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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024820 ID=TCONS_00024820|Name=TCONS_00024820|organism=Clytia hemisphaerica|type=transcript|length=1512bp
cagctcgcaaccctagtaccccgtCCGGgaattctattttcaaaaactgc
attTCGGCGCTTTCTATATTCCTGACATTTCCTTCAATTGCATTTGTTTT
TGTCGTTTTATAGAATATGGCTCTATTCTTGGTAAACCCCTGCAAACAAT
GGAAGTGTTGACGAAAAGCTGGTTCCTTCAGCTTACTATCAAATACGAGA
CGTTTCAAGGAAATGGGGCAACATTTATTTATAGAGAAGTTGGTGAACTG
GACGGAGTGTTTCTTATGTCATGGCCTGAACAACATCAAATGAAATTTAC
GTACGATCATAGTGGAATTAGTGAAGCAAAAACCTTCATAGATCTTGATA
ACACTCAATGGTATACAATTACTGCTTGTCAGTATTATTCATTCGCTTTA
GAGGATTTCATTTTCGAAGTCCGAATTGATGGAAATTTGTTTTGGTCAGT
TATCAATACAAAACCTAAAGAATATGAGAATGTGGAGTTGATTGTTAAAG
GTCGAAAGGTTCGAATCAAAGATTATTTTCTGATGAACCTTTAAGTTGAT
AATATGGAAACTATTTTCTAAGACATCAATGCCATACATAACTCAACTAT
TTGAGTACCCTGCTCCTTTCATCGTCTCGTTTAGTTCACAGATTCGATCg
taaaaacaatttaaagacTGTCTAAGAACAGCGCTGTTGTAAAGTGAAGG
CGTTGGAAGAAGAAATTATTTGAACTTAAGTTAttcattttacattttct
taAATGGGAGTGCTTCCATGGAAGTCTATACACCCGCTATACATCTCCCG
AATCGTAGCTCTATTCTGAAAGTGGTATGGCCATGATGCATTGACTAAAA
GAAGTGCTTACATTTTCAGCCTAAACAGgtggacttttttgaaaattatc
tcTTCTGGAAATGCAAGACACAGGTCtactgaaaaaaaacttttaagcaG
ACTTAGCTTAAAAAATATTATTCAGGAGTGAAATATTATCGAACAAACAT
TGGAATTTgggaagaaaagaagaaaatttgtttACACTGATTCCACTGGC
GAATtcaagacaatagagcaagtatgtcggaaacatgcgaaggagtgcat
agctcgttaaaagacaatgaaattacaattacagatctcttcttctgata
agttcgacgtggtctaaaaccgcctatggaATGATATAGGTTCTTaatat
tagaaattttttttatgtgaAAACGGTGATCAGAGCAAAATCTTTTAAGA
AGTTGCCTTTTGTAATATTCATATACGCACTTTTTTGAAGGGAACACTCT
ACTGCTGTAGCTCCTGAAATATTAAGTGTTAAACTCGTGCCTTGTGACAA
AAGCCTTTTGTCATTTCAAAATTAGTGTTAAAATTTATTATGGAAAACTG
TTCAGAGAGCATTTTAAGATCACGTTATTTAATATACTAgtagttaaagg
ttttgtttttataagtcTATAAGTGATCTATATAGTGATATCGAATGCTT
ACTCattaattt Run BLAST on NCBI protein sequence of TCONS_00024820-protein >TCONS_00024820-protein ID=TCONS_00024820-protein|Name=TCONS_00024820-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MEVLTKSWFLQLTIKYETFQGNGATFIYREVGELDGVFLMSWPEQHQMKF
TYDHSGISEAKTFIDLDNTQWYTITACQYYSFALEDFIFEVRIDGNLFWS
VINTKPKEYENVELIVKGRKVRIKDYFLMNL Run BLAST on NCBI transcript from alignment at sc0000510:236652..238163 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024820 ID=TCONS_00024820|Name=TCONS_00024820|organism=Clytia hemisphaerica|type=transcript|length=1512bp|location=Sequence derived from alignment at sc0000510:236652..238163 (Clytia hemisphaerica)
aaattaatGAGTAAGCATTCGATATCACTATATAGATCACTTATAgactt
ataaaaacaaaacctttaactacTAGTATATTAAATAACGTGATCTTAAA
ATGCTCTCTGAACAGTTTTCCATAATAAATTTTAACACTAATTTTGAAAT
GACAAAAGGCTTTTGTCACAAGGCACGAGTTTAACACTTAATATTTCAGG
