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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024786 ID=TCONS_00024786|Name=TCONS_00024786|organism=Clytia hemisphaerica|type=transcript|length=1296bpRun BLAST on NCBI transcript from alignment at sc0000510:165468..216380- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024786 ID=TCONS_00024786|Name=TCONS_00024786|organism=Clytia hemisphaerica|type=transcript|length=50913bp|location=Sequence derived from alignment at sc0000510:165468..216380- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00024786 vs. Swiss-Prot (Human)
Match: RHAG (Ammonium transporter Rh type A OS=Homo sapiens GN=RHAG PE=1 SV=2) HSP 1 Score: 305.064 bits (780), Expect = 9.887e-99 Identity = 184/434 (42.40%), Postives = 260/434 (59.91%), Query Frame = 2
Query: 44 KVSFSVFLFSFQIVLLALFANYVEYD---------NVGQAVN-----DSYPQFQDVHVMMFFGIGFLMTFLKRYGFGSITYNFLIGAVVIQWATLVNAWCHQSIKKADDPTTVKINLVTLMTSDFTSAVVLISYGAVLGKISRFQILVMAILECVVFAVSESVIMKYLGISDIGGSIVIHLFAAYFGIAVSTVI---GHPTVNAKESSDRTSDLFSMAGTIFLWVYWPSFNSGLLSGKDHEAQTRAIINTYFSLAACVVTTMVISPMLDKRFKVSMVHIQNATLXXXXXXXXXXDLHIQPWGAILIGMIASVCSVLGYSYLTPFLSSKLKIHDTCGIHNLHGIPGFLXXXXXXXXXXXXGEKGRQYYTNTKDGSDEWSLKKQGGYQIXXXXXXXXXXXIGGIITGFIMK-HLDGTESQNDFFDDNYEFLTPEEE 1291
+ +F + +I ++ LF +VEY+ N+ + + + YP FQDVHVM+F G GFLMTFLK+YGF S+ N L+ A+ +QW T+V +K + I + ++ +DF++A VLIS+GAVLGK S Q+L+M ILE V FA +E ++ + SDIG S+ IH F AYFG+AV+ ++ G + E S SDLF+M GT+FLW++WPSFNS + D Q RAI+NTYFSLAACV+T S +++ R K++MVHIQNATLAGGVAVG AD+ I P+G+++IG IA + SVLGY +LTP ++KL+IHDTCG+HNLHG+PG + G G+ S+ Q A S AV+GG++TG I+K L G S + +DD+ + P+
Sbjct: 2 RFTFPLMAIVLEIAMIVLFGLFVEYETDQTVLEQLNITKPTDMGIFFELYPLFQDVHVMIFVGFGFLMTFLKKYGFSSVGINLLVAALGLQWGTIVQGILQSQGQKFN------IGIKNMINADFSAATVLISFGAVLGKTSPTQMLIMTILEIVFFAHNEYLVSEIFKASDIGASMTIHAFGAYFGLAVAGILYRSGLRKGHENEESAYYSDLFAMIGTLFLWMFWPSFNSAIAEPGDK--QCRAIVNTYFSLAACVLTAFAFSSLVEHRGKLNMVHIQNATLAGGVAVGTCADMAIHPFGSMIIGSIAGMVSVLGYKFLTPLFTTKLRIHDTCGVHNLHGLPGVV--------------GGLAGIVAVAMGASNTSMAMQAA----ALGSSIGTAVVGGLMTGLILKLPLWGQPSDQNCYDDSVYWKVPKTR 409 The following BLAST results are available for this feature:
BLAST of TCONS_00024786 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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