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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024701 ID=TCONS_00024701|Name=TCONS_00024701|organism=Clytia hemisphaerica|type=transcript|length=1551bp
CAAACAGTGTTAAAAAAGCAAGTTTTGGAGACATCAACAACTaaacattc
tttttatttgaaacaaagtttaaaaattttctatgtGAGAGGATTTATGG
TTTGACTATACTGAAATGGTTTGTTGGCCTTTTGAGGTTCAGAAGGAAGG
GTGACATTCGGAGAAAAAACTTAATCAAACGAACTTTGGCCTTTTGAGGT
GAGCGAAGGTCATAAGTTTTGGTGCTAAAAAACTTTCACTTGCTTTATAT
CTCTGGTGAGGCGACATTTTGAGCATCTTTGAGATGGGAAATGTTCAACC
GAAGGCAAATACATctggaaagaaaacaaaaaagaaaaaaaaaagtaaaa
aggcAAAGGATAAGAAGAGTGGCAGCGTCAAAGGTGGAGATGTGGTGAAT
AACAATAGCCAAGACGTGGTAGATAGTTCCATCCTGAAACCATCAACAGA
AAATGTGACTTCTCCACAAGAGAATCACCAAGAAGCACCAAATCAAACTA
GTGAAGTTCAGATGAGACGCAAAAGCAGTGCAGAGACTTCTAACAGACGT
CAGAAGATCAGTTATGCTGGAGTTGGCGATTCAGTATTGGAGCTGTTTGA
AACAAGTGCCAGTAGACGAAGATCAAACCCTATCACCAGAAATGAGAATC
TCAATGTCACCAATAAAGGACAACGCGTGAGTAGTTATGGAGAAAGTCAG
TATAATAATTACCGTTCACGAGCGATGACTGACAGCCATGTTTACGGTAA
CGATAAATTGCAGACCAGATCAAGATCATTGACCACTTTAAAGAATAAGA
ATAAATTGAGATCGGACGAGCGGACGGCATCTAACGGCGTCAAATTGCGT
AATCGTCCAAAATCGAATAGCGAATACAATGAGTTTCGCCGTCGATCACT
TCCCGTGCACCTCCAAAAACAACTTCGAAAGGAGAGCCTAATGACAAATA
ATCGAAATTCTTTAAGTCAGAGTACAGTTAACTTACATGACTACCGTAAA
TTAAAAGTTCCATTCTTATTTCCGTTTAACAAAAAACTTTGTGTGAAGTT
AGTACCACCGAAAGATGGACCTGAATTGAAAGTTAGCACTCTAAAACACA
TCTTATTCCTGAGGCTTGAAACACAAGATCGGAAATTGGTTAAACGGACA
GGACAGCTATATAAAGCATCGATTTTGTTTACTGAAGGGAATTTACGAGA
AGTTGTGAATAGAGAGACGGGCCAAAAGGAGAAACGGTTGGTCCAAGCAC
AAATATGGTCCGGCTTATCACAAAGCGTTGAATTTGAAGACGATGTTGTC
CGTATTACGGGATATTTCATGTCCGGTACAAAAGGAATGATACCGTATTT
AGAATTCGAACTGGAACTAAAACcgaattttaaaaacatacggTCTGAAG
ATACAGGATATATTTTGTTTGCTGTTGGCGTATTTTCGTTTATTGATACG
AGATCGGTTGTGAATAAAATGATGCAATGGCATGCTGTCATTGAGAACTG
GAAACGAACAAATTTGAATTCTTCTAATGGTGGTGGCGGCAATACAGAAG
A Run BLAST on NCBI protein sequence of TCONS_00024701-protein >TCONS_00024701-protein ID=TCONS_00024701-protein|Name=TCONS_00024701-protein|organism=Clytia hemisphaerica|type=polypeptide|length=422bp
