TCONS_00024817 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024817
Unique NameTCONS_00024817
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length527

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024817 ID=TCONS_00024817|Name=TCONS_00024817|organism=Clytia hemisphaerica|type=transcript|length=527bp
GAAAACTCTCATTGTTAACTGTGTATATCAATTTTTTACTGCTTGTAAAT
AGACCAACTTTTTTCGAATGTGAAGAATAcattattcgataaaaatttta
aatcgtTTCTCATTTCATATTATTGAGAAGGAATTATTTGGTCAGTGAAA
CTATAATTTACAtccatttcaaaaaaatatactaTAAACATTATtacaaa
acaatttgaaaataagaGCTGTGTCAAGAGGCGGGCTATCCAGGTTAACT
ATAGGTCAAAATAGAATCTTTGAAATTCCACTAATGCAAGGGTAAAAAAA
TCAGTAGTGATATTAGTGATATCCAGTGAACTTGTGTAGCCCAAAACGCC
TCAAATTAACCCATGAACTAATAGGCTCTTGTGTGCTTAATTTTAGGGGG
GGattaattttgcaatttttggaaaaaaatcgcccccatatcactttata
atgaccccccaATATTTTATGACCTTTAGGCTacaaagtgccaaaattgg
ccaaaaaaccATCATTTTCCTAGGTAT
Run BLAST on NCBI

transcript from alignment at sc0000510:204874..205400

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024817 ID=TCONS_00024817|Name=TCONS_00024817|organism=Clytia hemisphaerica|type=transcript|length=527bp|location=Sequence derived from alignment at sc0000510:204874..205400 (Clytia hemisphaerica)
ATACCTAGGAAAATGATggttttttggccaattttggcactttgtAGCCT
AAAGGTCATAAAATATtggggggtcattataaagtgatatgggggcgatt
tttttccaaaaattgcaaaattaatCCCCCCCTAAAATTAAGCACACAAG
AGCCTATTAGTTCATGGGTTAATTTGAGGCGTTTTGGGCTACACAAGTTC
ACTGGATATCACTAATATCACTACTGATTTTTTTACCCTTGCATTAGTGG
AATTTCAAAGATTCTATTTTGACCTATAGTTAACCTGGATAGCCCGCCTC
TTGACACAGCtcttattttcaaattgttttgtaATAATGTTTAtagtata
tttttttgaaatggaTGTAAATTATAGTTTCACTGACCAAATAATTCCTT
CTCAATAATATGAAATGAGAAacgatttaaaatttttatcgaataatgTA
TTCTTCACATTCGAAAAAAGTTGGTCTATTTACAAGCAGTAAAAAATTGA
TATACACAGTTAACAATGAGAGTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013948XLOC_013948Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024817-exon-sc0000510-1491911889:204874..205400TCONS_00024817-exon-sc0000510-1491911889:204874..205400Clytia hemisphaericaexon
TCONS_00024817-exon-sc0000510-1510915933:204874..205400TCONS_00024817-exon-sc0000510-1510915933:204874..205400Clytia hemisphaericaexon
TCONS_00024817-exon-sc0000510-1575043694:204874..205400TCONS_00024817-exon-sc0000510-1575043694:204874..205400Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000510supercontigsc0000510:204874..205400 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.78832	1.63794	0.956422	0.721938	1.01841	0.713335	0.463495	1.29609	1.03984	0.763291	0.565036	0.882928	0.264422	0.279981	0.0864555	0.50304	1.27311	1.01372	0.711578	0.124102	0.747327	2.20708	0.606973	0.885679	0	0.236572	0.352645	0.367931	1.06029	1.19142
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024817 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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