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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024705 ID=TCONS_00024705|Name=TCONS_00024705|organism=Clytia hemisphaerica|type=transcript|length=853bp
TGTCTCTCTTGTTCAGGTACTCTGTGAAGAAGAACTCAACCTATCGACGG
ATCAAGAAGAAGCCGACACTAAAGTGTTTCTGTGTGGAAAACATGCTGCT
CGTCAACATCTAGCCGAGCAAGTTTGCATCAAGACCGTCGACAGTAACAT
ATCGATTTATGCCATCTATTTCCAAGCCCATTTGAATGGAACAAAGTTGT
ACGTCAAGACTGGTTCGGGTGAGAATCTCCGAACCCTTTATATCACGGCC
ATTGCCAAGCATCTTGGAGAAGGTTGTTGTAAAGTGTTGCCAGCACTTCA
TGCTTTCACTGGCAATGACTATACCAGCGCTTTCCAAGGTATTGGGAAGG
TCAAAGCCATGAAACTGATCAAAGATTCAAAGAAAATCCGGAAAGTATTC
AAACGAATCGGTAAGAGCTTTGATTTTAATGTGAAGTACTTTCCCGTCAT
CGAGGAGTTTGTCTGCATGTTGTATGGTGAAAAAGGATGTACAAGCGTCA
ACGAGGCGAGATACACAAAATTCTTTTCCGCCAAAAATGGCAGCACCGAG
CCTAAAAAATTACCACCTACACGAGACGCACTTCTTCAACACTGCAAACG
CGTTTCGTACGTCACTGCAATCATCAAACGATCCTTGGAGAACAATCCCA
ATATTCCAGACCCTGATGGTTATGGTTGGTCGAGAAACGGTGACACACTT
AGTATCAAGTGAATGCTTCTCCCCCCCCAGCACCTCCGCAAATCCTGGAA
CAAACTTCGTGTAGCTGTAAGAAAGGGTGTAAGACCCGTTCCTGCTCTTG
CAGAGCCCACGGGATTAGTTGTACAGAGTTTTGCAGATGTAAAGGGTGCA
CAA Run BLAST on NCBI protein sequence of TCONS_00024705-protein >TCONS_00024705-protein ID=TCONS_00024705-protein|Name=TCONS_00024705-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
VSLVQVLCEEELNLSTDQEEADTKVFLCGKHAARQHLAEQVCIKTVDSNI
SIYAIYFQAHLNGTKLYVKTGSGENLRTLYITAIAKHLGEGCCKVLPALH
AFTGNDYTSAFQGIGKVKAMKLIKDSKKIRKVFKRIGKSFDFNVKYFPVI
EEFVCMLYGEKGCTSVNEARYTKFFSAKNGSTEPKKLPPTRDALLQHCKR
VSYVTAIIKRSLENNPNIPDPDGYGWSRNGDTLSIK Run BLAST on NCBI transcript from alignment at sc0000507:140180..141032 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024705 ID=TCONS_00024705|Name=TCONS_00024705|organism=Clytia hemisphaerica|type=transcript|length=853bp|location=Sequence derived from alignment at sc0000507:140180..141032 (Clytia hemisphaerica)
TTGTGCACCCTTTACATCTGCAAAACTCTGTACAACTAATCCCGTGGGCT
CTGCAAGAGCAGGAACGGGTCTTACACCCTTTCTTACAGCTACACGAAGT
TTGTTCCAGGATTTGCGGAGGTGCTGGGGGGGGAGAAGCATTCACTTGAT
ACTAAGTGTGTCACCGTTTCTCGACCAACCATAACCATCAGGGTCTGGAA
TATTGGGATTGTTCTCCAAGGATCGTTTGATGATTGCAGTGACGTACGAA
ACGCGTTTGCAGTGTTGAAGAAGTGCGTCTCGTGTAGGTGGTAATTTTTT
AGGCTCGGTGCTGCCATTTTTGGCGGAAAAGAATTTTGTGTATCTCGCCT
CGTTGACGCTTGTACATCCTTTTTCACCATACAACATGCAGACAAACTCC
TCGATGACGGGAAAGTACTTCACATTAAAATCAAAGCTCTTACCGATTCG
TTTGAATACTTTCCGGATTTTCTTTGAATCTTTGATCAGTTTCATGGCTT
TGACCTTCCCAATACCTTGGAAAGCGCTGGTATAGTCATTGCCAGTGAAA
GCATGAAGTGCTGGCAACACTTTACAACAACCTTCTCCAAGATGCTTGGC
AATGGCCGTGATATAAAGGGTTCGGAGATTCTCACCCGAACCAGTCTTGA
CGTACAACTTTGTTCCATTCAAATGGGCTTGGAAATAGATGGCATAAATC
GATATGTTACTGTCGACGGTCTTGATGCAAACTTGCTCGGCTAGATGTTG
ACGAGCAGCATGTTTTCCACACAGAAACACTTTAGTGTCGGCTTCTTCTT
GATCCGTCGATAGGTTGAGTTCTTCTTCACAGAGTACCTGAACAAGAGAG
ACA Coding sequence (CDS) from alignment at sc0000507:140180..141032 >TCONS_00024705 ID=TCONS_00024705|Name=TCONS_00024705|organism=Clytia hemisphaerica|type=CDS|length=711bp|location=Sequence derived from alignment at sc0000507:140180..141032 (Clytia hemisphaerica)
TCACTTGATACTAAGTGTGTCACCGTTTCTCGACCAACCATAACCATCAG
GGTCTGGAATATTGGGATTGTTCTCCAAGGATCGTTTGATGATTGCAGTG
ACGTACGAAACGCGTTTGCAGTGTTGAAGAAGTGCGTCTCGTGTAGGTGG
TAATTTTTTAGGCTCGGTGCTGCCATTTTTGGCGGAAAAGAATTTTGTGT
ATCTCGCCTCGTTGACGCTTGTACATCCTTTTTCACCATACAACATGCAG
ACAAACTCCTCGATGACGGGAAAGTACTTCACATTAAAATCAAAGCTCTT
ACCGATTCGTTTGAATACTTTCCGGATTTTCTTTGAATCTTTGATCAGTT
TCATGGCTTTGACCTTCCCAATACCTTGGAAAGCGCTGGTATAGTCATTG
CCAGTGAAAGCATGAAGTGCTGGCAACACTTTACAACAACCTTCTCCAAG
ATGCTTGGCAATGGCCGTGATATAAAGGGTTCGGAGATTCTCACCCGAAC
CAGTCTTGACGTACAACTTTGTTCCATTCAAATGGGCTTGGAAATAGATG
GCATAAATCGATATGTTACTGTCGACGGTCTTGATGCAAACTTGCTCGGC
TAGATGTTGACGAGCAGCATGTTTTCCACACAGAAACACTTTAGTGTCGG
CTTCTTCTTGATCCGTCGATAGGTTGAGTTCTTCTTCACAGAGTACCTGA
ACAAGAGAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024705-exon-sc0000507-1491911889:140180..141032 | TCONS_00024705-exon-sc0000507-1491911889:140180..141032 | Clytia hemisphaerica | exon |
| TCONS_00024705-exon-sc0000507-1510915933:140180..141032 | TCONS_00024705-exon-sc0000507-1510915933:140180..141032 | Clytia hemisphaerica | exon |
| TCONS_00024705-exon-sc0000507-1575043694:140180..141032 | TCONS_00024705-exon-sc0000507-1575043694:140180..141032 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000507 | supercontig | sc0000507:140180..141032 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR020045 | 5-3_exonuclease_C |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0003824 | catalytic activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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