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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024882 ID=TCONS_00024882|Name=TCONS_00024882|organism=Clytia hemisphaerica|type=transcript|length=3662bpRun BLAST on NCBI transcript from alignment at sc0000512:103573..117306- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024882 ID=TCONS_00024882|Name=TCONS_00024882|organism=Clytia hemisphaerica|type=transcript|length=13734bp|location=Sequence derived from alignment at sc0000512:103573..117306- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00024882 vs. Swiss-Prot (Human)
Match: VLDLR (Very low-density lipoprotein receptor OS=Homo sapiens GN=VLDLR PE=1 SV=1) HSP 1 Score: 535.413 bits (1378), Expect = 5.200e-172 Identity = 299/743 (40.24%), Postives = 414/743 (55.72%), Query Frame = 1
Query: 532 AGVAENCQTATCNPNTEFQCVTSGRCLPTKWRCDNENDCADKSDESNCPKKTCASNFFQCNNTRCIPKKWVCDETDDCGDKSDEH--------CTTQPKTCQSY----------------------------------QFTCADGSCISKTWKCDGDNDCPDGSDESQCEKANTTCASNEFQCG-RQCLPMAWRCDGNKDCHPNGEDEI-NCQTTPAPKT-CPSDKWQCKSGACISKVWRCDGENDCVDQSDEENCDKITCSPDKFACADKKQCVFNSRRCDGTQDCMDGTDEKDCPKPRVSCTGDHFNCSDGTCIEASKVCDGNNDCTKGEDEPV-NCFINECLTHRGHCMHDCEDLKIGFQCKCKPGYKLMADLKSCEDIDECTLHGFCHQKCENTKGSFKCSCSNGFQLEPDRRTCKVQNGEPTVYFSNRQDIRSVSLAGNNYSIAISRLKGVISFDFDIKNEYIYMADAIDETIKRAKI-NKPSSVETILSNVHTPDGIAVDWITGKLYWTDTGYKTIEVADIDGKHNADLIKVGLYEPRAIAVDPHTGFLYWSDWGEESSAIERMSMDGDLSTRKKIVTDNIKWPNGLTLDLVQQKLYWIDAKLRRLEVADFEGNNRQLLVDS--GIAHPFALDNFNDQLFWTDWRMDGVKSMNKFNSSQISTLKSQLIAPMGIKVYHPSRQLRGENPCGSD--NNGCSHLCLLANKQGKRS--ISCVCPRNMTLQEDGKTCAGKQPT 2601
+G + A C P ++FQC T+GRC+ W+CD + DC D SDE NC KKTCA + F CNN +C+P +W CD DC D SDE C +C ++ +FTC+ G CIS+ + C+G +DC DGSDE C A TC ++EFQC C+P++W CD + DC ++ + C P T CP+ + QC SG CI K WRCDG+ DC D SDE NC TC PD+F C D C+ SR+C+G +DC+DG+DE +C F C G CI+ SKVC+ DC DEP+ C INECL + G C H C+DL IG++C C G++L+ D K+C DIDEC G C Q C N KG +KC CS G+Q++ CK EP++ F+NR+DIR + L Y + +L+ ++ D DI + ++ AD + I A I +K ++ NV+ P IAVDW+ +YWTD KTI VA +DG L L EP +IAVDP +GF+YWSDWGE + IE+ M+G R+ +VT +I+WPNG+TLDL++ +LYW+D+KL L D G +R++++ S +AHP AL F D+++W D + V NKF S+++TL + L I VYH Q G+N C D N GC +LCL A + S +C CP ++E+G+ C T
Sbjct: 22 SGATGTGRKAKCEP-SQFQC-TNGRCITLLWKCDGDEDCVDGSDEKNCVKKTCAESDFVCNNGQCVPSRWKCDGDPDCEDGSDESPEQCHMRTCRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCGNITCSPDEFTCSSGRCISRNFVCNGQDDCSDGSDELDC--APPTCGAHEFQCSTSSCIPISWVCDDDADCSDQSDESLEQCGRQPVIHTKCPASEIQCGSGECIHKKWRCDGDPDCKDGSDEVNCPSRTCRPDQFECEDGS-CIHGSRQCNGIRDCVDGSDEVNCKNVNQCLGPGKFKCRSGECIDISKVCNQEQDCRDWSDEPLKECHINECLVNNGGCSHICKDLVIGYECDCAAGFELI-DRKTCGDIDECQNPGICSQICINLKGGYKCECSRGYQMDLATGVCKAVGKEPSLIFTNRRDIRKIGLERKEYIQLVEQLRNTVALDADIAAQKLFWADLSQKAIFSASIDDKVGRHVKMIDNVYNPAAIAVDWVYKTIYWTDAASKTISVATLDGTKRKFLFNSDLREPASIAVDPLSGFVYWSDWGEPAK-IEKAGMNG--FDRRPLVTADIQWPNGITLDLIKSRLYWLDSKLHMLSSVDLNGQDRRIVLKSLEFLAHPLALTIFEDRVYWIDGENEAVYGANKFTGSELATLVNNLNDAQDIIVYHELVQPSGKNWCEEDMENGGCEYLCLPAPQINDHSPKYTCSCPSGYNVEENGRDCQSTATT 755 The following BLAST results are available for this feature:
BLAST of TCONS_00024882 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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