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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024943 ID=TCONS_00024943|Name=TCONS_00024943|organism=Clytia hemisphaerica|type=transcript|length=2510bp
CATTCAATTAAATTGATGTTgtgtttctttttgtttagatAGTCAACAAA
ATTATAATACAAAATGGAAGAAAAACTATTAGATGGTAAATTCTACTTGT
TCCCTTCATGTACCAAAATACATGAGGTCATTGTAACTCGTCAAAACCTA
ATGTATCGGGAACAGGTCATTACCAAGCAAGGAGTCCCACCCAAACCTTT
TATTTCCATATTAATGGAAAATATCATTGGTTGTAAAATATTTGAGAGTA
AAATGAAGAAAGATAGTTATTGTTGTTTGATGGTCAACATGTTGATGAAG
AACAAGAAAGGCATGAGAGAAAGGAAACACGTGACCTTTTGTATTTTCCA
ATCAGATGATAAACAAGAGAATATGACTATTACTGAAACATGGGCTAGAA
CGTTGTCGTGGCTGGCTCGCGATCCAACACTGAATGTAGAAGAGTTACAA
GAAAAGGAAGATTTTCCAGAGCAAAGAAAGTATTTCATTTTGATCAATCC
GAAGAGTGGTAAAGGCAAAAGCTTGGAGCTTTTCAATAGTACCATTGAGC
CAATATTGAAAGATGCCATGATTAAATATGAGGCTTTTATTACAGAATAC
AGTGGACACGTTATGAAATTGGCCAAAGATTTCGATCATAAGAATACATC
AATGGTATTATGAAGAGAGCAGATTGGGAAGATTGTTTACAAACACCAAT
AGGGATGGTACCAACTGGTTCAGGGAATGCTCTATCAGCTTCCATCAATT
ATGCTGCAGAtgaaaattttggCATAGTGAACGCAATGTACGTCTTACTG
AAAGGTAAATCACACCCAATGGACCTGTTTTCTTGCCACAACTCTAAAGG
AACTGTCTACGGATTTTTAAGTTTAACTTGGGGCCTGTTATCCGACGTCG
ATATTGAATCAGAGAAGTACCGTTTTTTGGGACCGTTACGTTTTCTACTT
GTCGGCGTACAACGGATTTTGTCGTTACGTCATTATCACGGGACGTTCTA
TTACTTGCCGGCGCTGGATGACGAGAATCGAGACGTCGGGATCGAACAAG
ACGGAAGCAATACGCAACCAGTGATTGATGATGTGGACGGAGATTCGTCG
CCGACGGCTCCGGAGGATATAGAACTCGTACCCAAACCTTTAGATTGTGG
ACCCAAGTGTACCATACCTGCTTTGAATGAAGAATGTGGGACTGAAAATt
ggaagaaaattgaaaacgaGTTTATTTTGCTAGGTTTACAGTCTATATCT
CATTTAGGCTCGGATATGCATTCAGCACCCGGCGTTCATTTCAGCGACGG
CTATTTAGATTTGCAATACGTCAGCCGCGGTACGACCAAGAAACGTATGT
TAGACTTACTAGATGCATTTGAAACTGGAAAACATTTGGAGTATGATGAT
GTAGAACAGATTAAGATAAAAGCGTTCCGGCTTGTTCCGGGTGATGACCG
TACCGGACATATAGCAGTCGACGGAGAGGAGGTCGATTATGAACCAATCC
AAGGTGAAGTTTTACCTTCACTGGCGAATGCCATCATGttaatgaaaatt
taaacaACCCCTGTATGTATGTGCTAGCTGTTAacttgtctattatgttt
acaGTTTGATTTTCTGCTTGGTGTGCTCCCTCATTTTTAACCGTCTTCTA
TATCAGTTTATTGACTTATTTTGGCCGAAATGGAATAACTCCCTGTAAAC
TTCAAGACACACGTGTTTGACTAGATTTCGTGTCGACGTTAGTCCAAATT
CTATGCAAAGCTGAAGTCTTTTAACAATCTTTGAAGTAAGTAAAGTATTC
CGGAAAAATATTTACCATGGTATTTCACGATAATGTAATGGGAGTTTTCC
TGAAGAATAAAGATAATTATATCGatatcaaaaacaaagcaaatatGGGC
AGAGTAGAGATAATGGAATATATTATTATTCATCTGAAGGGTACATGAAG
