TCONS_00024926 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024926
Unique NameTCONS_00024926
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2104

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024926 ID=TCONS_00024926|Name=TCONS_00024926|organism=Clytia hemisphaerica|type=transcript|length=2104bp
GAACAAGCTTCATCATGTTTTTCAAGCTTACGTATCTCTATTCTATGCTG
ttaccttttcttttttgttcgaacattttcatcttcattcagcATGTTTC
CGACTATCTAtcccaggtaggtccattcagcatgttgcttgttaaatTTT
GCTTTCCATAGTGTTCGATTGTCACCTTAGACACATAGGTaccttaaaaa
gctttaaactGTCAAATCCGACAAATTTAATCCCGTTgatgatttatttt
catttaccatgtttaaaaacttttcaatatagAATATAATGTatcaatca
atgaaaaagttagtacctcCATTTCTAAATGCACTGCATTATAAAGAGAA
AACAGCGATTGTAGATATTTTTGGGAAACACTCGTACAATGGCTTGTTAC
AGCAAAGTAAAATCCTGGCCAAGAAGATGATAAGTGTTGCTCAAAAGGAT
TCTGGACTGAATCCTTTGGCACTACATAATCAAACTATAGCTTTTCTTTG
TTCAAACGATCATACCTATGTTAATACACAATGGGCAATTTGGATGACTG
GAGGAACTGCTGTTCCAATTTCAAGATACCATCCTCCTAATGAATTACAA
TATATCATTAAAGATTGTTCTCCTAGTATAATTGTTGGCACTGAGCAATA
TAGTGATATCTTATCAGACATCACTAAGAAATTAGATACTGATCTTCTCA
TTTTTGAGTCACTATTAAAAGATACCACTCAAATAAAACATCAGAACACT
GGAAAGAATCTATTTAAAGAAGCTGTTATAAATGACAAGAATTTGGAGAC
AACCTGGGATAATATTGACTGGAGCAACACAAATGCTCACATAGTTTATA
CTAGTGGTACAACAGGACACCCTAAAGGAGTAGTCACCACCTTTAAAAAT
TTGTTATCACAAGTAAATGATATTAATACATCTTGGGAGGTATCCGCCAC
AGATGGTTATCTTCATGTTTTACCGTTACATCATGTTCATGGGATAGTGA
ACAATTTGATATGTCCACTCTATGCAGGTGCCTGTGTAACAATGTTGGAT
GGATTCGATGCTAAAAAGAGAATGAAAATGTTAACGTGTTTCATGCAGTC
CCGACCATCTACTCTAAACTCATTGACTATCATCAAAATGAACTGAAAGA
ACAATCTAACAACATAGTTAAAACTCTTACAAGCAAATTAAGGCTTATGG
TGTCTGGGTCAGCTGCTCTCCCTGTTCCAGTATTAAAGAAATGGCAGGAA
ATATCAGGGCATCTGCTACTTGAAAGATATGGCATGACTGAAATTGGAAT
GGCTCTTACAAACTCACTCAACGGGAAAAGAATCGAAGGGTCTGTTGGAA
AACCATTTCCTTCAGTCAAATTTCGTATTGTCTCTGAAGATGGCAGAATA
GTGTTGTGTGAGGGAGACAGTGAAAATATTATACAGCATCAAGAAGGAGT
TGGTGCATTAGAAATCAAAGGAGAATCAGTTTTCAAGGGATACTTGAATC
TTGACAATGTTACTAAAGAATCGTTTAATGACGAAGGATGGTTTTTGACA
GgTGACACAGCAATGTATGATCAAGAAGAAGATGTTATCAGAATATTAGG
CAGGACGTCTGTTGACATTATAAAAAGTGGTGGTTACAAACTTTCAGcat
tggaaattgaaaaatatttactagtCATTCCTGGTGTTAAAGAAGTTGCT
GTAGTAGGACTCCCTGATGAAGTATATGGTGAATCTGTATGCGCTATTAT
GGTACCAGAAAAAGACTTTGATATTGATTTAACATACATTCGAGAAAGTT
GTCAAGATAAAAtggcaaaatataaaattcCTAGCAAATTGAAAGTTGTA
gatgaaataccaaaaaatgcaatgGGCAAAATTAATAAGAAGGAATTGAA
AGCTACGCTTTTTAAAGAATAATcgattttaaaaagatatttttagtATC
TGTTACcccttttgtattttttcataaatttttataGACATTAATTGTTA
TACAAAtttattaaaacatttttattgtaaattttgtcaattctaaAAAT
GAGAAGAACAAATTCTTATTTGTCTTTTTCAGATTTGAATTAACCTTGCT
CTcg
Run BLAST on NCBI

transcript from alignment at sc0000513:202568..205659-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024926 ID=TCONS_00024926|Name=TCONS_00024926|organism=Clytia hemisphaerica|type=transcript|length=3092bp|location=Sequence derived from alignment at sc0000513:202568..205659- (Clytia hemisphaerica)