AGCTACAGCAGTAGAGTGTTCCCTTCAAAAAAGTGCGTATATGAATATTA
CAAAAGGCAACTTCTTAAAAGATTTTGCTCTGATCACCGTTTtcacataa
aaaaaatttctaatattAAGAACCTATATCATtccataggcggttttaga
ccacgtcgaacttatcagaagaagagatctgtaattgtaatttcattgtc
ttttaacgagctatgcactccttcgcatgtttccgacatacttgctctat
tgtcttgaATTCGCCAGTGGAATCAGTGTaaacaaattttcttcttttct
tcccAAATTCCAATGTTTGTTCGATAATATTTCACTCCTGAATAATATTT
TTTAAGCTAAGTCtgcttaaaagttttttttcagtaGACCTGTGTCTTGC
ATTTCCAGAAgagataattttcaaaaaagtccacCTGTTTAGGCTGAAAA
TGTAAGCACTTCTTTTAGTCAATGCATCATGGCCATACCACTTTCAGAAT
AGAGCTACGATTCGGGAGATGTATAGCGGGTGTATAGACTTCCATGGAAG
CACTCCCATTtaagaaaatgtaaaatgaaTAACTTAAGTTCAAATAATTT
CTTCTTCCAACGCCTTCACTTTACAACAGCGCTGTTCTTAGACAgtcttt
aaattgtttttacGATCGAATCTGTGAACTAAACGAGACGATGAAAGGAG
CAGGGTACTCAAATAGTTGAGTTATGTATGGCATTGATGTCTTAGAAAAT
AGTTTCCATATTATCAACTTAAAGGTTCATCAGAAAATAATCTTTGATTC
GAACCTTTCGACCTTTAACAATCAACTCCACATTCTCATATTCTTTAGGT
TTTGTATTGATAACTGACCAAAACAAATTTCCATCAATTCGGACTTCGAA
AATGAAATCCTCTAAAGCGAATGAATAATACTGACAAGCAGTAATTGTAT
ACCATTGAGTGTTATCAAGATCTATGAAGGTTTTTGCTTCACTAATTCCA
CTATGATCGTACGTAAATTTCATTTGATGTTGTTCAGGCCATGACATAAG
AAACACTCCGTCCAGTTCACCAACTTCTCTATAAATAAATGTTGCCCCAT
TTCCTTGAAACGTCTCGTATTTGATAGTAAGCTGAAGGAACCAGCTTTTC
GTCAACACTTCCATTGTTTGCAGGGGTTTACCAAGAATAGAGCCATATTC
TATAAAACGACAAAAACAAATGCAATTGAAGGAAATGTCAGGAATATAGA
AAGCGCCGAaatgcagtttttgaaaatagaattcCCGGacggggtactag
ggttgcgagctg Coding sequence (CDS) from alignment at sc0000510:236652..238163 >TCONS_00024820 ID=TCONS_00024820|Name=TCONS_00024820|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at sc0000510:236652..238163 (Clytia hemisphaerica)
TTAAAGGTTCATCAGAAAATAATCTTTGATTCGAACCTTTCGACCTTTAA
CAATCAACTCCACATTCTCATATTCTTTAGGTTTTGTATTGATAACTGAC
CAAAACAAATTTCCATCAATTCGGACTTCGAAAATGAAATCCTCTAAAGC
GAATGAATAATACTGACAAGCAGTAATTGTATACCATTGAGTGTTATCAA
GATCTATGAAGGTTTTTGCTTCACTAATTCCACTATGATCGTACGTAAAT
TTCATTTGATGTTGTTCAGGCCATGACATAAGAAACACTCCGTCCAGTTC
ACCAACTTCTCTATAAATAAATGTTGCCCCATTTCCTTGAAACGTCTCGT
ATTTGATAGTAAGCTGAAGGAACCAGCTTTTCGTCAACACTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024820-exon-sc0000510-1491911889:236652..238163 | TCONS_00024820-exon-sc0000510-1491911889:236652..238163 | Clytia hemisphaerica | exon |
| TCONS_00024820-exon-sc0000510-1510915933:236652..238163 | TCONS_00024820-exon-sc0000510-1510915933:236652..238163 | Clytia hemisphaerica | exon |
| TCONS_00024820-exon-sc0000510-1575043694:236652..238163 | TCONS_00024820-exon-sc0000510-1575043694:236652..238163 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000510 | supercontig | sc0000510:236652..238163 . |
Blast
The following BLAST results are available for this feature:
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