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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024814 ID=TCONS_00024814|Name=TCONS_00024814|organism=Clytia hemisphaerica|type=transcript|length=1782bp
TTTTGTTTAGACTGTCGCGTCCGTAGATCCTATGATTTTCACAGTGATCA
TAAACTTGTTGTTACACGTTTTAAAACACCGAAACACAAAACAttgttaa
aaacttcaaaatatacAAATTCAATATCTAAGAAGTTCGATTTCAAAAAC
CTCACACGGAATAATAAAGAAAACTTCGTCAAATCCCTAACGGAAAATCT
TTCACCTACACAACAAGTATCACCAGAATCCATAATCGAAACCATACAAC
TATCGGCCGAAGAATTCCTTCCTCGTGTCAACAAAACCCAAAAACAACCG
TTTCCATGGGATAACGATTATGAACTGAAAGAACTTCTCGAGCGAAGAAA
ACAATACCACATCAAACACGATAAAAAGCAATATCGAGCAACTCAAAGGA
AGATTCGTAAACGAGTAACACTCCTACGAAATAAACACTACGCAAATGAA
GCATCTAAGTTTACTGCTGCACAAACTGCTCGTGACATCGCCCAATCCTA
TAAAATCGCCAAAGAACAATNGAATGAGTAATTTCTATTTGTCAATTGGA
GAAGTTTCAtatctcggagctccaattcAACAACTAACAGAGATACGATT
ATCAACCACCATCGACCTACTTTCATGTCCAACAAAAAACATCATTTCTG
GCGATGCGGAACCATCAATGTACGGTCGTTACAAGAAAACTCTAACCCCC
TCGAAATCAAACACACTATTGTTGACAATGTCCGACAAAGTAGACTCGAC
ATATGTTCTTTACAAGAGACACGATTACTCGGTAAAGACTACTTAGATTT
CAAAGACTACCAGATGCACTGGTCAGGATTTGTTCGCAAACGGGAACAAA
GTGTCGCACTTATCTTAAAGAAACACAACAGCATCGTTATTGAATCAATC
GAAGGTATCTCATCTCGAATTATGTATGCTTACTTTCATGGTCAATCACT
TGAAGACACCCAACATAACGACAATGGAAATCGATTGGTTCGTTTCTGTG
CAGAATTTCAGTCACCTATTCTGAACACGTACTTTCGACACAAACCCGCA
AATTCATATACTTGGTATAGCAACGATAACCGTANACATTTTCGCGACCA
TTTCAACCCTGATCAACTAAATGTACCAAACCCACTTTCACTACCATTAC
CACGAGATCAACCGTTAGATATAAATGATCTTCCACCCGCCATAGATGAA
ATAACCAAAGCTATTACTAGACTTCGTAATAACAAAGCAAGTCTTGATAT
TTCCGCTGAACTACTAAAATTCAGTCTTGAAAGTAACGAATTCAAAACAA
CTATCCACAAATTTTTCAATGACATCtgggaaaataaaaaagttccaGAC
TATTTTGGCAAAGGAGAAATAAATGCcatattcaaaaataaaggctCTCC
CCGTGATCCAACGAAATACCGCAGAATTACCTTATCGAGTATTTTGACCA
AAGTGCTTGTGAACATTGTTTTGAATAGATGTCTCAACTTTTATGATGAT
ATACTGAATGAAGGACAAATGGGATTTCGACCAGGGAGAGGATGCACGGA
CGGTATCTATTGTCTGAAAAGAATTCATCAATGGGCGcgaaaacaagaaa
aagaactttttatcgGCATGGTTGATTTGTCCGCTGCTTTCGACCACATC
CGTAGAGATTGGCTATTCACCGTTGTCCAATGATACTTTGGAAACCTAAC
AATGTTCAAAATCATTGAAGATATGTATGATAAAACTAACTGTTCAATGA
AAGGTTGTTCTATAATCTTTGAAACTACCTCG Run BLAST on NCBI protein sequence of TCONS_00024814-protein >TCONS_00024814-protein ID=TCONS_00024814-protein|Name=TCONS_00024814-protein|organism=Clytia hemisphaerica|type=polypeptide|length=352bp
