TCONS_00024877 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024877
Unique NameTCONS_00024877
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1087

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024877 ID=TCONS_00024877|Name=TCONS_00024877|organism=Clytia hemisphaerica|type=transcript|length=1087bp
TAAGTCCTCAAAAATCAACCATGCTTTTCCAGAAATCACTATTAATGAAT
CAAAAACAATATCTGGTGCTAGATCAAATAAGgcgtttttatttcaaagt
ccaTCACATAGTACTTTCTCAGAAAGGAGGAGCAGACCTCAACAGATGTT
GCATCAGAAAAGTAAATCAGCGCCACACATCAATTTTTTCCGATCAAACA
TTACCAATGTTGACCATAAAGAAGCTTCGCAGGTTGTTGAGGATCAAGTA
TTCAAATCTTTGTCAGCTGGATTACAAATTGAACGAAGACACTTGCAAAA
GATTTCTCCCAAAGATTTATCACCAAgAGTGAACAAAAGTCACTCAGATG
GATTCCTTCCAAAACTTGAAGATGTACaagtttctttaaaatcttACAAA
AGTTATGATGAGCAGCTATCATGTCTATTCTCTTGGTTTTCCACATGGAC
TGAATGGCAAAAAGAATTGTTTTTGGGGAACCTGCTCAAGTTGTTAAATT
CGCCGCAATTATACTTCCTCTATGCCTCCATCATGATATCACTTTACAGA
GATTTTATATCATTGCTGCcacaaaaaatatcttttaaaatacTAAGCTA
TTTACAtccaaaaaacttaaaacaatGTGCAAAGGTTTGTGAAAAATGGA
AACTTTTTTGCGAACATGATACCATTTGGAAGCCGATATGTGTCCGAAAG
AACATCAGTAGAGCTATCGAAGTTTCAAAGTATATTGAGAAGTTTTATGC
GTACAAAGTGGTGAAGAACAATTGGTTAGatggaaaattcaaaatcaaag
atcTTTCTAGCCCATCTGGAAGAAATCTCAAGAACGATGTTTCAGAGATG
AAAAGGTGAACATGTGTGGGTGTTATCATAAAGGAAAAAAGGCAGAGCCA
GAGGGCTTATCTTGTTGGGTACCAGTGAAATTCTAAATTAACTGGGCACC
TTTATTATTTTGATCTGTTTGTGagaccatgaacatataaacgactggac
atccatctcctttgtttttttaaagataacactgctagcttcgttgccgc
cttgttaaaagcataaaatgaaacaataaattttgat
Run BLAST on NCBI

transcript from alignment at sc0000512:77428..81953-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024877 ID=TCONS_00024877|Name=TCONS_00024877|organism=Clytia hemisphaerica|type=transcript|length=4526bp|location=Sequence derived from alignment at sc0000512:77428..81953- (Clytia hemisphaerica)
TAAGTCCTCAAAAATCAACCATGCTTTTCCAGAAATCACTATTAATGAAT
CAAAAACAATATCTGGTGCTAGATCAAATAAGGCGTTTTTATTTCAAAGT
CCATCACATAGTACTTTCTCAGAAAGGAGGAGCAGACCTCAACAGATGTT
GCATCAGAAAAGTAAATCAGCGCCACACATCAATTTTTTCCGATCAAACA
TTACCAATGTTGACCATAAAGAAGCTTCGCAGGTTGTTGAGGATCAAGTA
TTCAAATCTTTGTCAGCTGGATTACAAATTGAACGAAGACACTTGCAAAA
GATTTCTCCCAAAGATTTATCACCAAGGTTTTTGTTCTTTTCATTTGCTT
GATTAGGACTCTAAATGTGTTTTTTCATGAATTGGTCTACAAATTTTGAT
CAATGCAAAAATAACAACAAGTTTAATGCAATCTGAAACTGTCCCAATTG
ATATTTTTTTGGCTTTTTCAGTTTTTAACTGATTTTTTAAATCATAAGCT
TTTCCATTTTCTTGTTAGAGTGAACAAAAGTCACTCAGATGGATTCCTTC
CAAAACTTGAAGATGTACAAGTTTCTTTAAAAGTAAGTGACTTTGAAATT
TTTTCTTAGATATGTAATTTCAGTTTTGAGTTGCTCGCTTTGCTTTACAA
AGGGATTTTATTTGAAACAGTTGTAAGGAAGAATCACATGGAGCAGAATT
ATTTCTTAACAAATGTTTTTTTTTTCATTATTCTAACTAATTTTGACCCA
