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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024781 ID=TCONS_00024781|Name=TCONS_00024781|organism=Clytia hemisphaerica|type=transcript|length=2240bp
CAAAAGCATGAAACTATTGATACGAAATCatctgtttttttaattttggt
aatGGATAATTAGCAGTCTTCGATAAATTCGTTGTATTtcataaattgaa
attttgtattcaACGATTATTTATCTAACACGATAGGTGACTAAGAGGAA
AAATAAGCAAAGAACCAAAATTAACCGGGGTCCAAATCAAATGGCGTCCT
TCAGGGCATATAGGTTACCCCCTTTGTTATTTTGCTATACAGAAAGGGTA
TAAAATTTATCCTAAATGAATCGATTCgcaagttttttttatcttttaaa
ctTCTAAATCGACTAAAATTacttataaatatttcaaatattattACCAA
TCATCAATTAATTACATTATAAAAATCACGTttatataacattttattat
tatttacaataaaaatatttcattagaAAGTGTAACATTATTGACGGTTT
TTTTACTTTACATAAAAACTACTTTCTACTCAGCGGTCTCTCCTTTACTT
TTAATAAATTATCTTTAAATTAAATTATATTGTTACTTTAATGATACACA
CGCCTTTTTAGACTGTTACACGCGGTTTGTTTGCAAGTATTGCAGCAAGA
CAACCAAATCGAAAGGTGGGCTAACGAGGCATATGTCTTGCATTCATGAA
GAGTACCACTATGAAAACTAGTTCCAAGTTAGATGGGAGCTCATTGCATG
CCTTGATCAAGAAAGCCATAACATAACAGAGCTCGAAAAAGATCTTTGTT
ACCCAAAAGAAATTCGAGATGATTTCAAGCACTACAGCAATCAAATAATC
TTTCATGAAAGAAACTGTCAACTGTCAGTTCAGACAGCACCCAGTCTACA
TCAACTGACAAAACTTTCCGCAAAGTATAAAAATATCATTGAAAAACAAC
AAGTACAAGTACAAAATTGGCTCAAAGGGAAGCGCAGAAACAAGCAAAGC
AGGAAGAGGaccgccaaaacgaggctatgTAAGGCTTTTTTTGTTGATTG
ACGAGTTTACATTTCATACAAGAGTTTGTAGATTATTAAGTCACTAAAAT
GATTGTATTTATACTTTAATTTTTGCAAATACTTCTTGCTATTACCATCA
ACTACTACCAATCATTTACCATCNTTGCAAATACTTCTTGCTATTACAAT
CAATTACTACCAATTATTTACCATTAATAGGTCATATTTTAACGCCCATA
GTCACTTGGTTTAGTGTAAGAAATTGTGGAAGAGAAGATATTATGCTGTA
TTATGCGGAAATAAATAACGAAACAGCAATACAATTATTTTTCAGCATTG
TGGTTCTCTTCTTACTCGGTGGCAAAACCACcgtacaacaacaacaacaa
caacaacaacaacaactatAACAACCACCAGCAACAATTATCACCAGCGC
CTCCAACGAGggcagaaaagaaaaatagataatGAGGAGGACAGGTACGT
GAGGGAGTTTGGCTGGTGGGTGGCCCAGGGTGGGTTTTTCGAAAACTCGA
CAGAAAAAGTGGTTAATGAGCAAAAAGTTATTTCCATTTATATCATTCAT
TTATTCTCTTTCACTTTTAAAAGAGTCCTCGTTTATGGAAATCAAGATCA
TTGGATCTTTTAGAcattaaattttgtaaaaataagtttCGTCTTGTCCT
TCTATATTCAAAGTAAGATTGATACatcattcttttttttgtagCACGTG
CATCAGTTCGGTATGCACACCAAAAGAAGAAGATTGGGCACAGTCACAAG
GATAATCATTTGGAATTCGGCGGCTGGGTGAAGACTGGTGACCAGTTGTA
TGGATACTCTcatcaatttttgttatttttttttgtcctgcaatcctggc
cataatatttgagactNtattggaattaagttatgatgatagggtatttt