MSNKKHHFWRCGTINVRSLQENSNPLEIKHTIVDNVRQSRLDICSLQETR
LLGKDYLDFKDYQMHWSGFVRKREQSVALILKKHNSIVIESIEGISSRIM
YAYFHGQSLEDTQHNDNGNRLVRFCAEFQSPILNTYFRHKPANSYTWYSN
DNRXHFRDHFNPDQLNVPNPLSLPLPRDQPLDINDLPPAIDEITKAITRL
RNNKASLDISAELLKFSLESNEFKTTIHKFFNDIWENKKVPDYFGKGEIN
AIFKNKGSPRDPTKYRRITLSSILTKVLVNIVLNRCLNFYDDILNEGQMG
FRPGRGCTDGIYCLKRIHQWARKQEKELFIGMVDLSAAFDHIRRDWLFTV
VQ Run BLAST on NCBI transcript from alignment at sc0000510:182960..184741 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024814 ID=TCONS_00024814|Name=TCONS_00024814|organism=Clytia hemisphaerica|type=transcript|length=1782bp|location=Sequence derived from alignment at sc0000510:182960..184741 (Clytia hemisphaerica)
CGAGGTAGTTTCAAAGATTATAGAACAACCTTTCATTGAACAGTTAGTTT
TATCATACATATCTTCAATGATTTTGAACATTGTTAGGTTTCCAAAGTAT
CATTGGACAACGGTGAATAGCCAATCTCTACGGATGTGGTCGAAAGCAGC
GGACAAATCAACCATGCcgataaaaagttctttttcttgttttcgCGCCC
ATTGATGAATTCTTTTCAGACAATAGATACCGTCCGTGCATCCTCTCCCT
GGTCGAAATCCCATTTGTCCTTCATTCAGTATATCATCATAAAAGTTGAG
ACATCTATTCAAAACAATGTTCACAAGCACTTTGGTCAAAATACTCGATA
AGGTAATTCTGCGGTATTTCGTTGGATCACGGGGAGagcctttatttttg
aatatgGCATTTATTTCTCCTTTGCCAAAATAGTCtggaacttttttatt
ttcccaGATGTCATTGAAAAATTTGTGGATAGTTGTTTTGAATTCGTTAC
TTTCAAGACTGAATTTTAGTAGTTCAGCGGAAATATCAAGACTTGCTTTG
TTATTACGAAGTCTAGTAATAGCTTTGGTTATTTCATCTATGGCGGGTGG
AAGATCATTTATATCTAACGGTTGATCTCGTGGTAATGGTAGTGAAAGTG
GGTTTGGTACATTTAGTTGATCAGGGTTGAAATGGTCGCGAAAATGTNTA
CGGTTATCGTTGCTATACCAAGTATATGAATTTGCGGGTTTGTGTCGAAA
GTACGTGTTCAGAATAGGTGACTGAAATTCTGCACAGAAACGAACCAATC
GATTTCCATTGTCGTTATGTTGGGTGTCTTCAAGTGATTGACCATGAAAG
TAAGCATACATAATTCGAGATGAGATACCTTCGATTGATTCAATAACGAT
GCTGTTGTGTTTCTTTAAGATAAGTGCGACACTTTGTTCCCGTTTGCGAA
CAAATCCTGACCAGTGCATCTGGTAGTCTTTGAAATCTAAGTAGTCTTTA
CCGAGTAATCGTGTCTCTTGTAAAGAACATATGTCGAGTCTACTTTGTCG
GACATTGTCAACAATAGTGTGTTTGATTTCGAGGGGGTTAGAGTTTTCTT
GTAACGACCGTACATTGATGGTTCCGCATCGCCAGAAATGATGTTTTTTG
TTGGACATGAAAGTAGGTCGATGGTGGTTGATAATCGTATCTCTGTTAGT
TGTTgaattggagctccgagataTGAAACTTCTCCAATTGACAAATAGAA
ATTACTCATTCNATTGTTCTTTGGCGATTTTATAGGATTGGGCGATGTCA
CGAGCAGTTTGTGCAGCAGTAAACTTAGATGCTTCATTTGCGTAGTGTTT
ATTTCGTAGGAGTGTTACTCGTTTACGAATCTTCCTTTGAGTTGCTCGAT
ATTGCTTTTTATCGTGTTTGATGTGGTATTGTTTTCTTCGCTCGAGAAGT
TCTTTCAGTTCATAATCGTTATCCCATGGAAACGGTTGTTTTTGGGTTTT
GTTGACACGAGGAAGGAATTCTTCGGCCGATAGTTGTATGGTTTCGATTA
