TCONS_00024709 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024709
Unique NameTCONS_00024709
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length599

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024709 ID=TCONS_00024709|Name=TCONS_00024709|organism=Clytia hemisphaerica|type=transcript|length=599bp
NTCTCGAGGTAAATCGATTTTTCTTCGATGTGCTCGGTTAATTGTTGGAG
GATAATTCTTTCAAAGACTTTTGACAAGATTGGCAAGATGCTGATTGGTC
TGTCGTCTGTCAAGGATTGGGGGTCGGTGACTTTGGGAACTGGGCAAATT
CGACTATTTTTCCATTCTTCTGGGAAGGTCGATGATTGGATACAGTTATT
GATGATATCGGTTAGAGGTGATGTGAGATATTGGGATACTGGCTTGATGA
ATTTTGAAGGGATGTTGTCGGGTCCGGTGGAACAATCTGATCTAAGTTTC
TGGATAGCTCTCGAAACTTCATCGTACGTAGCAGGACGGAGATGGAAGCT
GTCTGGATGANNNGTAGTTCTTCAATGAACGATTTTGAGAGGTCTCCTGC
ATTTCTTCCTGTTGTCCTCATGGCAGTTGAGTTGAAAAACTTGTTAATTT
CGTCTGGATCAACGCCCATGCGTTTTTGTCTGGGATGTAGTATTTTGTTG
ATGACTTTCCATGTTTCGGCTGAGGATTTGTTAGCTAGGAGGTTCttaag
aaatttctttttcgctCCTCGGATGGTCGATTTGAGGTTGTTCCTCANN
Run BLAST on NCBI

protein sequence of TCONS_00024709-protein

>TCONS_00024709-protein ID=TCONS_00024709-protein|Name=TCONS_00024709-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
XRNNLKSTIRGAKKKFLKNLLANKSSAETWKVINKILHPRQKRMGVDPDE
INKFFNSTAMRTTGRNAGDLSKSFIEELXXIQTASISVLLRTMKFRELSR
NLDQIVPPDPTTSLQNSSSQYPNISHHL
Run BLAST on NCBI

transcript from alignment at sc0000507:191811..192409

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024709 ID=TCONS_00024709|Name=TCONS_00024709|organism=Clytia hemisphaerica|type=transcript|length=599bp|location=Sequence derived from alignment at sc0000507:191811..192409 (Clytia hemisphaerica)
NNTGAGGAACAACCTCAAATCGACCATCCGAGGagcgaaaaagaaatttc
ttaaGAACCTCCTAGCTAACAAATCCTCAGCCGAAACATGGAAAGTCATC
AACAAAATACTACATCCCAGACAAAAACGCATGGGCGTTGATCCAGACGA
AATTAACAAGTTTTTCAACTCAACTGCCATGAGGACAACAGGAAGAAATG
CAGGAGACCTCTCAAAATCGTTCATTGAAGAACTACNNNTCATCCAGACA
GCTTCCATCTCCGTCCTGCTACGTACGATGAAGTTTCGAGAGCTATCCAG
AAACTTAGATCAGATTGTTCCACCGGACCCGACAACATCCCTTCAAAATT
CATCAAGCCAGTATCCCAATATCTCACATCACCTCTAACCGATATCATCA
ATAACTGTATCCAATCATCGACCTTCCCAGAAGAATGGAAAAATAGTCGA
ATTTGCCCAGTTCCCAAAGTCACCGACCCCCAATCCTTGACAGACGACAG
ACCAATCAGCATCTTGCCAATCTTGTCAAAAGTCTTTGAAAGAATTATCC
TCCAACAATTAACCGAGCACATCGAAGAAAAATCGATTTACCTCGAGAN

Coding sequence (CDS) from alignment at sc0000507:191811..192409

>TCONS_00024709 ID=TCONS_00024709|Name=TCONS_00024709|organism=Clytia hemisphaerica|type=CDS|length=387bp|location=Sequence derived from alignment at sc0000507:191811..192409 (Clytia hemisphaerica)
NTGAGGAACAACCTCAAATCGACCATCCGAGGagcgaaaaagaaatttct
taaGAACCTCCTAGCTAACAAATCCTCAGCCGAAACATGGAAAGTCATCA
ACAAAATACTACATCCCAGACAAAAACGCATGGGCGTTGATCCAGACGAA
ATTAACAAGTTTTTCAACTCAACTGCCATGAGGACAACAGGAAGAAATGC
AGGAGACCTCTCAAAATCGTTCATTGAAGAACTACNNNTCATCCAGACAG
CTTCCATCTCCGTCCTGCTACGTACGATGAAGTTTCGAGAGCTATCCAGA
AACTTAGATCAGATTGTTCCACCGGACCCGACAACATCCCTTCAAAATTC
ATCAAGCCAGTATCCCAATATCTCACATCACCTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013877XLOC_013877Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024709-proteinTCONS_00024709-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024709-exon-sc0000507-1491911889:191811..192409TCONS_00024709-exon-sc0000507-1491911889:191811..192409Clytia hemisphaericaexon
TCONS_00024709-exon-sc0000507-1510915933:191811..192409TCONS_00024709-exon-sc0000507-1510915933:191811..192409Clytia hemisphaericaexon
TCONS_00024709-exon-sc0000507-1575043694:191811..192409TCONS_00024709-exon-sc0000507-1575043694:191811..192409Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000507supercontigsc0000507:191811..192409 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.35099	0.775038	1.78578	2.20258	8.89001	8.269	5.82381	7.04928	2.67147	3.67507	1.69902	2.47569	11.2875	11.9025	3.66415	3.46063	1.97195	3.36523	12.0319	11.8304	2.60955	4.01832	0.998108	1.1722	3.63775	5.46362	26.9694	31.2322	4.39151	3.06479
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024709 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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