TCONS_00024899 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024899
Unique NameTCONS_00024899
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length334

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024899 ID=TCONS_00024899|Name=TCONS_00024899|organism=Clytia hemisphaerica|type=transcript|length=334bp
TCTTAGGCTAGCATAAATAAACATCATTATGCCTGGTATCGTGCAAGATT
CAGTTGTTTCATCAGAACAAAATTCGCCAGACCCTGTTGGAAAAAAGAAA
CTTGAAGTTGATTCTTCTCTATTGAAAGATGACCAGGAAACTTCTTCAAA
TGGTGCTGAAAAAGCTGAAGAAAACATTGACACaagtgaaacaaaaaaag
aggcTGAAAAGCCAACAACAGAATCTACAGATAAGCCAACAACAGAATCT
ACAGATAAGCCAgAAGTACCAATGAAGCTGTTGGATTTGAAGGTATCAAT
AAATGGATTGAGTGAAACTCTGCCTGTCCAACTN
Run BLAST on NCBI

protein sequence of TCONS_00024899-protein

>TCONS_00024899-protein ID=TCONS_00024899-protein|Name=TCONS_00024899-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
MPGIVQDSVVSSEQNSPDPVGKKKLEVDSSLLKDDQETSSNGAEKAEENI
DTSETKKEAEKPTTESTDKPTTESTDKPEVPMKLLDLKVSINGLSETLPV
QX
Run BLAST on NCBI

transcript from alignment at sc0000512:239817..240585-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024899 ID=TCONS_00024899|Name=TCONS_00024899|organism=Clytia hemisphaerica|type=transcript|length=769bp|location=Sequence derived from alignment at sc0000512:239817..240585- (Clytia hemisphaerica)
TCTTAGGCTAGCATAAATAAACATCATTATGCCTGGTATCGTGCAAGATT
CAGTTGTTTCATCAGAACAAAATTCGCCAGACCCTGTTGGAAAAAAGAAA
CTTGAAGTTGATTCTTCTCTATTGAAAGATGACCAGGAAACTTCTTCAAA
TGGTGCTGAAAAAGCTGAAGAAAACATTGACACAAGTGAAACAAAAAAAG
AGGCTGAAAAGCCAACAACAGAATCTACAGATAAGCCAACAACAGAATCT
ACAGATAAGCCAGGTATCATTTTCATCATCTTAAAATACTTCTTGAAATT
TATATACAGACGATTTGAATTCGCATAATGTCTCAAAATAGTATTTTCTT
CGTAAAAAAATACACTAGTCAAATTTTATGTATCATCAAGGATCAATTTT
CAGAGTGAAGTGAATTTCTCCATTCCAATTTATTCGAATTTATTCCAAAT
CATACCAAGCATTAGTAACAATGCCAATGCCAGACTTTTTTTACATTTAT
ATAGAGTAGAGATTGACCTTGTGTACATCGAAGCGCCACGAGAATATTTA
AAATGAACCTAACGTAACAACATTCTCTGCGGAAGACAATTCCAAGTTAT
GCACATTACATGTCCAGCCCATCTGAGCTGTTGACAACAAATTTAGGTGT
CTGTAAAACTGATATTGATAACTTTTTCCTAACTTTTTATCCATCTAGAA
GTACCAATGAAGCTGTTGGATTTGAAGGTATCAATAAATGGATTGAGTGA
AACTCTGCCTGTCCAACTN

Coding sequence (CDS) from alignment at sc0000512:239817..240585-

>TCONS_00024899 ID=TCONS_00024899|Name=TCONS_00024899|organism=Clytia hemisphaerica|type=CDS|length=612bp|location=Sequence derived from alignment at sc0000512:239817..240585- (Clytia hemisphaerica)
AAGTACCAATGAAGCTGTTGGATTTGAAGGTATCAATAAATGGATTGAGT
GAAACTCTGCCTGTCCAACTNATGCCTGGTATCGTGCAAGATTCAGTTGT
TTCATCAGAACAAAATTCGCCAGACCCTGTTGGAAAAAAGAAACTTGAAG
TTGATTCTTCTCTATTGAAAGATGACCAGGAAACTTCTTCAAATGGTGCT
GAAAAAGCTGAAGAAAACATTGACACAAGTGAAACAAAAAAAGAGGCTGA
AAAGCCAACAACAGAATCTACAGATAAGCCAACAACAGAATCTACAGATA
AGCCAGAAGTACCAATGAAGCTGTTGGATTTGAAGGTATCAATAAATGGA
TTGAGTGAAACTCTGCCTGTCCAACTNATGCCTGGTATCGTGCAAGATTC
AGTTGTTTCATCAGAACAAAATTCGCCAGACCCTGTTGGAAAAAAGAAAC
TTGAAGTTGATTCTTCTCTATTGAAAGATGACCAGGAAACTTCTTCAAAT
GGTGCTGAAAAAGCTGAAGAAAACATTGACACAAGTGAAACAAAAAAAGA
GGCTGAAAAGCCAACAACAGAATCTACAGATAAGCCAACAACAGAATCTA
CAGATAAGCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013990XLOC_013990Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024899-proteinTCONS_00024899-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024899-exon-sc0000512-1575043694:240323..240585TCONS_00024899-exon-sc0000512-1575043694:240323..240585Clytia hemisphaericaexon
TCONS_00024899-exon-sc0000512-1575043694:239817..239887TCONS_00024899-exon-sc0000512-1575043694:239817..239887Clytia hemisphaericaexon
TCONS_00024899-exon-sc0000512-1510915933:240323..240585TCONS_00024899-exon-sc0000512-1510915933:240323..240585Clytia hemisphaericaexon
TCONS_00024899-exon-sc0000512-1510915933:239817..239887TCONS_00024899-exon-sc0000512-1510915933:239817..239887Clytia hemisphaericaexon
TCONS_00024899-exon-sc0000512-1491911889:240323..240585TCONS_00024899-exon-sc0000512-1491911889:240323..240585Clytia hemisphaericaexon
TCONS_00024899-exon-sc0000512-1491911889:239817..239887TCONS_00024899-exon-sc0000512-1491911889:239817..239887Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000512supercontigsc0000512:239817..240585 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.32155	6.43129	10.1618	3.97914	32.4975	32.5224	45.5775	49.8835	16.9137	25.4709	47.239	21.5602	46.8126	51.4165	35.9231	40.7096	53.4603	68.2304	10.1733	14.9617	64.2739	82.8791	30.3541	36.1994	39.837	45.1549	20.6871	30.2925	27.0058	26.3372
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024899 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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