TCONS_00024708 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024708
Unique NameTCONS_00024708
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length503

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024708 ID=TCONS_00024708|Name=TCONS_00024708|organism=Clytia hemisphaerica|type=transcript|length=503bp
tCCTGAACCAAACAATTTAATATCCAGATTTAGGTTTTAATACGCTAATC
CTTTTTATATGAAAGCATGGGGGATGAAATATTGAAACATATAAAGAACA
TTTTCTGCAGATATAAGGATATGTTGAAGGATAAAAATAATGCATTTTAA
GAATAACAAAAGATACCGCTAACTTTGTGTTTGCCACCAGTTTTGGGATT
AAAGGAATAGATATTATTACTCGTGTAATGCATAACTGTTAGAATTACTT
TCAATATGCAATGATACAATGAATGAAATTAATTACTCTATATCCTAAAA
CTGGTGACAAGTCACAAAATTAACCGGAGATCTCATTTTGTTCCGGATTG
GTGAATATCatgacacccctgtttcacagacccggtgggacccctaCCCA
CTGGaaattcaggcccaaaaaatctTCCCCGGTGAACAAAAGCATAGCAA
CTGAAAAAAGGCTCatatccccattgaaaaatgtaaaaaatctttaaatc
ccC
Run BLAST on NCBI

transcript from alignment at sc0000507:182182..182684

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024708 ID=TCONS_00024708|Name=TCONS_00024708|organism=Clytia hemisphaerica|type=transcript|length=503bp|location=Sequence derived from alignment at sc0000507:182182..182684 (Clytia hemisphaerica)
GgggatttaaagattttttacatttttcaatggggatatGAGCCTTTTTT
CAGTTGCTATGCTTTTGTTCACCGGGGAagattttttgggcctgaatttC
CAGTGGGtaggggtcccaccgggtctgtgaaacaggggtgtcatGATATT
CACCAATCCGGAACAAAATGAGATCTCCGGTTAATTTTGTGACTTGTCAC
CAGTTTTAGGATATAGAGTAATTAATTTCATTCATTGTATCATTGCATAT
TGAAAGTAATTCTAACAGTTATGCATTACACGAGTAATAATATCTATTCC
TTTAATCCCAAAACTGGTGGCAAACACAAAGTTAGCGGTATCTTTTGTTA
TTCTTAAAATGCATTATTTTTATCCTTCAACATATCCTTATATCTGCAGA
AAATGTTCTTTATATGTTTCAATATTTCATCCCCCATGCTTTCATATAAA
AAGGATTAGCGTATTAAAACCTAAATCTGGATATTAAATTGTTTGGTTCA
GGa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013876XLOC_013876Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024708-exon-sc0000507-1491911889:182182..182684TCONS_00024708-exon-sc0000507-1491911889:182182..182684Clytia hemisphaericaexon
TCONS_00024708-exon-sc0000507-1510915933:182182..182684TCONS_00024708-exon-sc0000507-1510915933:182182..182684Clytia hemisphaericaexon
TCONS_00024708-exon-sc0000507-1575043694:182182..182684TCONS_00024708-exon-sc0000507-1575043694:182182..182684Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000507supercontigsc0000507:182182..182684 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.362018	0.23535	0	0.133673	0.488201	0.257189	0.155144	0.435731	0	0.377873	0	0.160735	0.240767	0.333385	0.0685219	0.147069	0	0.0928503	0.641388	0.134233	0.116673	0	0.276722	0	0	0	1.32373	0.17659	0.133937	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024708 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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