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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024833 ID=TCONS_00024833|Name=TCONS_00024833|organism=Clytia hemisphaerica|type=transcript|length=1909bp
atgcaagttacccactctcggTACATGTTTCAAGCAATCGAAAACTGTTT
CAGCAACCACCTAGGAAAAAACAGGAATTATAACTGTTACAATTTAAATT
TACCTCAAGAATAAAAGGATTTAGtattCTGTGTAGTACAAATAATATTC
CGTAACCATGGTTGTCGAAGACTTGACATTGTTATCTGATGATGCAAACT
ACCGTGATACTTTGCAGACCTATTTGAAATATATGGAGCAACTTCCGCCA
CAAAAGCTTTGGATGAAAGAAGAACTAGGCCCAAGAATCGCGAAGCTTTT
TGAAGCTAAGAAAGAGATCCGAGTCTTGGCTGTTGGTACCGGAACGGGTG
AAGTTGATGTTGATTTTCTTGCAGAAATCACAAAGCGCGGGCGTGAAGTA
CATGGAGAGGATTACAGCGTTGTGTATCAGGTAGTTGAGCCTAACCCTGA
ATCAGTGGAATACTTCAAAGGCGTCGTAACCAAGGACGATAATTTATCTA
AAGTCACTTTCCAGTGGTTTACCGGTTTCTTTGACCCGTTTTGTGAAGAA
TTCAAGAAAACAGCTAGCAAAGATACTAGGTTTGATTTCGCTCATTATGT
ACGATGTACGTACCATATTGATAGTGTTTCTGCCCTACAAGTGACGTACG
AACACTTGTTAAGAAAAAATGGAGTAGTCGCAGTTGTAGGTGAGAATGAG
AATGCTTTCTGGCCACGCATGATGCCTTTCTTAGCTAAACATGAAATGAA
GCATGAATGTTTCACATGTTCTGGCCCTGTTTCCGATGCTTATTTCCTAC
CTGGTTGGAAAAAGCAAGCGGAAACGAACGGCTGGAAGTTTGATGTCTgg
attaaaaaatataatttcaataTTACACTGATGTATGATCCAGAATCGAA
ACCAGGAAATTATTTGATCGACTTCGCGCTTCATGGTAAAAATTGTCGAC
AAACTATATCTAAAGTGGTTTTGGATGATTTCTTTGAGCTTTTAAACGCC
CATTCACATGAGGAAGAAGTTGAAGTTGAGGGCGTCAAAGAGAAACGCCG
CCATTATCCATGCGAGTTGGGCGCTATTATGATAACAAAGGAATAACAGC
TCTGTTTTCAATCTTACCTAAAACCATGATGGAAACCTGAATATCAAATC
AAACTGATCAATATTGCTCCGAATGATATTTTCATACTCAAATATACCTA
TGAAACTGGGGgtttttttagcatttgaatTCATACCCATGCCATACGTG
CTTATGGCTGGCTATCCAAAAGTTCGTTCAacatttaaatgaaacttgaa
ATGCAAATTACCAAACTTTTCGAGAAACGAACCAAGCTGGCAGCTCATAA
AAACAGAACTCCAGAATTCTGTTCCACCTTAGTTTtaattcattttgttt
ttgttaaattgTTCCAGTGCTAAGGCTATGAGACAATATAATggtctgat
tttaaaaatattttgataattttgattcttaGTAAGTATTTTTGTGATTA
AAATGAAAGTAAGGTATCATTATTTACAAAGCTTTTGAATATTATCTTTA
TCTCTTCCAACTTTCACCAAAAAAGGCATCGATGGACTTAAAGGGACTGA
TTTTGCGTTTTGCAACCTTACCTTGGACTGACATAAGAAACTGTTCAGTA
GACTAGAGTCTATTTTTGACTCAAGTTTGCGGAAGTACCAGTGCCATGGG
GCTAACTGTTTTACAAGCACCGTGTTTAGgtaactttttaaacttttgtg
cGTGGACTATGAAAAAGGTTTTTGTAACAAATATGCAatctttttttggg
ttttaTCAGTAcctaaaaatctcaaaacacaaaataatcaatttgtgctt
tatcattttgaaagatcatcataatattttgaaagcatttcaaaagattt