GCCTTCGTATACTtatactatactatactatactTCGATGCTTTTTCTAG
CTGTATACTTCTAAGagaaatttgtcaaatgaaCACTCAATTTATCATTT
TAGGGCAATAGTAGTATTTGGGTGGTAGACAGTCAAAACACAACGCATTT
TTCGAAACTAGAAGATTACGAAAACCAATGGTGATCAATATAGTTTAACT
TTGGGAGGGGTACTTTAAAAAAGGTTGCATTGCAGGCCTTCAACATAATA
GTCCTAAAGAAGACCTGATTAATTTTGCCTGCGGTGTCAATATAGGGGAT
AgcttttagttcaatttttcaataaattcaatttattatttttacagACC
TTCttgaattttagttttgatcttttttttatgagtataaatatttttct
gttttttaagattttttttgcattagATTTTCACTGCTATAATACTCTGT
ATATTTATCATTATCTCAATATTAGAGTTATGAGGTCCTTACGGTCATAA
TAGATAATTGGTTATTATTCATATTATGCCCATTATGATAGAAAAATTAT
ATAATATGAT Run BLAST on NCBI transcript from alignment at sc0000514:25924..32199+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024943 ID=TCONS_00024943|Name=TCONS_00024943|organism=Clytia hemisphaerica|type=transcript|length=6276bp|location=Sequence derived from alignment at sc0000514:25924..32199+ (Clytia hemisphaerica)
CATTCAATTAAATTGATGTTgtgtttctttttgtttagatAGTCAACAAA
ATTATAATACAAAATGGAAGAAAAACTATTAGATGGTAAATTCTACTTGT
TCCCTTCATGTACCAAAATACATGAGGTCATTGTAACTCGTCAAAACCTA
ATGTATCGGGAACAGGTCATTACCAAGCAAGGAGTCCCACCCAAACCTTT
TATTTCCATATTAATGGAAAATATCATTGGTTGTAAAATATTTGAGAGTA
AAATGAAGAAAGATAGTTATTGTTGTTTGATGGTCAACATGTTGATGAAG
AACAAGAAAGGCATGAGAGAAAGGAAACACGTGACCTTTTGTATTTTCCA
ATCAGATGATAAACAAGAGAATATGACTATTACTGAAACATGGGCTAGAA
CGTTGTCGTGGCTGGCTCGCGATCCAACACTGAATGTAGAAGAGTTACAA
GGTTTGTATTCTTGTTTGTAGACTATTCAAATCTTCAATTGATTCCTTTT
TACCTACCTTTTTCAATAAATAAATTCGATATTCAtcccaaaaattaata
tctCTATTCAAAGACATCTGGGTTCAAGCAAAGGGCGTacatattatttt
ttctcaatattttggggGCGTTTACCAGTTCGAAAGGATAGAACTTCTTT
AAGGAGGCCAAGCTACTGCTAGTAATAATCGCTATTTAGAGGGCAGTGCT
CATTGAAGGCTAAAATAAAGTAAATACTGAAATtgcaatttcttttcaaa
atctttatttcAGAAAAGGAATTGCAATTTCAGTATTTACTTTATTTAGA
GGGCAGTGCTCATTGAAGGCTAAAATAAAGTAAATACTGAAATtgcaatt
tcttttcaaaatctttatttcAGAAAAGGAAGATTTTCCAGAGCAAAGAA
AGTATTTCATTTTGATCAATCCGAAGAGTGGTAAAGGCAAAAGCTTGGAG
CTTTTCAATAGTACCATTGAGCCAATATTGAAAGATGCCATGATTAAATA
TGAGGCTTTTATTACAGGTAGATTGCTTCAATTCTTGTAAGATTTTCTTT
TGCAGGAAGAAATTTTATAGTAGACAagttaatattttttgaaacttgga
atgtctttgtttttattagtGAACCTTTATTTCTGAGcaaatgtattttc
tttttcttttccccCAGTTTACAACTTTGGTGAGTAATAGAAATcctaaa
aaatcaagttaagcGAGAAGGAATTATTACCAATGGTTAGGACTAGGATG
AATTAGCTTTTTGGCTAAAGATTCACATTGGAAGGGTATATACCCTTTAA
