TCONS_00024939 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024939
Unique NameTCONS_00024939
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1033

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024939 ID=TCONS_00024939|Name=TCONS_00024939|organism=Clytia hemisphaerica|type=transcript|length=1033bp
AATGGACCATTAAAATATACCTGGTAACATGTTATAGTATCTTGGAGTAA
GcacataaaaaagagcaaaatagcCTGCGCTGCAGTTGTGGGATGGTAGT
GGTCACAGACAAACCTCTCATTGGGACTAAAATaattgaccaatgaaaaa
aattttttaaccaaaacattccccataaaatttgatgaaaagtcataaaa
tttcagaTTAATAGCCTCACTAGTTAAAAAATGCCAGCCAATTTTCTAAC
AGGGGGGGCACTTTGTGCCCcccctctcagtaggtagggttaaggGAGCT
ATTGAGGAAAATATGATCAATGGCACCTCCATCTACATGTGTTGGAAAAT
CTACGAGTGGATTGAAATCTTGAAGGCAGTATAATAGATTtcgtttttct
tcactttctttcaGCAGGTCAATATTAAAATCGCCAAAGATAATATCGAT
ATCTTTTAACTCAGATAGCACTGTGTGTAGACTAGAAAAAAAAGAGGTCA
GTGTTTCTTGATGACTGCGGTAGAGTATAAGAATGTTAAAAGTCCTGTCA
CAGTATGTATTTTTCTTAAGTTTTAAATAAGAAAACCCAGATACATGCTC
GTGTTCCAGAATAGAGAAAGATTCTTTGTATCCAATCGCCAAGCTTTTAA
ATTTGTCTGTATCATTGttaaagatcattgtaaaaggTTTCATGTTGTAT
TCCACTTCTTCAATATTTGAATCACAATTGATTTGAGTCTCTGCAAAGAA
AACAACGTCAGAATCATAAACTTCTTTATGGTGCTTTAGTGTTGCAGATT
TTCCTCTGAGCGATCTGATATTTAGAAAAGTCAAAACCAGATTCTCTTCT
GCGAGGGGGGAATGAATTTAGtggttccaaaatattttcttcacaCCGAA
GTCTTTTATACTCTTCATCAGCAAGTTTACTAGATTTGATAGCCGAAGAT
GAATAATCACCAATAAGAAATAAGCCGTTGAGGGAAGTAACACGACTCAA
TGCAACATACATTTGACCTGGTTTAAATTGGNN
Run BLAST on NCBI

protein sequence of TCONS_00024939-protein

>TCONS_00024939-protein ID=TCONS_00024939-protein|Name=TCONS_00024939-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
MKPFTMIFNNDTDKFKSLAIGYKESFSILEHEHVSGFSYLKLKKNTYCDR
TFNILILYRSHQETLTSFFSSLHTVLSELKDIDIIFGDFNIDLLKESEEK
RNLLYCLQDFNPLVDFPTHVDGGAIDHIFLNSSLNPTY
Run BLAST on NCBI

transcript from alignment at sc0000513:226983..228015

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024939 ID=TCONS_00024939|Name=TCONS_00024939|organism=Clytia hemisphaerica|type=transcript|length=1033bp|location=Sequence derived from alignment at sc0000513:226983..228015 (Clytia hemisphaerica)
NNCCAATTTAAACCAGGTCAAATGTATGTTGCATTGAGTCGTGTTACTTC
CCTCAACGGCTTATTTCTTATTGGTGATTATTCATCTTCGGCTATCAAAT
CTAGTAAACTTGCTGATGAAGAGTATAAAAGACTTCGGtgtgaagaaaat
attttggaaccaCTAAATTCATTCCCCCCTCGCAGAAGAGAATCTGGTTT
TGACTTTTCTAAATATCAGATCGCTCAGAGGAAAATCTGCAACACTAAAG
CACCATAAAGAAGTTTATGATTCTGACGTTGTTTTCTTTGCAGAGACTCA
AATCAATTGTGATTCAAATATTGAAGAAGTGGAATACAACATGAAAcctt
ttacaatgatctttaaCAATGATACAGACAAATTTAAAAGCTTGGCGATT
GGATACAAAGAATCTTTCTCTATTCTGGAACACGAGCATGTATCTGGGTT
TTCTTATTTAAAACTTAAGAAAAATACATACTGTGACAGGACTTTTAACA
TTCTTATACTCTACCGCAGTCATCAAGAAACACTGACCTCTTTTTTTTCT
AGTCTACACACAGTGCTATCTGAGTTAAAAGATATCGATATTATCTTTGG
CGATTTTAATATTGACCTGCtgaaagaaagtgaagaaaaacgaAATCTAT
TATACTGCCTTCAAGATTTCAATCCACTCGTAGATTTTCCAACACATGTA
GATGGAGGTGCCATTGATCATATTTTCCTCAATAGCTCccttaaccctac
ctactgagaggggGGGCACAAAGTGCCCCCCCTGTTAGAAAATTGGCTGG
CATTTTTTAACTAGTGAGGCTATTAAtctgaaattttatgacttttcatc
aaattttatggggaatgttttggttaaaaaatttttttcattggtcaatt
ATTTTAGTCCCAATGAGAGGTTTGTCTGTGACCACTACCATCCCACAACT
GCAGCGCAGgctattttgctcttttttatgtgCTTACTCCAAGATACTAT
AACATGTTACCAGGTATATTTTAATGGTCCATT

Coding sequence (CDS) from alignment at sc0000513:226983..228015

>TCONS_00024939 ID=TCONS_00024939|Name=TCONS_00024939|organism=Clytia hemisphaerica|type=CDS|length=417bp|location=Sequence derived from alignment at sc0000513:226983..228015 (Clytia hemisphaerica)
ATGAAAccttttacaatgatctttaaCAATGATACAGACAAATTTAAAAG
CTTGGCGATTGGATACAAAGAATCTTTCTCTATTCTGGAACACGAGCATG
TATCTGGGTTTTCTTATTTAAAACTTAAGAAAAATACATACTGTGACAGG
ACTTTTAACATTCTTATACTCTACCGCAGTCATCAAGAAACACTGACCTC
TTTTTTTTCTAGTCTACACACAGTGCTATCTGAGTTAAAAGATATCGATA
TTATCTTTGGCGATTTTAATATTGACCTGCtgaaagaaagtgaagaaaaa
cgaAATCTATTATACTGCCTTCAAGATTTCAATCCACTCGTAGATTTTCC
AACACATGTAGATGGAGGTGCCATTGATCATATTTTCCTCAATAGCTCcc
ttaaccctacctactga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014021XLOC_014021Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024939-proteinTCONS_00024939-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024939-exon-sc0000513-1491911889:226983..228015TCONS_00024939-exon-sc0000513-1491911889:226983..228015Clytia hemisphaericaexon
TCONS_00024939-exon-sc0000513-1510915933:226983..228015TCONS_00024939-exon-sc0000513-1510915933:226983..228015Clytia hemisphaericaexon
TCONS_00024939-exon-sc0000513-1575043694:226983..228015TCONS_00024939-exon-sc0000513-1575043694:226983..228015Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000513supercontigsc0000513:226983..228015 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.6589	8.84077	6.06083	5.60854	7.03578	4.66264	11.0027	10.8512	19.8844	15.0065	14.7634	27.2534	12.0355	13.0005	8.27305	4.67942	4.26692	5.93753	13.4707	12.1936	11.9641	12.8957	5.25025	5.82024	9.786	12.4338	13.2653	12.1468	8.24363	7.97475
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024939 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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