDFNGITGRIRFDATGNRYNDVNISQSLIGNNLDGVGVFETEHSVLRL--GSVHWLGWRPHRDMATI-KTYRLLSYSLHLAMFILAWIGVAIALVFLIYVLVRRKREYVRNTYWQINLMVIFGSVFVYASLIFFVTEPESNIFGASGNDICLLRTVLFCLGLAFIIGALFSKLYLAYRVLRKNWFILIDKSRKRMFLWWFLVVLFTGL------ILLVWLLISPFVMTEKVIEKRE-EIHCTMMTIDFDPFIE--EYIYINICKGFSYPFAFAIVWFAALLVTATYLFYKTRHLFISNLSDVWHCGLCVLTIDFFIVAGLICAFLLADYPDLFGQVVGTLLWLCVT 2480
+ ELAIE+I + L P + + L + K L F I NHL + F G + +V S+ L+ N++Q S L+ ++ YP F+R PS N A ++++KHY+W V + ++ L +L +I + E+F DP T++ +K N V++ILG + A++VFC Y M+ +Y W++ + PS +S C + AM + + + L + I+ Q+ + ++N + + P +H Y YD +W + L+RA TL + + Y D T R +L+A+ T+F G+TG++ F G R + +Q + VG + L + ++ + G P +D I + R +S L+ + L +G+ +A FL + + R ++ ++ + +N ++I G + YAS+ F + S + + +C +RT + +G GA+F+K + + + + K +K++ L+V+ G+ IL+ W + P + +EK E I P +E E ++ I G Y + ++ F +L ++TR++ I L+D + G+ V + + G +FL D P++ +V ++ C T
Sbjct: 80 AVELAIEQIRNESLLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHL------MVFGG-----VCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKK-YPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRFSEVRNDLTGVLYGEDIEISDTESFSNDPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNK-RSGVGPSKFH--------GYAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILNAM-NETNFFGVTGQVVF-RNGERMGTIKFTQFQDSREVK-VGEYNAVADTLEIINDTIRFQGSEPPKDKTIILEQLRKISLPLYSILSALTILGMIMASAFLFFNIKNRNQKLIKMSSPYMNNLIILGGMLSYASIFLFGLD-GSFVSEKTFETLCTVRTWILTVGYTTAFGAMFAKTWRVHAIFKNV------KMKKKIIKDQKLLVIVGGMLLIDLCILICWQAVDPL---RRTVEKYSMEPDPAGRDISIRPLLEHCENTHMTIWLGIVYAYKGLLMLFGC------FLAWETRNVSIPALNDSKYIGMSVYNVGIMCIIGAAVSFLTRDQPNVQFCIVALVIIFCST 733 The following BLAST results are available for this feature:
BLAST of TCONS_00024946 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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