GAACAAGCTTCATCATGTTTTTCAAGCTTACGTATCTCTATTCTATGCTG
TTACCTTTTCTTTTTTGTTCGAACATTTTCATCTTCATTCAGCATGTTTC
CGACTATCTATCCCAGGTAGGTCCATTCAGCATGTTGCTTGTTAAATTTT
GCTTTCCATAGTGTTCGATTGTCACCTTAGACACATAGGTACCTTAAAAA
GCTTTAAACTGTCAAATCCGACAAATTTAATCCCGTTGATGATTTATTTT
CATTTACCATGTTTAAAAACTTTTCAATATAGAATATAATGTATCAATCA
ATGAAAAAGTTAGTACCTCCATTTCTAAATGCACTGCATTATAAAGAGAA
AACAGCGATTGTAGATATTTTTGGGAAACACTCGTACAATGGCTTGTTAC
AGCAAAGTAAAATCCTGGCCAAGAAGATGATAAGTGTTGCTCAAAAGGAT
TCTGGACTGAATCCTTTGGCACTACATAATCAAACTATAGCTTTTCTTTG
TTCAAACGATCATACCTATGTTAATACACAATGGGCAATTTGGATGACTG
GAGGAACTGCTGTTCCAATTTCAAGATACCATCCTCCTAATGAATTACAA
TATATCATTAAAGATTGTTCTCCTAGTATAATTGTTGGCACTGAGCAATA
TAGTGATATCTTATCAGACATCACTAAGAAATTAGATACTGATCTTCTCA
TTTTTGAGTCACTATTAAAAGATACCACTCAAATAAAACATCAGAACACT
GGAAAGAATCTATTTAAAGAAGCTGTTATAAATGACAAGAATTTGGAGAC
AACCTGGGATAATATTGACTGGAGCAACACAAATGCTCACATAGTTTATA
CTAGTGGTACAACAGGACACCCTAAAGGAGTAGTCACCACCTTTAAAAAT
TTGTTATCACAAGTAAATGATATTAATACATCTTGGGAGGTATCCGCCAC
AGATGGTTATCTTCATGTTTTACCGTTACATCATGTTCATGGGATAGTGA
ACAATTTGATATGTCCACTCTATGCAGGTGCCTGTGTAACAATGTTGGAT
GGATTCGATGCTAAAAAGGTTAGCTTCAACTATATAGATTTTATTATGTT
TAATCTGGTTTAATCATTAGTTTTCTTCTCTTTATCTAAGCATCACTTCC
ATTTGTTTTTATATCTATATTCACACTTTTAAGTTGATTCGATAACTTAC
TCCCGCTTCATCTAATAGTTGTAGAAAAATCATTTATAGTATTAATTCTC
TGGGTTTCAGGTTTGGTCTAATCTTTTAGAGAATGAAAATGTTAACGTGT
TTCATGCAGTCCCGACCATCTACTCTAAACTCATTGACTATCATCAAAAT
GAACTGAAAGAACAATCTAACAACATAGTTAAAACTCTTACAAGCAAATT
AAGGTATTCTAATTAAGTTTTAATTTTAAGGTTCAATCTACATGCTTGAA
TGTAGAAAATGTTTTAAAGTTTTAAAGTGAATCTGCCTGACTGAAACTCT
CCGAACTATTTATTTACATGTCTGTTTCAGTTATCTTTACGTTAATCTAT
TAATTCTGGGGAGTTAGTAGATCTGTCTACAAAATTTTGAAAATTCTTCA
GGCTTATGGTGTCTGGGTCAGCTGCTCTCCCTGTTCCAGTATTAAAGAAA
TGGCAGGAAATATCAGGGCATCTGCTACTTGAAAGATATGGCATGACTGA
AATTGGAATGGCTCTTACAAACTCACTCAACGGGAAAAGAATCGAAGGTA
TGATATTTATTTCTGCTAATAAGTAAATATATTTATAAGTGCTCAAATCT
CTCTTGGGGAGTTAATTGACACAAAAACCGGCAATATGAATGAGAGTTCA
GCCCTGGCAATAAGACACTTTTAATGTCATGCCCAGATTTCCACAGCTCT
GTAAACTATTTACATGCTAATTTTCATGCATTTACGCAAGTGAAAAAGCC
CATTCACGCATTCACCCAAACTGCTGGGTGCCCCATATACCTATTCACAT
TCTAATGTTGGTGACCTGATTACCAGGTCATCATGTTAATTTCTTATTTG
CTAATTGCAGTAGTAACTGTCATGGTTTATCATCCCTGTAAGTCAATATC
CATTTTCTCAATAGGGTCTGTTGGAAAACCATTTCCTTCAGTCAAATTTC
GTATTGTCTCTGAAGATGGCAGAATAGTGTTGTGTGAGGGAGACAGTGAA
AATATTATACAGCATCAAGAAGGAGTTGGTGCATTAGAAATCAAAGGAGA
ATCAGTTTTCAAGGGATACTTGAATCTTGACAATGTTACTAAAGAATCGT
TTAATGACGAAGGATGGTTTTTGACAGGTGTCTTTTCATGTCTTATTTTC
CCTTATTTTTTGCTTTTCTTTGGAATTACTAATTATGGTTTTTTATTGTA
GACAACCTTTTGATTTATACTGTAAAAGCTTTGTTTTGATTTTTTTTGTC
TGTCCTTTCTAGAAATTAAATTCAACAAGGTTTATTCCTGGTTCTACTGT
GTGACGCTATATAAAATATAAACATCTTTTTCTAAAAAGGTGACACAGCA
ATGTATGATCAAGAAGAAGATGTTATCAGAATATTAGGCAGGACGTCTGT
