TCONS_00024704 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024704
Unique NameTCONS_00024704
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length789

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024704 ID=TCONS_00024704|Name=TCONS_00024704|organism=Clytia hemisphaerica|type=transcript|length=789bp
CGCAACGTCATTCAAGGATGAGTTCTTCAAAATTCCCTACTGCccaaaaa
atgaatcaattatGAAAGCGAATTTACGAAAGTTCACTAACGAGAAAGTT
GAAATAGTTTATACTTGGAAAACCACGAAATTGAGAAGTTTGTTTGGCGT
GAAAGATAAAGTTTGTCATCCAAGTAATGTTATTTACAAAGGTGAATGTT
CTTGTAAAGCAGTCTACATTGGGGAAACTACCCGAAATGCTGAAACCAAG
ATGGAAGGAACACAATAGCGATTCAGGGAGATCAAAACCTTCAAAACATC
TAATCAAAAACCCAGACCATTCGTTTACTTGGAAAGTCATTAGCAAAGCC
CTGTCACTTGCAAGAAAAAANCAAAACATCTAATCAAAAACCCAGAACAT
TCGTTTACTTGGAAAGTCATTAGCAAAGCCCCGTCACTTGCaagaaaaag
gaagattttggaagcgtattttaTAATGACTTTAAAGCCATCAATTGATG
ATCAAAAAGACATTAAAAACTACAATTGTTTAGAAATGGTATTACCTAGA
GATTAATTTCCattatgttttttatttcatcaaTTCCCCAATGTGTTTTA
GCCATTTATTTACGATTTGTTGCCTCCTTTGAGAAttcttttacacgttt
tttttattagaacccagtttataagaacattcaggctgaaattcaacgaa
aaattaagaacatcgtaagaatatgcccagcctcagtttggaaaaaaatg
acaagaaactacaatttgttcctctttttaaacagcttt
Run BLAST on NCBI

transcript from alignment at sc0000507:125745..126533

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024704 ID=TCONS_00024704|Name=TCONS_00024704|organism=Clytia hemisphaerica|type=transcript|length=789bp|location=Sequence derived from alignment at sc0000507:125745..126533 (Clytia hemisphaerica)
aaagctgtttaaaaagaggaacaaattgtagtttcttgtcatttttttcc
aaactgaggctgggcatattcttacgatgttcttaatttttcgttgaatt
tcagcctgaatgttcttataaactgggttctaataaaaaaaacgtgtaaa
agaaTTCTCAAAGGAGGCAACAAATCGTAAATAAATGGCTAAAACACATT
GGGGAAttgatgaaataaaaaacataatGGAAATTAATCTCTAGGTAATA
CCATTTCTAAACAATTGTAGTTTTTAATGTCTTTTTGATCATCAATTGAT
GGCTTTAAAGTCATTAtaaaatacgcttccaaaatcttcctttttcttGC
AAGTGACGGGGCTTTGCTAATGACTTTCCAAGTAAACGAATGTTCTGGGT
TTTTGATTAGATGTTTTGNTTTTTTCTTGCAAGTGACAGGGCTTTGCTAA
TGACTTTCCAAGTAAACGAATGGTCTGGGTTTTTGATTAGATGTTTTGAA
GGTTTTGATCTCCCTGAATCGCTATTGTGTTCCTTCCATCTTGGTTTCAG
CATTTCGGGTAGTTTCCCCAATGTAGACTGCTTTACAAGAACATTCACCT
TTGTAAATAACATTACTTGGATGACAAACTTTATCTTTCACGCCAAACAA
ACTTCTCAATTTCGTGGTTTTCCAAGTATAAACTATTTCAACTTTCTCGT
TAGTGAACTTTCGTAAATTCGCTTTCataattgattcattttttggGCAG
TAGGGAATTTTGAAGAACTCATCCTTGAATGACGTTGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013872XLOC_013872Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024704-exon-sc0000507-1491911889:125745..126533TCONS_00024704-exon-sc0000507-1491911889:125745..126533Clytia hemisphaericaexon
TCONS_00024704-exon-sc0000507-1510915933:125745..126533TCONS_00024704-exon-sc0000507-1510915933:125745..126533Clytia hemisphaericaexon
TCONS_00024704-exon-sc0000507-1575043694:125745..126533TCONS_00024704-exon-sc0000507-1575043694:125745..126533Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000507supercontigsc0000507:125745..126533 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0611685	0.119946	0.139177	0	0.661113	0.588144	0.314895	0.0739235	0.154929	0.128123	0.124039	0.326564	0.0814718	0.0848716	0.104385	0.0745974	0.230089	0.708197	0.392533	0.0693355	1.71916	0.95902	0.0703571	0.574701	0.262967	0	0.0846085	0.362157	0.47583	0.276837
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024704 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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