TTTTTGGACCTACCTTGAGGTTAGATTTTTGAAAGAAAAAAAATTTTCTT
ACCGAAAATACCGGAAATATGCTGCAAAAACCGGGGTTTTGGCATTTTTT
CGAGATTTCATCGTTATTTTTTTTCTCGATTTTTTGTAGATAGATGTGAA
TTAGCAATGTCTAAAACATAACCTAGTCCAATTTTAGAGGAAAACTTTTT
CCCGGTCGAAAATCGCCGTTTTTTGCGATTTTCATTGGGTCTTTTTCTTG
ATAAATAATTCTTGCTTTTTTTTATACACAAGCATTATTGATAACGATAC
CCACGATTAAGCATGATTCAATTGTCATACCAGAAAAACGGTTTTCCTTG
AATCTCTCGAGCTGTAGTCGACATTTTTTCATGAAATTTTGCACACTGTT
GCAAAATGGCAATGCCTAAAATGTGACAGAGCCCAATTTTCAAAAATGCC
AGTAGTATCCAGGAAAAACTGGTTCTTTGGCAGTTTCTCGTGATTTCATC
ATTTTTCTGATATTATTTATCATTTGTTAAGGCCGGCGCAAATGAATCCA
ACATCTGATCCAACATTATTGTTGGATCAAATGTTGGGTTCATTTGTGCA
AGTCATAAAATTGCAACTTTTTAAGAAAATTGTTGGAAATCATGCTGGAT
GAAGTTTGATCGCTATCAAACTTTTCATCCAACATTTTTTATGAGATTAA
CGTCACTTTTATGTTGGTTTCAATGTTGGATGCATTTACGTAATCATGTT
GGATGAAAATGTTTGACGTTTTTGCGCAAATGACTTTTCATGCAACTTTT
CGAATTTTTCCACGTGTCTTTTCGTCCAACATTTTGTCCAACAATGAATT
GGAAATGTTGGATTGAATGTTGGATTCATTTGCGCCGGCCTTTACCTTCA
TTTTCTTTTTCCCTAGGCTACCATTCATTTTATTGAAGTGACCTTGGTTA
AAAATTGTTTGATAAACGCCCTCTTCTTTTAAATGCCCCGCCCCCCTGAG
CGAACGCCCCTCTTGAGAAACAAAAAATCTAATTAACCTATATATATAAA
TTTACATAGATTAATTAATTAGATTTTTTTTTCAGTCTTACAAAAGTTAT
GATGAGCAGCTATCATGTCTATTCTCTTGGTTTTCCACATGGACTGGTAT
GTTAGATTTTTTCAATTTCAATAATTCTCAAACATTATGCGAATTAGAAT
TGTCTTATGATTAAAGAGGTTCTTATTTTTTTCCAATTCCATTGATAATT
ATTTTTTCAAATTTTGATGAAAATCTCATTAAAAATTGTTTTGTCTAAGA
AAAAGATTTTCAAATCTCGTAACTGCTCGTAATAGTATGTTGATTTTATA
TATATCCTTTCTTTTAGAATGGCAAAAAGAATTGTTTTTGGGGAACCTGC
TCAAGTTGTTAAATTCGCCGCAATTATACTTCCTCTATGCCTCCATCATG
GTATATTTTTGTCAAAATTCTGAAAATGAATTACAAAGAAGCTCATAGAT
TGGCTTATAAAAAACATATGCAATATTAAACAGATATTCGACAAGTAAAA
TGGGATATGCTGTATATCCGATACAAAGCCCTAAAATCGAATCTCTTAGG
TAGAAATTTCCCGTTGTCACCTTGAAAATAGTGGTAAAGATACTGGAATG
TTTATAATTTTCACCCTGAACATCGTCCAAAATAAGCAAAAGTCGACCCT
GCCAGATAGACATTTTGAAAATTAGTTTATTTAGGACCCTGGCCAGCGGC
ACTTCACCGTACCTAATTTTGCCTAAGTACCTCCCCCAGAGAGATACTCG
CTATCAGATATTTAAAAATATCCGACAGTGTGTTTTGCTTAGATGTCGTT
GGTTATTCTATTATGTTATAACTAATAACACTTAATCAGTCGAAACCGGA
ATTTCGCCTTTCCAATAAGACTTCTCGAAATTTTCAAACGTGAAGAAGTG
TGCCTTGAAGGAAAAACTAATGTTTATCTTGTGTGCGTAGAAATTCTTTA
CTTTGATTTCAGATATCACTTTACAGAGATTTTATATCATTGCTGCCACA
AAAAATATCTTTTAAAATACTAAGCTATTTACATCCAAAAAACTTAAAAC
AATGTGCAAAGGTATTTATTTCATTAGAATTTTAATTAAAAAATGAAATA
AGTAATTTCTAAAAGGTCCAAAAATATAACTGTCGATATGTTGAAATAGT
TATTTTTTGAAATATCTTTATCATTATAATTATATGTACAATCAACAATT
TTCTATTATATATTGTTGTATAAATTATCAGAACTGTCAAAGTGACAGTT
TATTATCCACAGCAAAACGAATTTTCAGGGCGGGTCTGTAAAACACACGA
ACATATTCCAGTCCGCAGAGGAAAATATGTTCCCACATTTTGTCTTTTTG
ATTTTAATATTTCTAGGTTTGTGAAAAATGGAAACTTTTTTGCGAACATG
ATACCATTTGGAAGCCGATATGTGTCCGAAAGAACATCAGTAGAGGTTCA