GCTTTCAGCAAGCATCCATCtgatttattttattataaaaGGCTTATTAA
GGGATGTGCGCTGGCTTGACTCTCCTCCTTTTACTTACAGAATACAGTGG
ACACGTTATGAAATTGGCCAAAGATTTCGATCATAAGAAGTATGATGCAA
TTATTATTTGTTCAGGAGACGGACTTGCGTATGAGGTACCTTCATagttt
gccccccccccccactttttttggggggcctttgtagggggggggTACCA
AGATTTGCCAGAGACACCCCTGTAATTACATTAGTTTGTAAAACATTTTT
GTCTGGATAACAGTGCGTATAAATATTTCGAAGGCTACATCTCGTCCTCT
TTCACAATTGGTGCAACTATTTTTCTCTCGAGTCTGTGATTTAAGATGCG
CTTTGATTATGTTATGTATTAAAAACATGGTAAACTTGCAGACAAAAAAT
AGCGATAAAAGAAGTGCATTAAAGTCATAAATAATTATCGTTAATTATGT
TTCTGTCTCTTTGTTAATTCAGCTTTCTAACATGATTTattacaatttaa
aataataGAGAATAGAAAATAAATCAACAAATAATATACGCGCTACATTT
AGCCAGTAGGAATGTcatattcaatttcattatAATTTATTCAATATTGA
GACTTTAATTTTATCTATTGCGAATTTCCCTTAAACTGCAAGTAAGTAGT
TATTAGGATGAAGATTGGGGTTTCAAGATTtgaatttgtaaatttgtttg
gtaaatttaaacTTTTAGAAAGAAGCGACTTAGTAAAATTCGTTCTACTG
TTTCTCGGTATTTCACAAGCCCAAAAATGTCTCAGTGACAAATGAGTAGG
ACCTATATATAAGCTGATTCCTAGTGGAAAATTGGACAATATGAATAGTG
TGTATCTAATGCTAATTATAGAGAGTTCTTTCCCGCAGCTTTTTCAtagg
gggatgaaataaacctagggtgTTTATaaccctctgcaaactatgacctt
cattttcatttgtacATCAATATCAACTTATATCAATAATATGTTCAATA
TTATTCNTCATTTTCATTTGTACATCAATATCAACTTATATCAATAATTA
TGTTCAATATTATTTGGAACAGGGGGTCGATACTCAAATCTAGGACATCA
TGatgtttagtgacgtggtggtataccaaaaactcttaaaaatcctttta
gtacccCATGGGTACACCAAAAGGTGGTATCCGGACTAaaatatgagatt
ttttttagtaaattggtactaaaattggtcattttcataattttatgaat
tgttttcagaatttttgcaattttccaaaaaggttttaaaattttctcat
ttaagttttttttcacatgcacgtaattAAGTAAAATGTAGAGTTTGCTT
ACATTCAAAAggttttgaacggaaggaaaagtcacgtaagaccctcttat
aatcaacaaaaactttacATACTGTAATGtcggaaattcccaaaagacag
cctcacgaacgattttccgtaaaaaaagtaaaattttacgtgcatgtgaa
agtagagtttgcttacgttcaaaacattttttcacatTATTAAAATAGTT
GGTATAACAAAGCTTACAGataatgaccctgtcaatatttttgtcacttt
gtcaagaaaacgactggttacttcaaaagtcactttttagtattctgagg
acttgatttaGACATtttctacggtggagagagcagataaactcgataat
cccattttatctggtcgccggtcttGGTTTGATTTCTgttcgatgtttag
aaactccgtTTAATCTTTGCTCAATTCATAAAGCAGCATTGTTTAAAAGT
ataaattttggagaaaaatgttgcaaaaaccAGCACTCTTGAGAAAATTG
GTCCCGAGAAGACAAAATTTGTCCCGAAAAGACCAAAATTGGGTGGTCTC
TGTGTCTAAATGTCTCTCAAaatttagtacatgtgtactaaaataccact
tctcTAAAATGGGGTGGTGGTATGCAAGAAATTCTCGAAaacccttttag
tactcatacaTGTCCTAGATTTTagcttcccccccccccccttcccaaAA
AAAACAGAGGAATTCTTTcacttttccttaaattttattcaaggctttta
ggcctaaagaCAGATAGCTAAATAAAAGAAATCataaggcgaggccaatt