TGGATTCTGGTGATACTTGTTGTGTAGGTGAAAGATTTTCCGTTAGGGAT
TTGACGAAGTTTTCTTTATTATTCCGTGTGAGGTTTTTGAAATCGAACTT
CTTAGATATTGAATTTgtatattttgaagtttttaacaaTGTTTTGTGTT
TCGGTGTTTTAAAACGTGTAACAACAAGTTTATGATCACTGTGAAAATCA
TAGGATCTACGGACGCGACAGTCTAAACAAAA Coding sequence (CDS) from alignment at sc0000510:182960..184741 >TCONS_00024814 ID=TCONS_00024814|Name=TCONS_00024814|organism=Clytia hemisphaerica|type=CDS|length=1059bp|location=Sequence derived from alignment at sc0000510:182960..184741 (Clytia hemisphaerica)
TCATTGGACAACGGTGAATAGCCAATCTCTACGGATGTGGTCGAAAGCAG
CGGACAAATCAACCATGCcgataaaaagttctttttcttgttttcgCGCC
CATTGATGAATTCTTTTCAGACAATAGATACCGTCCGTGCATCCTCTCCC
TGGTCGAAATCCCATTTGTCCTTCATTCAGTATATCATCATAAAAGTTGA
GACATCTATTCAAAACAATGTTCACAAGCACTTTGGTCAAAATACTCGAT
AAGGTAATTCTGCGGTATTTCGTTGGATCACGGGGAGagcctttattttt
gaatatgGCATTTATTTCTCCTTTGCCAAAATAGTCtggaacttttttat
tttcccaGATGTCATTGAAAAATTTGTGGATAGTTGTTTTGAATTCGTTA
CTTTCAAGACTGAATTTTAGTAGTTCAGCGGAAATATCAAGACTTGCTTT
GTTATTACGAAGTCTAGTAATAGCTTTGGTTATTTCATCTATGGCGGGTG
GAAGATCATTTATATCTAACGGTTGATCTCGTGGTAATGGTAGTGAAAGT
GGGTTTGGTACATTTAGTTGATCAGGGTTGAAATGGTCGCGAAAATGTNT
ACGGTTATCGTTGCTATACCAAGTATATGAATTTGCGGGTTTGTGTCGAA
AGTACGTGTTCAGAATAGGTGACTGAAATTCTGCACAGAAACGAACCAAT
CGATTTCCATTGTCGTTATGTTGGGTGTCTTCAAGTGATTGACCATGAAA
GTAAGCATACATAATTCGAGATGAGATACCTTCGATTGATTCAATAACGA
TGCTGTTGTGTTTCTTTAAGATAAGTGCGACACTTTGTTCCCGTTTGCGA
ACAAATCCTGACCAGTGCATCTGGTAGTCTTTGAAATCTAAGTAGTCTTT
ACCGAGTAATCGTGTCTCTTGTAAAGAACATATGTCGAGTCTACTTTGTC
GGACATTGTCAACAATAGTGTGTTTGATTTCGAGGGGGTTAGAGTTTTCT
TGTAACGACCGTACATTGATGGTTCCGCATCGCCAGAAATGATGTTTTTT
GTTGGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024814-exon-sc0000510-1491911889:182960..184741 | TCONS_00024814-exon-sc0000510-1491911889:182960..184741 | Clytia hemisphaerica | exon |
| TCONS_00024814-exon-sc0000510-1510915933:182960..184741 | TCONS_00024814-exon-sc0000510-1510915933:182960..184741 | Clytia hemisphaerica | exon |
| TCONS_00024814-exon-sc0000510-1575043694:182960..184741 | TCONS_00024814-exon-sc0000510-1575043694:182960..184741 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000510 | supercontig | sc0000510:182960..184741 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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