cttagtcctaatgaactaaggaaatggggaaattagtccatttcaatatt
tactgttctgagttagatattttgacgaaaatgtttgacctaacttttgg
ggttagttgacctacaatttgggagccttcataacccgacatgaaaagtt
tgtcaaattatataaaacttctTTGTTGTACTTTtataacatgaaagtac
taactgagagatgattaatgttgaaacTTTGAGCTTTTACAACGTGTCCC
AGACCCGTTGGGgccccagcccaatcagaaaatttgcctaagtttggagc
aatagaatttctattccaaTTTGGACTTAAGTAGAAATTT Run BLAST on NCBI transcript from alignment at sc0000510:107959..110428- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024781 ID=TCONS_00024781|Name=TCONS_00024781|organism=Clytia hemisphaerica|type=transcript|length=2470bp|location=Sequence derived from alignment at sc0000510:107959..110428- (Clytia hemisphaerica)
CAAAAGCATGAAACTATTGATACGAAATCATCTGTTTTTTTAATTTTGGT
AATGGATAATTAGCAGTCTTCGATAAATTCGTTGTATTTCATAAATTGAA
ATTTTGTATTCAACGATTATTTATCTAACACGATAGGTGACTAAGAGGAA
AAATAAGCAAAGAACCAAAATTAACCGGGGTCCAAATCAAATGGCGTCCT
TCAGGGCATATAGGTTACCCCCTTTGTTATTTTGCTATACAGAAAGGGTA
TAAAATTTATCCTAAATGAATCGATTCGCAAGTTTTTTTTATCTTTTAAA
CTTCTAAATCGACTAAAATTACTTATAAATATTTCAAATATTATTACCAA
TCATCAATTAATTACATTATAAAAATCACGTTTATATAACATTTTATTAT
TATTTACAATAAAAATATTTCATTAGAAAGTGTAACATTATTGACGGTTT
TTTTACTTTACATAAAAACTACTTTCTACTCAGCGGTCTCTCCTTTACTT
TTAATAAATTATCTTTAAATTAAATTATATTGTTACTTTAATGATACACA
CGCCTTTTTAGACTGTTACACGCGGTTTGTTTGCAAGTATTGCAGCAAGA
CAACCAAATCGAAAGGTGGGCTAACGAGGCATATGTCTTGCATTCATGAA
GAGTACCACTATGAAAACTAGTTCCAAGTTAGATGGGAGCTCATTGCATG
CCTTGATCAAGAAAGCCATAACATAACAGAGCTCGAAAAAGATCTTTGTT
ACCCAAAAGAAATTCGAGATGATTTCAAGCACTACAGCAATCAAATAATC
TTTCATGAAAGAAACTGTCAACTGTCAGTTCAGACAGCACCCAGTCTACA
TCAACTGACAAAACTTTCCGCAAAGTATAAAAATATCATTGAAAAACAAC
AAGTACAAGTACAAGTACGTTTTATTTCTAATTATTACTGCCTTCGCTAG
AAAATCCACTTTTAAATTAAAAGATCCTTTATTCGGTTGACTGGAAATTA
AATAGACTATTTTTAGAGCAAAGCATAAGGGAAAGGACCTTCTCCTATTT
TCAAATTATTCTCTAAAATCAATCGTCAAGTGAACTGGTTAATGTTCTTT
TATTTTTATAGCCTCTCTCATCTAAACTATGATTGTTCTTTAAGAATTGG
CTCAAAGGGAAGCGCAGAAACAAGCAAAGCAGGAAGAGGACCGCCAAAAC
GAGGCTATGTAAGGCTTTTTTTGTTGATTGACGAGTTTACATTTCATACA
AGAGTTTGTAGATTATTAAGTCACTAAAATGATTGTATTTATACTTTAAT
TTTTGCAAATACTTCTTGCTATTACCATCAACTACTACCAATCATTTACC
ATCNTTGCAAATACTTCTTGCTATTACAATCAATTACTACCAATTATTTA
CCATTAATAGGTCATATTTTAACGCCCATAGTCACTTGGTTTAGTGTAAG