TGACATTATAAAAAGTGGTGGTTACAAACTTTCAGCATTGGAAATTGAAA
AATATTTACTAGTCATTCCTGGTGTTAAAGAAGTTGCTGTAGTAGGACTC
CCTGATGAAGTATATGGTGAATCTGTATGCGCTATTATGGTACCAGAAAA
AGACTTTGATATTGATTTAACATACATTCGAGAAAGTTGTCAAGATAAAA
TGGCAAAATATAAAATTCCTAGCAAATTGAAAGTTGTAGATGAAATACCA
AAAAATGCAATGGGCAAAATTAATAAGAAGGAATTGAAAGCTACGCTTTT
TAAAGAATAATCGATTTTAAAAAGATATTTTTAGTATCTGTTACCCCTTT
TGTATTTTTTCATAAATTTTTATAGACATTAATTGTTATACAAATTTATT
AAAACATTTTTATTGTAAATTTTGTCAATTCTAAAAATGAGAAGAACAAA
TTCTTATTTGTCTTTTTCAGATTTGAATTAACCTTGCTCTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014011XLOC_014011Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024926-exon-sc0000513-1575043694:204592..205659TCONS_00024926-exon-sc0000513-1575043694:204592..205659Clytia hemisphaericaexon
TCONS_00024926-exon-sc0000513-1575043694:204257..204380TCONS_00024926-exon-sc0000513-1575043694:204257..204380Clytia hemisphaericaexon
TCONS_00024926-exon-sc0000513-1575043694:203913..204058TCONS_00024926-exon-sc0000513-1575043694:203913..204058Clytia hemisphaericaexon
TCONS_00024926-exon-sc0000513-1575043694:203333..203545TCONS_00024926-exon-sc0000513-1575043694:203333..203545Clytia hemisphaericaexon
TCONS_00024926-exon-sc0000513-1575043694:202568..203120TCONS_00024926-exon-sc0000513-1575043694:202568..203120Clytia hemisphaericaexon
TCONS_00024926-exon-sc0000513-1510915933:204592..205659TCONS_00024926-exon-sc0000513-1510915933:204592..205659Clytia hemisphaericaexon
TCONS_00024926-exon-sc0000513-1510915933:204257..204380TCONS_00024926-exon-sc0000513-1510915933:204257..204380Clytia hemisphaericaexon
TCONS_00024926-exon-sc0000513-1510915933:203913..204058TCONS_00024926-exon-sc0000513-1510915933:203913..204058Clytia hemisphaericaexon
TCONS_00024926-exon-sc0000513-1510915933:203333..203545TCONS_00024926-exon-sc0000513-1510915933:203333..203545Clytia hemisphaericaexon
TCONS_00024926-exon-sc0000513-1510915933:202568..203120TCONS_00024926-exon-sc0000513-1510915933:202568..203120Clytia hemisphaericaexon
TCONS_00024926-exon-sc0000513-1491911889:204592..205659TCONS_00024926-exon-sc0000513-1491911889:204592..205659Clytia hemisphaericaexon
TCONS_00024926-exon-sc0000513-1491911889:204257..204380TCONS_00024926-exon-sc0000513-1491911889:204257..204380Clytia hemisphaericaexon
TCONS_00024926-exon-sc0000513-1491911889:203913..204058TCONS_00024926-exon-sc0000513-1491911889:203913..204058Clytia hemisphaericaexon
TCONS_00024926-exon-sc0000513-1491911889:203333..203545TCONS_00024926-exon-sc0000513-1491911889:203333..203545Clytia hemisphaericaexon