tcttcaaaa Run BLAST on NCBI protein sequence of TCONS_00024833-protein >TCONS_00024833-protein ID=TCONS_00024833-protein|Name=TCONS_00024833-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp
MVVEDLTLLSDDANYRDTLQTYLKYMEQLPPQKLWMKEELGPRIAKLFEA
KKEIRVLAVGTGTGEVDVDFLAEITKRGREVHGEDYSVVYQVVEPNPESV
EYFKGVVTKDDNLSKVTFQWFTGFFDPFCEEFKKTASKDTRFDFAHYVRC
TYHIDSVSALQVTYEHLLRKNGVVAVVGENENAFWPRMMPFLAKHEMKHE
CFTCSGPVSDAYFLPGWKKQAETNGWKFDVWIKKYNFNITLMYDPESKPG
NYLIDFALHGKNCRQTISKVVLDDFFELLNAHSHEEEVEVEGVKEKRRHY
PCELGAIMITKE Run BLAST on NCBI transcript from alignment at sc0000511:196276..200123- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024833 ID=TCONS_00024833|Name=TCONS_00024833|organism=Clytia hemisphaerica|type=transcript|length=3848bp|location=Sequence derived from alignment at sc0000511:196276..200123- (Clytia hemisphaerica)
ATGCAAGTTACCCACTCTCGGTACATGTTTCAAGCAATCGAAAACTGTTT
CAGCAACCACCTAGGAAAAAACAGGAATTATAACTGTTACAATTTAAATT
TACCTCAAGAATAAAAGGATTTAGGTACATGTATCTGAAGTATTGAGTAT
CAGGCTTTTTTTTTTGAAAATTGTCCCTTAGAGCCATTAAAGAATTAAAT
CATCAGAAAAAAAACCCTTCTCACAAACCGGGTAGGATCTTTTTAGCCAG
TGAAGGTAAAAAACGGACTGAAACTCGATGTGGATTGATGTTCCCATATT
TTTATGACCGGTTCATAGTCAGAAAATTCAGTGGGGATGAGAAAACTAGC
ATGATATTTTGTGGTGAGGATTGGTTTATTTCATTATTTTCAGTGGGGAC
AAAAATTGGAGGATGATTTTCCACCGGGGACGATATCTTGGCAAAATGTT
CTAGTGGAAAGAGTTGGTCTGTGAGAAGGGGGTGTAGACAATAAGCATCT
CTAGACTCCCTCAAGATTCACTTGAGCTCGAACAAAGTTAGTTACCTTAA
AGTCAGAAAAACTGTTATAAAAGAGCTTCTACTCGAACTTCGGTCCCAAT
TTTGATTTTTCATTTTTAGTATTCTGTGTAGTACAAATAATATTCCGTAA
CCATGGTTGTCGAAGACTTGACATTGTTATCTGATGATGCAAACTACCGT
GATACTTTGCAGACCTATTTGAAATATATGGAGCAACTTCCGCCACAAAA
GCTTTGGATGAAAGAAGAACTAGGCCCAAGAATCGCGTAAGTTTAACACA
AGTTTATTTGACCCCCGTTTGACCTTCTAACCAGGTGATTTCAGTGCAGT
ATGGGTCAGAAAAACTCCTTACCGATAATGGACTTCTATAAATATACATT
TTAAACAGAACAATAATATAAGAAGAAAACTAATAAAGTGATAAAGAAAT
GAAATTAACAAAGAAAAATAATTTGTGTTGCAATTTTGCGATTACTTTTT
AAACTTGAAGAGCTTTCCATCATAACCCTAGGAACACATTTAAGATTGTT
TATATGAGAATATTTTACGCATATTCAATGTACTAGACTTTAAAGCGTTT
GGGTTTTATGTAATTTCACTGAAAACTGTTGAAAAATTGAATGGGTCGTT
TGATACACGTATTCGCTAGCAAAGATATTTTTTTGTATTTGAGATTTTTT
TTGGAAAAAAATTCATTTTAGTTTGTTAATTTCGACAGGGCGATAAGCAT
TTCCTTTTTTTGACCAGGGTGACCTAAAAAGGATGATATTTGACAGGGCC