TTTCTTAATTTCTTCTATTTATCACAACCTTGATCATACTTTGTTTTTTT
TCAATTTTTAGTAGAATAAAACTTAACGTGGACTCAAAAAATTTGGACCA
AACTAAATTAGGGAGAGGAACTCGAGAGAGAGAATAAAAGGCACCAATAT
TTGCTAATAAACGACAGTCTCTTAATGACCAAATTGAGACAACAACTTTT
TAAAAATGAAATCACCTAGACATAAATGTAACAATACAATGGCCACTGAT
GGGAATTCTAATTTTCAGCTTTTTTAATTCTTTTGACCGATCTTACTTGC
ATACTGTAGCATTTTTTTGGAAAATTGTTAAAAATTACCAATCTATCGAA
ATCTGATTATATTTACACAAAAAATGCTTTTTGAAGTATTTTCATTATTT
ACTCGTTTAATAAATAACTCAAGTTAAAAGCTTTTCTTTCAATATATTGT
ACATTTATTTTGGTATTCATTTTTACGTGTTTATTCATACTTTTTGAAAA
GTGAATTTTGACTTCAAAAGCTTATAACTTGAGAAATATATGCCTGTGAA
ACTAGAATTGATGTGAATTATGAAAATACACCTCTTTTAAAGCTATCGAA
GTTTCAAAGTATATTGAGAAGTTTTATGCGTACAAAGTGGTGAAGAACAA
TTGGTTAGATGGAAAATTCAAAATCAAAGATCTTTCTAGCCCATCTGGAA
GGTATGTTTTATGATTAAATTCTTATTTTGCACTCACTTATCTTTACTTA
TTCCATAGTAGTACGGAATTTGCGCTCCATTTTTATTATTTCGGCCTTTT
ACAACAGTCTGGTGCGAGAGGCCATCCCTACGTGGCTCAAAATTCTTATG
ACGAAAAACTGTTTGCTGAATTCTCTCCAATGACTTCAACAACGGATTAG
AACGCCAGGGAAATCTTTGCACAGTTTTCTGTGTTNATGACTTCAACAAC
GGATTAGAACGCCAGGGAAATCCTTGCACAGTTTTCTGTGTTTGTATTTT
AATTGGTTTAGAAATCTCAAGAACGATGTTTCAGAGATGAAAAGGTGAAC
ATGTGTGGGTGTTATCATAAAGGAAAAAAGGCAGAGCCAGAGGGCTTATC
TTGTTGGGTACCAGTGAAATTCTAAATTAACTGGGCACCTTTATTATTTT
GATCTGTTTGTGAGACCATGAACATATAAACGACTGGACATCCATCTCCT
TTGTTTTTTTAAAGATAACACTGCTAGCTTCGTTGCCGCCTTGTTAAAAG
CATAAAATGAAACAATAAATTTTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013984XLOC_013984Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024877-exon-sc0000512-1575043694:81627..81953TCONS_00024877-exon-sc0000512-1575043694:81627..81953Clytia hemisphaericaexon
TCONS_00024877-exon-sc0000512-1575043694:81372..81435TCONS_00024877-exon-sc0000512-1575043694:81372..81435Clytia hemisphaericaexon
TCONS_00024877-exon-sc0000512-1575043694:80058..80118TCONS_00024877-exon-sc0000512-1575043694:80058..80118Clytia hemisphaericaexon
TCONS_00024877-exon-sc0000512-1575043694:79754..79836TCONS_00024877-exon-sc0000512-1575043694:79754..79836Clytia hemisphaericaexon
TCONS_00024877-exon-sc0000512-1575043694:79093..79191TCONS_00024877-exon-sc0000512-1575043694:79093..79191Clytia hemisphaericaexon
TCONS_00024877-exon-sc0000512-1575043694:78709..78787TCONS_00024877-exon-sc0000512-1575043694:78709..78787Clytia hemisphaericaexon
TCONS_00024877-exon-sc0000512-1575043694:78003..78111TCONS_00024877-exon-sc0000512-1575043694:78003..78111Clytia hemisphaericaexon
TCONS_00024877-exon-sc0000512-1575043694:77428..77692TCONS_00024877-exon-sc0000512-1575043694:77428..77692Clytia hemisphaericaexon