AAATTGTGGAAGAGAAGATATTATGCTGTATTATGCGGAAATAAATAACG
AAACAGCAATACAATTATTTTTCAGCATTGTGGTTCTCTTCTTACTCGGT
GGCAAAACCACCGTACAACAACAACAACAACAACAACAACAACAACTATA
ACAACCACCAGCAACAATTATCACCAGCGCCTCCAACGAGGGCAGAAAAG
AAAAATAGATAATGAGGAGGACAGGTACGTGAGGGAGTTTGGCTGGTGGG
TGGCCCAGGGTGGGTTTTTCGAAAACTCGACAGAAAAAGTGGTTAATGAG
CAAAAAGTTATTTCCATTTATATCATTCATTTATTCTCTTTCACTTTTAA
AAGAGTCCTCGTTTATGGAAATCAAGATCATTGGATCTTTTAGACATTAA
ATTTTGTAAAAATAAGTTTCGTCTTGTCCTTCTATATTCAAAGTAAGATT
GATACATCATTCTTTTTTTTGTAGCACGTGCATCAGTTCGGTATGCACAC
CAAAAGAAGAAGATTGGGCACAGTCACAAGGATAATCATTTGGAATTCGG
CGGCTGGGTGAAGACTGGTGACCAGTTGTATGGATACTCTCATCAATTTT
TGTTATTTTTTTTTGTCCTGCAATCCTGGCCATAATATTTGAGACTNTAT
TGGAATTAAGTTATGATGATAGGGTATTTTCTTAGTCCTAATGAACTAAG
GAAATGGGGAAATTAGTCCATTTCAATATTTACTGTTCTGAGTTAGATAT
TTTGACGAAAATGTTTGACCTAACTTTTGGGGTTAGTTGACCTACAATTT
GGGAGCCTTCATAACCCGACATGAAAAGTTTGTCAAATTATATAAAACTT
CTTTGTTGTACTTTTATAACATGAAAGTACTAACTGAGAGATGATTAATG
TTGAAACTTTGAGCTTTTACAACGTGTCCCAGACCCGTTGGGGCCCCAGC
CCAATCAGAAAATTTGCCTAAGTTTGGAGCAATAGAATTTCTATTCCAAT
TTGGACTTAAGTAGAAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024781-exon-sc0000510-1575043694:109515..110428 | TCONS_00024781-exon-sc0000510-1575043694:109515..110428 | Clytia hemisphaerica | exon |
| TCONS_00024781-exon-sc0000510-1575043694:107959..109284 | TCONS_00024781-exon-sc0000510-1575043694:107959..109284 | Clytia hemisphaerica | exon |
| TCONS_00024781-exon-sc0000510-1510915933:109515..110428 | TCONS_00024781-exon-sc0000510-1510915933:109515..110428 | Clytia hemisphaerica | exon |
| TCONS_00024781-exon-sc0000510-1510915933:107959..109284 | TCONS_00024781-exon-sc0000510-1510915933:107959..109284 | Clytia hemisphaerica | exon |
| TCONS_00024781-exon-sc0000510-1491911889:109515..110428 | TCONS_00024781-exon-sc0000510-1491911889:109515..110428 | Clytia hemisphaerica | exon |
| TCONS_00024781-exon-sc0000510-1491911889:107959..109284 | TCONS_00024781-exon-sc0000510-1491911889:107959..109284 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000510 | supercontig | sc0000510:107959..110428 - |
Blast
The following BLAST results are available for this feature:
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