TCONS_00024901 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024901
Unique NameTCONS_00024901
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length634

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024901 ID=TCONS_00024901|Name=TCONS_00024901|organism=Clytia hemisphaerica|type=transcript|length=634bp
caggcacgacggaagctttttatatctggtacggcgaatgaggaaattta
AGCGATTTTATAGCGATTTGACCGACGAAGAGGAAAACTTCGGGTATTTT
TGTCAAAATCTGGTACGGCGGCCGCCGTACCTGCCGTACCCGTTGCGTCG
TGCCTGTAAAAAAAACACCTGACTTAAAACACTAAACTCTGAACCCTCAA
ACATTAACTTTATTTACGTAATTTAAATCaatatttagaaaaagtcaCCT
GATCAAGAAAGATAATGCACGCCTTAAAAATAGTACGAAGATGCTCATTC
CAGTCTCAGATTTCAATACACGAGCAATTCATTCAACAACaagcaatttt
ttaaattcatgtttttgttttataataCAGTTGAATGGATTTCTAAAAGT
CCTCTTGGATATCCAGTCGTTGGGTTCACAACCTTCATTGCTGCCAACAG
AGCATCAATATTTACCCAAGCTGGTCCGTATTTTACATCCAACAACAACA
TGGAATGATTTTGTTTGTGGTAGGCTGCAATCAAGCTGTAATGTGAACCA
CAGTTATTCTGCTGACCGTACAATAGACAAGAATCAAAGTATGCAATGGA
ACAAGAAGCACGCCAAATAGATTCCAAATTTGAG
Run BLAST on NCBI

protein sequence of TCONS_00024901-protein

>TCONS_00024901-protein ID=TCONS_00024901-protein|Name=TCONS_00024901-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
MLIPVSDFNTRAIHSTTSNFLNSCFCFIIQLNGFLKVLLDIQSLGSQPSL
LPTEHQYLPKLVRILHPTTTWNDFVCGRLQSSCNVNHSYSADRTIDKNQS
MQWNKKHAK
Run BLAST on NCBI

transcript from alignment at sc0000512:19710..20343

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024901 ID=TCONS_00024901|Name=TCONS_00024901|organism=Clytia hemisphaerica|type=transcript|length=634bp|location=Sequence derived from alignment at sc0000512:19710..20343 (Clytia hemisphaerica)
CTCAAATTTGGAATCTATTTGGCGTGCTTCTTGTTCCATTGCATACTTTG
ATTCTTGTCTATTGTACGGTCAGCAGAATAACTGTGGTTCACATTACAGC
TTGATTGCAGCCTACCACAAACAAAATCATTCCATGTTGTTGTTGGATGT
AAAATACGGACCAGCTTGGGTAAATATTGATGCTCTGTTGGCAGCAATGA
AGGTTGTGAACCCAACGACTGGATATCCAAGAGGACTTTTAGAAATCCAT
TCAACTGtattataaaacaaaaacatgaatttaaaaaattgcttGTTGTT
GAATGAATTGCTCGTGTATTGAAATCTGAGACTGGAATGAGCATCTTCGT
ACTATTTTTAAGGCGTGCATTATCTTTCTTGATCAGGtgactttttctaa
atattGATTTAAATTACGTAAATAAAGTTAATGTTTGAGGGTTCAGAGTT
TAGTGTTTTAAGTCAGGTGTTTTTTTTACAGGCACGACGCAACGGGTACG
GCAGGTACGGCGGCCGCCGTACCAGATTTTGACAAAAATACCCGAAGTTT
TCCTCTTCGTCGGTCAAATCGCTATAAAATCGCTtaaatttcctcattcg
ccgtaccagatataaaaagcttccgtcgtgcctg

Coding sequence (CDS) from alignment at sc0000512:19710..20343

>TCONS_00024901 ID=TCONS_00024901|Name=TCONS_00024901|organism=Clytia hemisphaerica|type=CDS|length=330bp|location=Sequence derived from alignment at sc0000512:19710..20343 (Clytia hemisphaerica)
CTATTTGGCGTGCTTCTTGTTCCATTGCATACTTTGATTCTTGTCTATTG
TACGGTCAGCAGAATAACTGTGGTTCACATTACAGCTTGATTGCAGCCTA
CCACAAACAAAATCATTCCATGTTGTTGTTGGATGTAAAATACGGACCAG
CTTGGGTAAATATTGATGCTCTGTTGGCAGCAATGAAGGTTGTGAACCCA
ACGACTGGATATCCAAGAGGACTTTTAGAAATCCATTCAACTGtattata
aaacaaaaacatgaatttaaaaaattgcttGTTGTTGAATGAATTGCTCG
TGTATTGAAATCTGAGACTGGAATGAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013992XLOC_013992Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024901-proteinTCONS_00024901-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024901-exon-sc0000512-1491911889:19710..20343TCONS_00024901-exon-sc0000512-1491911889:19710..20343Clytia hemisphaericaexon
TCONS_00024901-exon-sc0000512-1510915933:19710..20343TCONS_00024901-exon-sc0000512-1510915933:19710..20343Clytia hemisphaericaexon
TCONS_00024901-exon-sc0000512-1575043694:19710..20343TCONS_00024901-exon-sc0000512-1575043694:19710..20343Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000512supercontigsc0000512:19710..20343 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.43685	2.77383	1.41274	2.66303	0.757471	1.61333	1.14003	0.161459	2.87773	4.32962	1.89542	1.36405	9.42119	4.66477	5.12262	1.31653	1.05205	9.08352	5.70982	9.54501	0.726747	0.950388	7.79616	6.06163	2.00854	2.74009	83.6524	69.8755	7.40807	6.81707
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024901 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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