TCONS_00024926-exon-sc0000513-1491911889:202568..203120TCONS_00024926-exon-sc0000513-1491911889:202568..203120Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000513supercontigsc0000513:202568..205659 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.93351	1.64099e-08	0	0	1.29616e-07	0	0	0	0.842412	0	0	0.357129	6.98984e-06	0	0	0	5.80974e-05	0.381474	8.42051e-10	0	0.536767	0	0.981595	0.424608	0.773565	0	0	0	0	0
Blast
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BLAST of TCONS_00024926 vs. Swiss-Prot (Human)
Match: ACSF3 (Acyl-CoA synthetase family member 3, mitochondrial OS=Homo sapiens GN=ACSF3 PE=1 SV=3)

HSP 1 Score: 252.677 bits (644), Expect = 1.620e-114
Identity = 134/289 (46.37%), Postives = 191/289 (66.09%), Query Frame = 3 
Query: 1068 ENENVNVFHAVPTIYSKLIDYHQNELKE-QSNNIVKTLTS-KLRLMVSGSAALPVPVLKKWQEISGHLLLERYGMTEIGMALTNSLNGK-RIEGSVGKPFPSVKFRIVSEDGRIVLC------EGD---SENIIQHQEGVGALEIKGESVFKGYLNLDNVTKESFNDEGWFLTGDTAMYDQEEDVIRILGRTSVDIIKSGGYKLSALEIEKYLLVIPGVKEVAVVGLPDEVYGESVCAIMVPEKDFDIDLTYIRESCQDKMAKYKIPSKLKVVDEIPKNAMGKINKKEL 1898
            E   +NVF AVPTIY+KL++Y+     +  + + ++ +   K+RLMVSGSAALP+PVL+KW+ I+GH LLERYGMTEIGMAL+  L    R+ GSVG P P V+ RIVSE+ +   C      EGD   ++     +E  G L ++G SVF+ Y N    TK +F  +GWF TGDT ++   +  IR  GRTSVDIIK+GGYK+SALE+E +LL  P + +VAV+G+PD  +G+ V A++   +   +    ++E  ++ +A Y +PS+L +V+EIP+N MGKI+KK L
Sbjct:  283 ETPRINVFMAVPTIYTKLMEYYDRHFTQPHAQDFLRAVCEEKIRLMVSGSAALPLPVLEKWKNITGHTLLERYGMTEIGMALSGPLTTAVRLPGSVGTPLPGVQVRIVSENPQREACSYTIHAEGDERGTKVTPGFEEKEGELLVRGPSVFREYWNKPEETKSAFTLDGWFKTGDTVVFKDGQYWIR--GRTSVDIIKTGGYKVSALEVEWHLLAHPSITDVAVIGVPDMTWGQRVTAVVTLREGHSLSHRELKEWARNVLAPYAVPSELVLVEEIPRNQMGKIDKKAL 569

HSP 2 Score: 180.259 bits (456), Expect = 1.620e-114
Identity = 90/256 (35.16%), Postives = 142/256 (55.47%), Query Frame = 1 
Query:  316 PPFLNALHYKEKTAIVDIFGKHSYNGLLQQSKILAKKMISVAQKDSGLNPLALHNQTIAFLCSNDHTYVNTQWAIWMTGGTAVPISRYHPPNELQYIIKDCSPSIIVGTEQYSDILSDITKKLDTDLL-----IFESLLKDTTQIKHQNTGKNLFKEAVINDKNLETTWDNIDWSNTNAHIVYTSGTTGHPKGVVTTFKNLLSQVNDINTSWEVSATDGYLHVLPLHHVHGIVNNLICPLYAGACVTMLDGFDAKK 1068
            P F  AL + ++ A+VD  G+H+Y  L  +S  L++++  +     G     L  + ++FLC+ND +YV  QWA WM+GG AVP+ R HP  +L+Y+I D   S+++ +++Y ++LS + +KL   LL     I+   +++  ++     G                      W N  A I+YTSGTTG PKGV++T +N+ + V  +   W  +  D  LHVLPLHHVHG+VN L+CPL+ GA   M+  F  ++
Sbjct:   45 PVFTRALAFGDRIALVDQHGRHTYRELYSRSLRLSQEICRLCGCVGG----DLREERVSFLCANDASYVVAQWASWMSGGVAVPLYRKHPAAQLEYVICDSQSSVVLASQEYLELLSPVVRKLGVPLLPLTPAIYTGAVEEPAEVPVPEQG----------------------WRNKGAMIIYTSGTTGRPKGVLSTHQNIRAVVTGLVHKWAWTKDDVILHVLPLHHVHGVVNALLCPLWVGATCVMMPEFSPQQ 274
The following BLAST results are available for this feature:
BLAST of TCONS_00024926 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACSF31.620e-11446.37Acyl-CoA synthetase family member 3, mitochondrial... [more]
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