TCONS_00024877-exon-sc0000512-1510915933:81627..81953TCONS_00024877-exon-sc0000512-1510915933:81627..81953Clytia hemisphaericaexon
TCONS_00024877-exon-sc0000512-1510915933:81372..81435TCONS_00024877-exon-sc0000512-1510915933:81372..81435Clytia hemisphaericaexon
TCONS_00024877-exon-sc0000512-1510915933:80058..80118TCONS_00024877-exon-sc0000512-1510915933:80058..80118Clytia hemisphaericaexon
TCONS_00024877-exon-sc0000512-1510915933:79754..79836TCONS_00024877-exon-sc0000512-1510915933:79754..79836Clytia hemisphaericaexon
TCONS_00024877-exon-sc0000512-1510915933:79093..79191TCONS_00024877-exon-sc0000512-1510915933:79093..79191Clytia hemisphaericaexon
TCONS_00024877-exon-sc0000512-1510915933:78709..78787TCONS_00024877-exon-sc0000512-1510915933:78709..78787Clytia hemisphaericaexon
TCONS_00024877-exon-sc0000512-1510915933:78003..78111TCONS_00024877-exon-sc0000512-1510915933:78003..78111Clytia hemisphaericaexon
TCONS_00024877-exon-sc0000512-1510915933:77428..77692TCONS_00024877-exon-sc0000512-1510915933:77428..77692Clytia hemisphaericaexon
TCONS_00024877-exon-sc0000512-1491911889:81627..81953TCONS_00024877-exon-sc0000512-1491911889:81627..81953Clytia hemisphaericaexon
TCONS_00024877-exon-sc0000512-1491911889:81372..81435TCONS_00024877-exon-sc0000512-1491911889:81372..81435Clytia hemisphaericaexon
TCONS_00024877-exon-sc0000512-1491911889:80058..80118TCONS_00024877-exon-sc0000512-1491911889:80058..80118Clytia hemisphaericaexon
TCONS_00024877-exon-sc0000512-1491911889:79754..79836TCONS_00024877-exon-sc0000512-1491911889:79754..79836Clytia hemisphaericaexon
TCONS_00024877-exon-sc0000512-1491911889:79093..79191TCONS_00024877-exon-sc0000512-1491911889:79093..79191Clytia hemisphaericaexon
TCONS_00024877-exon-sc0000512-1491911889:78709..78787TCONS_00024877-exon-sc0000512-1491911889:78709..78787Clytia hemisphaericaexon
TCONS_00024877-exon-sc0000512-1491911889:78003..78111TCONS_00024877-exon-sc0000512-1491911889:78003..78111Clytia hemisphaericaexon
TCONS_00024877-exon-sc0000512-1491911889:77428..77692TCONS_00024877-exon-sc0000512-1491911889:77428..77692Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000512supercontigsc0000512:77428..81953 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.07629e-08	2.11641e-08	0.0158632	0	0	0	0	0	2.02714e-08	2.88556e-08	0	0	1.56571e-08	0	0	0	0.000220008	0	0.339421	0	0	0.00522712	2.04967e-08	0	0.000750749	4.21468e-05	0	8.36876e-09	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024877 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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