tagtttgttgttttacggacAAAGTCACCCAAAAAGATGGTCGATCGGTc
ggcgaaaaataaaaaatagaagtAGAATTTTACCTacaaattttcctaaa
aaggcagcaaaaatgcgaagtagaaaataaaagacataaaaaggtcgaat
tcatggatgaaattaaaaattaaatcatgaacatataaacgactggacat
ccatcttttttttaagaacgcactgctagcttcgtagccgcctcgttaaa
aacataaaatgaaacaataaattttgatgatatacctcttgggaatacct
tgctaacaacgccAAAGTTTCGGCGAAAGAGTAGATCTGCAAAAGTCGGT
TCTTAGATGCACGTTTAGAAATCTGTATTATATTATTACATTTTTCATAT
TCCAGTAGTTCAATGTTATGGTGAACAGAGTGTAGTTCTATTAAACTCGG
TTCTTACATACAAGATTAGGAATCTGTATTATTACTATGTTATCTTTCCA
TATTATAGTACATCAATGGTATTATGAAGAGAGCAGATTGGGAAGATTGT
TTACAAACACCAATAGGGATGGTACCAACTGGTTCAGGGAATGCTCTATC
AGCTTCCATCAATTATGCTGCAGAGTAAGACGATTTTCACCCTTGATTGT
TGTCTGTACCAAGTTTCGAAATTCATTGCCGTGTAGGATACTGATTTGTA
TTCAAAACTCTAGCGAACTAAgttatatccaccatctttgattgaaattt
ttatttagaCAAATCGATTCTCTAATGGATGTGGGCCAATTaataattca
taaaaaaaattccgttttttcattttttattcgCCATATGAGATTTTCTA
AACAAATCGTCTAGGATAGGCACCTCCTGCTCTGTGTAAGCAGcagttta
aaagttttgaaaccaaATGGTAAGGAATTCacccaaaaacaaaaaaaaac
attcaaattaaTTCCCTTAAGAGATTTGTCCTCTCCGGTAATATCTATTA
CATTTCACTTTCCCTCctcattttagtgaaaattttggCATAGTGAACGC
AATGTACGTCTTACTGAAAGGTAAATCACACCCAATGGACCTGTTTTCTT
GCCACAACTCTAAAGGAACTGTCTACGGATTTTTAAGTTTAACTTGGGGC
CTGTTATCCGACGTCGATATTGAATCAGAGAAGTACCGTTTTTTGGGACC
GTTACGTTTTCTACTTGTCGGCGTACAACGGATTTTGTCGTTACGTCATT
ATCACGGGACGTTCTATTACTTGCCGGCGCTGGATGACGAGAATCGAGAC
GTCGGGATCGAACAAGACGGAAGCAATACGCAACCAGTGATTGATGATGT
GGACGGAGATTCGTCGCCGACGGCTCCGGAGGATATAGAACTCGTACCCA
AACCTTTAGATTGTGGACCCAAGTGTACCATACCTGCTTTGAATGAAGAA
TGTGGGACTGAAAATtggaagaaaattgaaaacgaGTTTATTTTGCTAGG
TTTACAGTCTATATCTCATTTAGGCTCGGATATGCATTCAGCACCCGGCG
TTCATTTCAGCGACGGCTATTTAGATTTGCAATACGTCAGCCGCGGTACG
ACCAAGAAACGTATGTTAGACTTACTAGATGCATTTGAAACTGGAAAACA
TTTGGAGTATGATGATGTAGAACAGATTAAGATAAAAGCGTTCCGGCTTG
TTCCGGGTGATGACCGTACCGGACATATAGCAGTCGACGGAGAGGAGGTC
GATTATGAACCAATCCAAGGTGAAGTTTTACCTTCACTGGCGAATGCCAT
CATGttaatgaaaatttaaacaACCCCTGTATGTATGTGCTAGCTGTTAa
cttgtctattatgtttacaGTTTGATTTTCTGCTTGGTGTGCTCCCTCAT
TTTTAACCGTCTTCTATATCAGTTTATTGACTTATTTTGGCCGAAATGGA
ATAACTCCCTGTAAACTTCAAGACACACGTGTTTGACTAGATTTCGTGTC
GACGTTAGTCCAAATTCTATGCAAAGCTGAAGTCTTTTAACAATCTTTGA
AGTAAGTAAAGTATTCCGGAAAAATATTTACCATGGTATTTCACGATAAT
GTAATGGGAGTTTTCCTGAAGAATAAAGATAATTATATCGatatcaaaaa