MGNVQPKANTSGKKTKKKKKSKKAKDKKSGSVKGGDVVNNNSQDVVDSSI
LKPSTENVTSPQENHQEAPNQTSEVQMRRKSSAETSNRRQKISYAGVGDS
VLELFETSASRRRSNPITRNENLNVTNKGQRVSSYGESQYNNYRSRAMTD
SHVYGNDKLQTRSRSLTTLKNKNKLRSDERTASNGVKLRNRPKSNSEYNE
FRRRSLPVHLQKQLRKESLMTNNRNSLSQSTVNLHDYRKLKVPFLFPFNK
KLCVKLVPPKDGPELKVSTLKHILFLRLETQDRKLVKRTGQLYKASILFT
EGNLREVVNRETGQKEKRLVQAQIWSGLSQSVEFEDDVVRITGYFMSGTK
GMIPYLEFELELKPNFKNIRSEDTGYILFAVGVFSFIDTRSVVNKMMQWH
AVIENWKRTNLNSSNGGGGNTE Run BLAST on NCBI transcript from alignment at sc0000507:39068..40618 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024701 ID=TCONS_00024701|Name=TCONS_00024701|organism=Clytia hemisphaerica|type=transcript|length=1551bp|location=Sequence derived from alignment at sc0000507:39068..40618 (Clytia hemisphaerica)
TCTTCTGTATTGCCGCCACCACCATTAGAAGAATTCAAATTTGTTCGTTT
CCAGTTCTCAATGACAGCATGCCATTGCATCATTTTATTCACAACCGATC
TCGTATCAATAAACGAAAATACGCCAACAGCAAACAAAATATATCCTGTA
TCTTCAGAccgtatgtttttaaaattcgGTTTTAGTTCCAGTTCGAATTC
TAAATACGGTATCATTCCTTTTGTACCGGACATGAAATATCCCGTAATAC
GGACAACATCGTCTTCAAATTCAACGCTTTGTGATAAGCCGGACCATATT
TGTGCTTGGACCAACCGTTTCTCCTTTTGGCCCGTCTCTCTATTCACAAC
TTCTCGTAAATTCCCTTCAGTAAACAAAATCGATGCTTTATATAGCTGTC
CTGTCCGTTTAACCAATTTCCGATCTTGTGTTTCAAGCCTCAGGAATAAG
ATGTGTTTTAGAGTGCTAACTTTCAATTCAGGTCCATCTTTCGGTGGTAC
TAACTTCACACAAAGTTTTTTGTTAAACGGAAATAAGAATGGAACTTTTA
ATTTACGGTAGTCATGTAAGTTAACTGTACTCTGACTTAAAGAATTTCGA
TTATTTGTCATTAGGCTCTCCTTTCGAAGTTGTTTTTGGAGGTGCACGGG
AAGTGATCGACGGCGAAACTCATTGTATTCGCTATTCGATTTTGGACGAT
TACGCAATTTGACGCCGTTAGATGCCGTCCGCTCGTCCGATCTCAATTTA
TTCTTATTCTTTAAAGTGGTCAATGATCTTGATCTGGTCTGCAATTTATC
GTTACCGTAAACATGGCTGTCAGTCATCGCTCGTGAACGGTAATTATTAT
ACTGACTTTCTCCATAACTACTCACGCGTTGTCCTTTATTGGTGACATTG
AGATTCTCATTTCTGGTGATAGGGTTTGATCTTCGTCTACTGGCACTTGT
TTCAAACAGCTCCAATACTGAATCGCCAACTCCAGCATAACTGATCTTCT
GACGTCTGTTAGAAGTCTCTGCACTGCTTTTGCGTCTCATCTGAACTTCA
CTAGTTTGATTTGGTGCTTCTTGGTGATTCTCTTGTGGAGAAGTCACATT
TTCTGTTGATGGTTTCAGGATGGAACTATCTACCACGTCTTGGCTATTGT