TCAACTATAAATTTCTAAAATTTGACCGGGTTCAAAATTTTGATTATTTT
TTGACCGGGGTTACCAATTTTCCACCGGGGTCAAAATTTGGCCTGTTTTT
AGGCATTTTTTTCACCGGGCTACTCACCGAGGTGGATCTGACCGGGCCAC
TGACTCAGGGATGTTTCCTTTATAAATCCATGGTTATACCAGTATGTAAC
TTTCAACTATTCAATTCGATGCTTATACTGATTACAGGAGTTCAATTGAA
AGTTCAAATGACTATAGCTTAGAATCGGCGAAGAAAAAAAATCAATCGAG
GGTCTAGTTTCCGAGTTTTGACATCCGCAAAATCTTCTTACGGCCACAGA
ATCGAGAAAGATCTTGACACAAAGTCGATAACGATTCAAGTGAGACCTAG
TACGATCTGTCATTGCATAAGGGAAAGAAAATTTAGTTTCAGAAATGTTA
TCCAAATTTCAGATTTAATCACCTTGCCGGAAAGGTTGCAGTCGAATCTT
AGTGCGGACAGTGGAATCTAAAATGGTTTTCGTAGGGGCACCCCTTAGAT
CAGGGCAAATTTTTGATACTATGCTCCTAATAGAGTGTAGAATTGACAAA
TCTCCTGCAGTTTTCGAGTGAATCGAGTTTTAGTTAATCGATACAACTTA
TCAAGGGTCCTCCCTCCATGCCCCCCCCCCCAATATTTTGCAAAGTATTT
TTTTTTTTACTTTGAAAAATCTTATATATACCGTTTAGAGGGGTGAAATA
AGGGCAAAAAGTCGAAAATTTTCTTCGTCGCCCACCATGGTTCGCCCTCA
ATTCGATGCGCACGCCGGGGGCCATGCCCTCTACTAACGGTTTTTTCGAA
GTCTGAAAATCAAATATCTGAGGCTACCAACGGATTCAGTGTGAAAAGTA
GATAACTTGAATCCCTTCTTCCCTTTTTAGGAAGCTTTTTGAAGCTAAGA
AAGAGATCCGAGTCTTGGCTGTTGGTACCGGAACGGGTGAAGTTGATGTT
GATTTTCTTGCAGAAATCACAAAGCGCGGGCGTGAAGTACATGGAGAGGA
TTACAGCGTTGTGTATCAGGTAGTTGAGCCTAACCCTGAATCAGTGGAAT
ACTTCAAAGGCGTCGTAACCAAGGACGATAATTTATCTAAAGTCACTTTC
CAGTGGTTTACCGGTTTCTTTGACCCGTTTTGTGAAGAATTCAAGAAAAC
AGCTAGCAAAGATACTAGGTTTGATTTCGCTCATTATGTACGATGTACGT
ACCATATTGATAGTGTTTCTGCCCTACAAGTGACGTACGAACACTTGTTA
AGAAAAAATGGAGTAGTCGCAGTTGTAGGTGAGAATGAGAATGCTTTCTG
GCCACGCATGATGCCTTTCTTAGCTAAACATGAAATGAAGCATGAATGTT
TCACATGTTCTGGCCCTGTTTCCGATGCTTATTTCCTACCTGGTTGGAAA
AAGCAAGCGGAAACGAACGGCTGGAAGTTTGATGTCTGGATTAAAAAATA
TAATTTCAATATTACACTGATGTATGATCCAGAATCGAAACCAGGAAATT
ATTTGATCGACTTCGCGCTTCATGGTAAAAATTGTCGACAAACTATATCT
AAAGTGGTTTTGGATGATTTCTTTGAGCTTTTAAACGCCCATTCACATGA
GGAAGAAGTTGAAGTTGAGGGCGTCAAAGAGAAACGCCGCCATTATCCAT
GCGAGTTGGGCGCTATTATGATAACAAAGGAATAACAGCTCTGTTTTCAA
TCTTACCTAAAACCATGATGGAAACCTGAATATCAAATCAAACTGATCAA
TATTGCTCCGAATGATATTTTCATACTCAAATATACCTATGAAACTGGGG
GTTTTTTTAGCATTTGAATTCATACCCATGCCATACGTGCTTATGGCTGG
CTATCCAAAAGTTCGTTCAACATTTAAATGAAACTTGAAATGCAAATTAC
CAAACTTTTCGAGAAACGAACCAAGCTGGCAGCTCATAAAAACAGAACTC
CAGAATTCTGTTCCACCTTAGTTTTAATTCATTTTGTTTTTGTTAAATTG
TTCCAGTGCTAAGGCTATGAGACAATATAATGGTCTGATTTTAAAAATAT
