TCONS_00024852 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024852
Unique NameTCONS_00024852
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length837

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024852 ID=TCONS_00024852|Name=TCONS_00024852|organism=Clytia hemisphaerica|type=transcript|length=837bp
GTAACAGGCTAGTTATAACCAATGGCATGTTGAAATTTATTCATTAGcga
attatattttttgttcattgcATTGATCTGTCTAAGGGTTTTNTAATTTA
TTCATTGGcgtattatattttttgttcattgtATTGGTAATTCTATCAAT
AGTATCatTTGGGCAAGATATACGACGGTATTAATCAACGATAAAATTGA
TCTGTCTAAGGGTTTTTGAATTAGCATAAGTTTATGTTTATAAGGTAGGT
TTGCTTGATGTGattatttggtgtaataaaatGTATGATTATTTGATCCT
ATGTGTAGTGGCATGCGACTTGATTTTGAGGGATGGGAGTGGCAGATAGA
ATGGCGGGGCTCAAACATAAACCCCTAATTGCATGTTCGTTCTATTTTAA
GAGTTTATACCATAAAAACATATATCTATTCAATAAAGAAATGGCACCTA
TCAGCGGAGTTACACCTCTTTCATCAAGTACTGGTCAACAACTACTGAGC
ACAACATCTCACCAAGCACGATATTTTATCCAAAACTATCAACAAAATTC
CAATCTGCCTTCACATTTATCTGGTCCTGCAGCAGTCTTGATTTTCATGA
ATACTTTCAACATGGCTTTTAACTTCAAATTGGGCCAATACCCACCAAAT
TCGCCAGAAATTGTGGATTTGATGGGTAAGGTAAATAGAGGCGTCCAACT
TAAGTTAACAATGAATGATATTGTAAACCCGAATATGATTACTGGAGATT
TGTCAATGTCAAAAGTCGCTAAAATCGCTGAAAATACTAAATTACTGAAT
GAACGAATCTGGTATACACAGACTCAACTTGATAAAC
Run BLAST on NCBI

protein sequence of TCONS_00024852-protein

>TCONS_00024852-protein ID=TCONS_00024852-protein|Name=TCONS_00024852-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
MGVADRMAGLKHKPLIACSFYFKSLYHKNIYLFNKEMAPISGVTPLSSST
GQQLLSTTSHQARYFIQNYQQNSNLPSHLSGPAAVLIFMNTFNMAFNFKL
GQYPPNSPEIVDLMGKVNRGVQLKLTMNDIVNPNMITGDLSMSKVAKIAE
NTKLLNERIWYTQTQLDK
Run BLAST on NCBI

transcript from alignment at sc0000512:18683..19624+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024852 ID=TCONS_00024852|Name=TCONS_00024852|organism=Clytia hemisphaerica|type=transcript|length=942bp|location=Sequence derived from alignment at sc0000512:18683..19624+ (Clytia hemisphaerica)
GTAACAGGCTAGTTATAACCAATGGCATGTTGAAATTTATTCATTAGcga
attatattttttgttcattgcATTGATCTGTCTAAGGGTTTTNTAATTTA
TTCATTGGcgtattatattttttgttcattgtATTGGTAATTCTATCAAT
AGTATCATTTGggctactctgtaccagagtgtatctcacgattatcgtag
cgtagttctacggcaatgaattttgaaattagccgtagatatgggtttgt
gtacagacaacatTTGGGCAAGATATACGACGGTATTAATCAACGATAAA
ATTGATCTGTCTAAGGGTTTTTGAATTAGCATAAGTTTATGTTTATAAGG
TAGGTTTGCTTGATGTGattatttggtgtaataaaatGTATGATTATTTG
ATCCTATGTGTAGTGGCATGCGACTTGATTTTGAGGGATGGGAGTGGCAG
ATAGAATGGCGGGGCTCAAACATAAACCCCTAATTGCATGTTCGTTCTAT
TTTAAGAGTTTATACCATAAAAACATATATCTATTCAATAAAGAAATGGC
ACCTATCAGCGGAGTTACACCTCTTTCATCAAGTACTGGTCAACAACTAC
TGAGCACAACATCTCACCAAGCACGATATTTTATCCAAAACTATCAACAA
AATTCCAATCTGCCTTCACATTTATCTGGTCCTGCAGCAGTCTTGATTTT
CATGAATACTTTCAACATGGCTTTTAACTTCAAATTGGGCCAATACCCAC
CAAATTCGCCAGAAATTGTGGATTTGATGGGTAAGGTAAATAGAGGCGTC
CAACTTAAGTTAACAATGAATGATATTGTAAACCCGAATATGATTACTGG
AGATTTGTCAATGTCAAAAGTCGCTAAAATCGCTGAAAATACTAAATTAC
TGAATGAACGAATCTGGTATACACAGACTCAACTTGATAAAC

Coding sequence (CDS) from alignment at sc0000512:18683..19624+

>TCONS_00024852 ID=TCONS_00024852|Name=TCONS_00024852|organism=Clytia hemisphaerica|type=CDS|length=504bp|location=Sequence derived from alignment at sc0000512:18683..19624+ (Clytia hemisphaerica)
ATGGGAGTGGCAGATAGAATGGCGGGGCTCAAACATAAACCCCTAATTGC
ATGTTCGTTCTATTTTAAGAGTTTATACCATAAAAACATATATCTATTCA
ATAAAGAAATGGCACCTATCAGCGGAGTTACACCTCTTTCATCAAGTACT
GGTCAACAACTACTGAGCACAACATCTCACCAAGCACGATATTTTATCCA
AAACTATCAACAAAATTCCAATCTGCCTTCACATTTATCTGGTCCTGCAG
CAGTCTTGATTTTCATGAATACTTTCAACATGGCTTTTAACTTCAAATTG
GGCCAATACCCACCAAATTCGCCAGAAATTGTGGATTTGATGGGTAAGGT
AAATAGAGGCGTCCAACTTAAGTTAACAATGAATGATATTGTAAACCCGA
ATATGATTACTGGAGATTTGTCAATGTCAAAAGTCGCTAAAATCGCTGAA
AATACTAAATTACTGAATGAACGAATCTGGTATACACAGACTCAACTTGA
TAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013975XLOC_013975Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024852-proteinTCONS_00024852-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024852-exon-sc0000512-1491911889:18683..18838TCONS_00024852-exon-sc0000512-1491911889:18683..18838Clytia hemisphaericaexon
TCONS_00024852-exon-sc0000512-1510915933:18683..18838TCONS_00024852-exon-sc0000512-1510915933:18683..18838Clytia hemisphaericaexon
TCONS_00024852-exon-sc0000512-1575043694:18683..18838TCONS_00024852-exon-sc0000512-1575043694:18683..18838Clytia hemisphaericaexon
TCONS_00024852-exon-sc0000512-1491911889:18944..19624TCONS_00024852-exon-sc0000512-1491911889:18944..19624Clytia hemisphaericaexon
TCONS_00024852-exon-sc0000512-1510915933:18944..19624TCONS_00024852-exon-sc0000512-1510915933:18944..19624Clytia hemisphaericaexon
TCONS_00024852-exon-sc0000512-1575043694:18944..19624TCONS_00024852-exon-sc0000512-1575043694:18944..19624Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000512supercontigsc0000512:18683..19624 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0639645	0	0	0.180605	0.145262	0.0679962	0.0476058	0	0.228941	0.0376242	5.71092	1.28762	2.18135	0.44753	0.0424092	5.21617	0.360321	0.188525	0	0.0799264	0	0	0.909814	1.02852	0	0	0.125406	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024852 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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