caaagcaaatatGGGCAGAGTAGAGATAATGGAATATATTATTATTCATC
TGAAGGGTACATGAAGGCCTTCGTATACTtatactatactatactatact
TCGATGCTTTTTCTAGCTGTATACTTCTAAGagaaatttgtcaaatgaaC
ACTCAATTTATCATTTTAGGGCAATAGTAGTATTTGGGTGGTAGACAGTC
AAAACACAACGCATTTTTCGAAACTAGAAGATTACGAAAACCAATGGTGA
TCAATATAGTTTAACTTTGGGAGGGGTACTTTAAAAAAGGTTGCATTGCA
GGCCTTCAACATAATAGTCCTAAAGAAGACCTGATTAATTTTGCCTGCGG
TGTCAATATAGGGGATAgcttttagttcaatttttcaataaattcaattt
attatttttacagACCTTCttgaattttagttttgatcttttttttatga
gtataaatatttttctgttttttaagattttttttgcattagATTTTCAC
TGCTATAATACTCTGTATATTTATCATTATCTCAATATTAGAGTTATGAG
GTCCTTACGGTCATAATAGATAATTGGTTATTATTCATATTATGCCCATT
ATGATAGAAAAATTATATAATATGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024943-exon-sc0000514-1491911889:25924..26374 | TCONS_00024943-exon-sc0000514-1491911889:25924..26374 | Clytia hemisphaerica | exon |
| TCONS_00024943-exon-sc0000514-1510915933:25924..26374 | TCONS_00024943-exon-sc0000514-1510915933:25924..26374 | Clytia hemisphaerica | exon |
| TCONS_00024943-exon-sc0000514-1575043694:25924..26374 | TCONS_00024943-exon-sc0000514-1575043694:25924..26374 | Clytia hemisphaerica | exon |
| TCONS_00024943-exon-sc0000514-1491911889:26797..26940 | TCONS_00024943-exon-sc0000514-1491911889:26797..26940 | Clytia hemisphaerica | exon |
| TCONS_00024943-exon-sc0000514-1510915933:26797..26940 | TCONS_00024943-exon-sc0000514-1510915933:26797..26940 | Clytia hemisphaerica | exon |
| TCONS_00024943-exon-sc0000514-1575043694:26797..26940 | TCONS_00024943-exon-sc0000514-1575043694:26797..26940 | Clytia hemisphaerica | exon |
| TCONS_00024943-exon-sc0000514-1491911889:27314..27362 | TCONS_00024943-exon-sc0000514-1491911889:27314..27362 | Clytia hemisphaerica | exon |
| TCONS_00024943-exon-sc0000514-1510915933:27314..27362 | TCONS_00024943-exon-sc0000514-1510915933:27314..27362 | Clytia hemisphaerica | exon |
| TCONS_00024943-exon-sc0000514-1575043694:27314..27362 | TCONS_00024943-exon-sc0000514-1575043694:27314..27362 | Clytia hemisphaerica | exon |
| TCONS_00024943-exon-sc0000514-1491911889:29932..30047 | TCONS_00024943-exon-sc0000514-1491911889:29932..30047 | Clytia hemisphaerica | exon |
| TCONS_00024943-exon-sc0000514-1510915933:29932..30047 | TCONS_00024943-exon-sc0000514-1510915933:29932..30047 | Clytia hemisphaerica | exon |