TTTGATAATTTTGATTCTTAGTAAGTATTTTTGTGATTAAAATGAAAGTA
AGGTATCATTATTTACAAAGCTTTTGAATATTATCTTTATCTCTTCCAAC
TTTCACCAAAAAAGGCATCGATGGACTTAAAGGGACTGATTTTGCGTTTT
GCAACCTTACCTTGGACTGACATAAGAAACTGTTCAGTAGACTAGAGTCT
ATTTTTGACTCAAGTTTGCGGAAGTACCAGTGCCATGGGGCTAACTGTTT
TACAAGCACCGTGTTTAGGTAACTTTTTAAACTTTTGTGCGTGGACTATG
AAAAAGGTTTTTGTAACAAATATGCAATCTTTTTTTGGGTTTTATCAGTA
CCTAAAAATCTCAAAACACAAAATAATCAATTTGTGCTTTATCATTTTGA
AAGATCATCATAATATTTTGAAAGCATTTCAAAAGATTTTCTTCAAAA Coding sequence (CDS) from alignment at sc0000511:196276..200123- >TCONS_00024833 ID=TCONS_00024833|Name=TCONS_00024833|organism=Clytia hemisphaerica|type=CDS|length=1878bp|location=Sequence derived from alignment at sc0000511:196276..200123- (Clytia hemisphaerica)
GAAGCTTTTTGAAGCTAAGAAAGAGATCCGAGTCTTGGCTGTTGGTACCG
GAACGGGTGAAGTTGATGTTGATTTTCTTGCAGAAATCACAAAGCGCGGG
CGTGAAGTACATGGAGAGGATTACAGCGTTGTGTATCAGGTAGTTGAGCC
TAACCCTGAATCAGTGGAATACTTCAAAGGCGTCGTAACCAAGGACGATA
ATTTATCTAAAGTCACTTTCCAGTGGTTTACCGGTTTCTTTGACCCGTTT
TGTGAAGAATTCAAGAAAACAGCTAGCAAAGATACTAGGTTTGATTTCGC
TCATTATGTACGATGTACGTACCATATTGATAGTGTTTCTGCCCTACAAG
TGACGTACGAACACTTGTTAAGAAAAAATGGAGTAGTCGCAGTTGTAGGT
GAGAATGAGAATGCTTTCTGGCCACGCATGATGCCTTTCTTAGCTAAACA
TGAAATGAAGCATGAATGTTTCACATGTTCTGGCCCTGTTTCCGATGCTT
ATTTCCTACCTGGTTGGAAAAAGCAAGCGGAAACGAACGGCTGGAAGTTT
GATGTCTGGATTAAAAAATATAATTTCAATATTACACTGATGTATGATCC
AGAATCGAAACCAGGAAATTATTTGATCGACTTCGCGCTTCATGGTAAAA
ATTGTCGACAAACTATATCTAAAGTGGTTTTGGATGATTTCTTTGAGCTT
TTAAACGCCCATTCACATGAGGAAGAAGTTGAAGTTGAGGGCGTCAAAGA
GAAACGCCGCCATTATCCATGCGAGTTGGGCGCTATTATGATAACAAAGG
AATAAATGGTTGTCGAAGACTTGACATTGTTATCTGATGATGCAAACTAC
CGTGATACTTTGCAGACCTATTTGAAATATATGGAGCAACTTCCGCCACA
AAAGCTTTGGATGAAAGAAGAACTAGGCCCAAGAATCGCGAAGCTTTTTG
AAGCTAAGAAAGAGATCCGAGTCTTGGCTGTTGGTACCGGAACGGGTGAA
GTTGATGTTGATTTTCTTGCAGAAATCACAAAGCGCGGGCGTGAAGTACA
TGGAGAGGATTACAGCGTTGTGTATCAGGTAGTTGAGCCTAACCCTGAAT
CAGTGGAATACTTCAAAGGCGTCGTAACCAAGGACGATAATTTATCTAAA
GTCACTTTCCAGTGGTTTACCGGTTTCTTTGACCCGTTTTGTGAAGAATT
CAAGAAAACAGCTAGCAAAGATACTAGGTTTGATTTCGCTCATTATGTAC
GATGTACGTACCATATTGATAGTGTTTCTGCCCTACAAGTGACGTACGAA
CACTTGTTAAGAAAAAATGGAGTAGTCGCAGTTGTAGGTGAGAATGAGAA
TGCTTTCTGGCCACGCATGATGCCTTTCTTAGCTAAACATGAAATGAAGC
