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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024897 ID=TCONS_00024897|Name=TCONS_00024897|organism=Clytia hemisphaerica|type=transcript|length=2385bpRun BLAST on NCBI protein sequence of TCONS_00024897-protein >TCONS_00024897-protein ID=TCONS_00024897-protein|Name=TCONS_00024897-protein|organism=Clytia hemisphaerica|type=polypeptide|length=376bp MSFGNGTTTFFTPTTILSPMTTLNTITPNVVTKTSNQRLLIGVVLAIIGNRun BLAST on NCBI transcript from alignment at sc0000512:199198..223463- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024897 ID=TCONS_00024897|Name=TCONS_00024897|organism=Clytia hemisphaerica|type=transcript|length=24266bp|location=Sequence derived from alignment at sc0000512:199198..223463- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000512:199198..223463- >TCONS_00024897 ID=TCONS_00024897|Name=TCONS_00024897|organism=Clytia hemisphaerica|type=CDS|length=13572bp|location=Sequence derived from alignment at sc0000512:199198..223463- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00024897 vs. Swiss-Prot (Human)
Match: NPAL2 (NIPA-like protein 2 OS=Homo sapiens GN=NIPAL2 PE=2 SV=1) HSP 1 Score: 221.09 bits (562), Expect = 4.117e-64 Identity = 143/291 (49.14%), Postives = 202/291 (69.42%), Query Frame = 2
Query: 293 NQRLLIGVVLAIIGNLLISVSMNVQKYSHTML--KESNKSYVKSPTWWCGIILMVIGEVGNFTAYAFAPASLVAPLGXXXXXXXXXXXXXFLKETVRYQDFLGITLAIVGAFLLINFSKKNETILNAEEIMEYAKHLPFILYLVLEISVFILLVYFHHKFNAGRVVTVLLQVAILGSFTVIXXXXXXXXXXXXFQGDNQFKYPIFYLMLLIMVVTAVGQVRFLNQAMASHDXXXXXXXXXXXXXMSAILSGIVFYREFYGLKFLEIFMFLFGAVLSFIGVYFITGDREKDE 1159
NQ L GV+LAI+GNL+IS+S+N+QKYSH L +E + Y KS WW G++LM +GE GNF AY FAP +L+APLG +V +A+I+V FLK+ +R D LG TLA G +LL+NF+ ++A + Y F++Y++LEI +F +L+YF+ + +V +L VAIL S TVIS KAVS M++ S Q YPIFY+M +IM+ + V QV+FLNQA ++TT VVP N +FFT+SAI++GI+FY+EF G FL +F++LFG LSF+GV+ +T +REK+
Sbjct: 44 NQIHLFGVLLAILGNLVISISLNIQKYSHLQLAQQEHPRPYFKSVLWWGGVLLMAVGETGNFAAYGFAPITLIAPLGCVSVTGSAIISVTFLKDNLRASDLLGTTLAFAGTYLLVNFAPNITQAISARTVQYYLVGWQFLIYVILEILIFCILLYFYKRKGMKHMVILLTLVAILASLTVISVKAVSGMITFSVMDKMQLTYPIFYIMFIIMIASCVFQVKFLNQATKLYNTTTVVPVNHIFFTISAIIAGIIFYQEFLGAPFLTVFIYLFGCFLSFLGVFLVTRNREKEH 334 The following BLAST results are available for this feature:
BLAST of TCONS_00024897 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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