TCONS_00024809 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024809
Unique NameTCONS_00024809
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length439

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024809 ID=TCONS_00024809|Name=TCONS_00024809|organism=Clytia hemisphaerica|type=transcript|length=439bp
acgttcacgcaagtttttttaattcacgcattcacgcaattttttttcaa
ttttcacgcattcacgcaaccaaaaaagcccattcacgcattcacgcaaa
ccgctgggggggcccccATAATGCTGTTCACTTCTGTGCATTATTGAGAT
TCGATACTACTGGGCTCAAATGCTTCATCATCTGACTCAATTGGGATAGC
CATATTGTTGCTTGTTGATTTTGAACAACATTGTCCGTCGTCGACATCTA
GACTAGCTTGTTTTGTAACCAATGGACTCTTTGATAATGCAGCTAAATCT
TTAAATACCCCTGAAATCGCCACTTGGTGATCCTTGCGAGCCGTGCCTAG
CATTTTCTCCATGCATTTCTGTCCCTGTGTAGCGACTATTCTCGATTGTT
TCTTTTTGTAGTGTACCTTTGCAACATCAGAGCTATGCT
Run BLAST on NCBI

transcript from alignment at sc0000510:137536..137974

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024809 ID=TCONS_00024809|Name=TCONS_00024809|organism=Clytia hemisphaerica|type=transcript|length=439bp|location=Sequence derived from alignment at sc0000510:137536..137974 (Clytia hemisphaerica)
AGCATAGCTCTGATGTTGCAAAGGTACACTACAAAAAGAAACAATCGAGA
ATAGTCGCTACACAGGGACAGAAATGCATGGAGAAAATGCTAGGCACGGC
TCGCAAGGATCACCAAGTGGCGATTTCAGGGGTATTTAAAGATTTAGCTG
CATTATCAAAGAGTCCATTGGTTACAAAACAAGCTAGTCTAGATGTCGAC
GACGGACAATGTTGTTCAAAATCAACAAGCAACAATATGGCTATCCCAAT
TGAGTCAGATGATGAAGCATTTGAGCCCAGTAGTATCGAATCTCAATAAT
GCACAGAAGTGAACAGCATTATgggggcccccccagcggtttgcgtgaat
gcgtgaatgggcttttttggttgcgtgaatgcgtgaaaattgaaaaaaaa
ttgcgtgaatgcgtgaattaaaaaaacttgcgtgaacgt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013940XLOC_013940Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024809-exon-sc0000510-1491911889:137536..137974TCONS_00024809-exon-sc0000510-1491911889:137536..137974Clytia hemisphaericaexon
TCONS_00024809-exon-sc0000510-1510915933:137536..137974TCONS_00024809-exon-sc0000510-1510915933:137536..137974Clytia hemisphaericaexon
TCONS_00024809-exon-sc0000510-1575043694:137536..137974TCONS_00024809-exon-sc0000510-1575043694:137536..137974Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000510supercontigsc0000510:137536..137974 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.55047	1.8412	1.04765	1.56455	1.9291	1.68791	1.82327	1.12192	0.392098	1.86772	2.14126	1.42143	1.78943	2.37415	1.17208	1.12343	0.871731	0.67916	2.12741	1.65394	0.623554	1.78187	1.06482	1.27259	0	0.598153	2.3499	2.29472	0.715143	0.715188
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024809 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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