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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024720 ID=TCONS_00024720|Name=TCONS_00024720|organism=Clytia hemisphaerica|type=transcript|length=2730bpRun BLAST on NCBI protein sequence of TCONS_00024720-protein >TCONS_00024720-protein ID=TCONS_00024720-protein|Name=TCONS_00024720-protein|organism=Clytia hemisphaerica|type=polypeptide|length=660bp MGASESSLVLEQKVTEYEKCILVNSHSTSQCEDVFRLYNVPRVENEEKTERun BLAST on NCBI transcript from alignment at sc0000509:86599..99438+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024720 ID=TCONS_00024720|Name=TCONS_00024720|organism=Clytia hemisphaerica|type=transcript|length=12840bp|location=Sequence derived from alignment at sc0000509:86599..99438+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000509:86599..99438+ >TCONS_00024720 ID=TCONS_00024720|Name=TCONS_00024720|organism=Clytia hemisphaerica|type=CDS|length=21813bp|location=Sequence derived from alignment at sc0000509:86599..99438+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00024720 vs. Swiss-Prot (Human)
Match: PLPL9 (85/88 kDa calcium-independent phospholipase A2 OS=Homo sapiens GN=PLA2G6 PE=1 SV=2) HSP 1 Score: 253.062 bits (645), Expect = 3.629e-71 Identity = 163/480 (33.96%), Postives = 265/480 (55.21%), Query Frame = 3
Query: 732 SPIHVAIRLSQESVLKMLLEKGANHLIPCGHAYPAHLALQHESLGCLRILLKHDENCLKLQDKKYSGSLLHWAKNTDQIDVLTAYDMIDLNARNTAKETALHIMIKRQRLSPVISLISHGVNIDAQNKDGDTPLHFSVKEKDLDLTRALLILGADPSLKNKNGQTP----------------LESVDTSSTNYSDLNELFGMFDYEGKAVPGCLAQTEERTQ----------------------------SIYREKTGHLSLLTLDGGGIRGLILTEILLMIEHLAQEPIYNLFDWIXXXXXXXXXXXXXCRGRNIRHCQRAYLRLGRSCFTGIRPYSTELMDDFLLKEFGENTRMDSFSYPRLLIPAVMADRRPAMLHFFRNYDAPYDTHYQMRDARFP-----RPP-QCSDQKMWLAVRSSCSAPSYFRSTGRYLDGGLISNNPTLDAMAEINKYHK---HQKEENKLK---LVFSIG 2003
+P+H+A +L ++ ++++LL A I + YP H A++ GC +++ D + + +D +Y S LHWAKN + +L ++N+ ++A TALH+ + R R I L++HG N DA+ + G+TPLH ++ + ++++ +AL++ GA+ N G+TP L + T Y + G+ +G A P + ER Q S+ EK H LL LDGGG++GLI+ ++L+ IE + +LFDW++GTSTG L+ ++ +++ + + Y R+ F G RPY + +++FL +EFGE+T+M P++++ ++DR+PA LH FRNYDAP +R+ RF RPP Q SDQ +W A RSS +AP+YFR GR+LDGGL++NNPTLDAM EI++Y++ + + NK+K +V S+G
Sbjct: 222 TPLHLACQLGKQEMVRVLLLCNARCNIMGPNGYPIHSAMKFSQKGCAEMIISMDSSQIHSKDPRYGASPLHWAKNAEMARMLLKRG-CNVNSTSSAGNTALHVAVMRNRFDCAIVLLTHGANADARGEHGNTPLHLAMSKDNVEMIKALIVFGAEVDTPNDFGETPTFLASKIGRLVTRKAILTLLRTVGAEYC-FPPIHGVPAEQGSAAPH-HPFSLERAQPPPISLNNLELQDLMHISRARKPAFILGSMRDEKRTHDHLLCLDGGGVKGLIIIQLLIAIEKASGVATKDLFDWVAGTSTGGILALAILHSKSMAYMRGMYFRMKDEVFRGSRPYESGPLEEFLKREFGEHTKMTDVRKPKVMLTGTLSDRQPAELHLFRNYDAP----ETVREPRFNQNVNLRPPAQPSDQLVWRAARSSGAAPTYFRPNGRFLDGGLLANNPTLDAMTEIHEYNQDLIRKGQANKVKKLSIVVSLG 694 The following BLAST results are available for this feature:
BLAST of TCONS_00024720 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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