ATGAATGTTTCACATGTTCTGGCCCTGTTTCCGATGCTTATTTCCTACCT
GGTTGGAAAAAGCAAGCGGAAACGAACGGCTGGAAGTTTGATGTCTGGAT
TAAAAAATATAATTTCAATATTACACTGATGTATGATCCAGAATCGAAAC
CAGGAAATTATTTGATCGACTTCGCGCTTCATGGTAAAAATTGTCGACAA
ACTATATCTAAAGTGGTTTTGGATGATTTCTTTGAGCTTTTAAACGCCCA
TTCACATGAGGAAGAAGTTGAAGTTGAGGGCGTCAAAGAGAAACGCCGCC
ATTATCCATGCGAGTTGGGCGCTATTATGATAACAAAGGAATAAATGGTT
GTCGAAGACTTGACATTGTTATCTGATGATGCAAACTACCGTGATACTTT
GCAGACCTATTTGAAATATATGGAGCAACTTCCGCCACAAAAGCTTTGGA
TGAAAGAAGAACTAGGCCCAAGAATCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024833-exon-sc0000511-1575043694:200000..200123 | TCONS_00024833-exon-sc0000511-1575043694:200000..200123 | Clytia hemisphaerica | exon |
| TCONS_00024833-exon-sc0000511-1575043694:199338..199504 | TCONS_00024833-exon-sc0000511-1575043694:199338..199504 | Clytia hemisphaerica | exon |
| TCONS_00024833-exon-sc0000511-1575043694:196276..197893 | TCONS_00024833-exon-sc0000511-1575043694:196276..197893 | Clytia hemisphaerica | exon |
| TCONS_00024833-exon-sc0000511-1510915933:200000..200123 | TCONS_00024833-exon-sc0000511-1510915933:200000..200123 | Clytia hemisphaerica | exon |
| TCONS_00024833-exon-sc0000511-1510915933:199338..199504 | TCONS_00024833-exon-sc0000511-1510915933:199338..199504 | Clytia hemisphaerica | exon |
| TCONS_00024833-exon-sc0000511-1510915933:196276..197893 | TCONS_00024833-exon-sc0000511-1510915933:196276..197893 | Clytia hemisphaerica | exon |
| TCONS_00024833-exon-sc0000511-1491911889:200000..200123 | TCONS_00024833-exon-sc0000511-1491911889:200000..200123 | Clytia hemisphaerica | exon |
| TCONS_00024833-exon-sc0000511-1491911889:199338..199504 | TCONS_00024833-exon-sc0000511-1491911889:199338..199504 | Clytia hemisphaerica | exon |
| TCONS_00024833-exon-sc0000511-1491911889:196276..197893 | TCONS_00024833-exon-sc0000511-1491911889:196276..197893 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000511 | supercontig | sc0000511:196276..200123 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029063 | SAM-dependent_MTases |
Blast
The following BLAST results are available for this feature:
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