| TCONS_00024943-exon-sc0000514-1575043694:29932..30047 | TCONS_00024943-exon-sc0000514-1575043694:29932..30047 | Clytia hemisphaerica | exon |
| TCONS_00024943-exon-sc0000514-1491911889:30450..32199 | TCONS_00024943-exon-sc0000514-1491911889:30450..32199 | Clytia hemisphaerica | exon |
| TCONS_00024943-exon-sc0000514-1510915933:30450..32199 | TCONS_00024943-exon-sc0000514-1510915933:30450..32199 | Clytia hemisphaerica | exon |
| TCONS_00024943-exon-sc0000514-1575043694:30450..32199 | TCONS_00024943-exon-sc0000514-1575043694:30450..32199 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000514 | supercontig | sc0000514:25924..32199 + |
Blast
BLAST of TCONS_00024943 vs. Swiss-Prot (Human)
Match: SPHK1 (Sphingosine kinase 1 OS=Homo sapiens GN=SPHK1 PE=1 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 2.634e-48 Identity = 109/303 (35.97%), Postives = 158/303 (52.15%), Query Frame = 3
Query: 642 EYINGIMKRADWEDCLQTPIGMVPTGSGNALSASINYAA------DENFGIVNAMYVLLKGKSHPMDLFSCHNSKG-TVYGFLSLTWGLLSDVDIESEKYRFLGPLRFLLVGVQRILSLRHYHGTFYYLPALDDENRDVGIEQDGSNTQPVIDDVDGDSSPTAPEDIELVPKPLDCGPKCTIPALNEECGTENWKKIENE-FILLGLQSISHLGSDMHSAPGVHFSDGYLDLQYVSRGTTKKRMLDLLDAFETGKHLEYDD--VEQIKIKAFRLVPGDDRTGHIAVDGEEVDYEPIQGEVLPS 1520
E +NG+M+R DWE +Q P+ +P GSGNAL+AS+N+ A +E+ + + + S PM+L S H + G ++ LSL WG ++DVD+ESEKYR LG +RF L R+ +LR Y G YLP VG + PV+ P D LVP EE +W + +E F+L+ SHLGS+M +AP + G + L YV G ++ +L L A E G+H+EY+ + + + AFRL P D + G AVDGE + E +QG+V P+
Sbjct: 86 EVVNGLMERPDWETAIQKPLCSLPAGSGNALAASLNHYAGYEQVTNEDLLTNCTLLLCRRLLS-PMNLLSLHTASGLRLFSVLSLAWGFIADVDLESEKYRRLGEMRFTLGTFLRLAALRTYRGRLAYLP--------VGRVGSKTPASPVVVQ-------QGPVDAHLVPL--------------EEPVPSHWTVVPDEDFVLVLALLHSHLGSEMFAAPMGRCAAGVMHLFYVRAGVSRAMLLRLFLAMEKGRHMEYECPYLVYVPVVAFRLEPKDGK-GVFAVDGELMVSEAVQGQVHPN 357 HSP 2 Score: 50.447 bits (119), Expect = 2.634e-48 Identity = 20/56 (35.71%), Postives = 34/56 (60.71%), Query Frame = 1
Query: 463 FPEQRKYFILINPKSGKGKSLELFNSTIEPILKDAMIKYEAFITEYSGHVMKLAKD 630
P + +L+NP+ GKGK+L+LF S ++P+L +A I + +TE H +L +
Sbjct: 11 LPRPCRVLVLLNPRGGKGKALQLFRSHVQPLLAEAEISFTLMLTERRNHARELVRS 66
The following BLAST results are available for this feature:
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