TATTCACCACATCTCCACCTTTGACGCTGCCACTCTTCTTATCCTTTgcc
tttttacttttttttttcttttttgttttctttccagATGTATTTGCCTT
CGGTTGAACATTTCCCATCTCAAAGATGCTCAAAATGTCGCCTCACCAGA
GATATAAAGCAAGTGAAAGTTTTTTAGCACCAAAACTTATGACCTTCGCT
CACCTCAAAAGGCCAAAGTTCGTTTGATTAAGTTTTTTCTCCGAATGTCA
CCCTTCCTTCTGAACCTCAAAAGGCCAACAAACCATTTCAGTATAGTCAA
ACCATAAATCCTCTCacatagaaaatttttaaactttgtttcaaataaaa
agaatgtttAGTTGTTGATGTCTCCAAAACTTGCTTTTTTAACACTGTTT
G Coding sequence (CDS) from alignment at sc0000507:39068..40618 >TCONS_00024701 ID=TCONS_00024701|Name=TCONS_00024701|organism=Clytia hemisphaerica|type=CDS|length=1266bp|location=Sequence derived from alignment at sc0000507:39068..40618 (Clytia hemisphaerica)
TTCTGTATTGCCGCCACCACCATTAGAAGAATTCAAATTTGTTCGTTTCC
AGTTCTCAATGACAGCATGCCATTGCATCATTTTATTCACAACCGATCTC
GTATCAATAAACGAAAATACGCCAACAGCAAACAAAATATATCCTGTATC
TTCAGAccgtatgtttttaaaattcgGTTTTAGTTCCAGTTCGAATTCTA
AATACGGTATCATTCCTTTTGTACCGGACATGAAATATCCCGTAATACGG
ACAACATCGTCTTCAAATTCAACGCTTTGTGATAAGCCGGACCATATTTG
TGCTTGGACCAACCGTTTCTCCTTTTGGCCCGTCTCTCTATTCACAACTT
CTCGTAAATTCCCTTCAGTAAACAAAATCGATGCTTTATATAGCTGTCCT
GTCCGTTTAACCAATTTCCGATCTTGTGTTTCAAGCCTCAGGAATAAGAT
GTGTTTTAGAGTGCTAACTTTCAATTCAGGTCCATCTTTCGGTGGTACTA
ACTTCACACAAAGTTTTTTGTTAAACGGAAATAAGAATGGAACTTTTAAT
TTACGGTAGTCATGTAAGTTAACTGTACTCTGACTTAAAGAATTTCGATT
ATTTGTCATTAGGCTCTCCTTTCGAAGTTGTTTTTGGAGGTGCACGGGAA
GTGATCGACGGCGAAACTCATTGTATTCGCTATTCGATTTTGGACGATTA
CGCAATTTGACGCCGTTAGATGCCGTCCGCTCGTCCGATCTCAATTTATT
CTTATTCTTTAAAGTGGTCAATGATCTTGATCTGGTCTGCAATTTATCGT
TACCGTAAACATGGCTGTCAGTCATCGCTCGTGAACGGTAATTATTATAC
TGACTTTCTCCATAACTACTCACGCGTTGTCCTTTATTGGTGACATTGAG
ATTCTCATTTCTGGTGATAGGGTTTGATCTTCGTCTACTGGCACTTGTTT
CAAACAGCTCCAATACTGAATCGCCAACTCCAGCATAACTGATCTTCTGA
CGTCTGTTAGAAGTCTCTGCACTGCTTTTGCGTCTCATCTGAACTTCACT
AGTTTGATTTGGTGCTTCTTGGTGATTCTCTTGTGGAGAAGTCACATTTT
CTGTTGATGGTTTCAGGATGGAACTATCTACCACGTCTTGGCTATTGTTA
TTCACCACATCTCCACCTTTGACGCTGCCACTCTTCTTATCCTTTgcctt
tttacttttttttttcttttttgttttctttccagATGTATTTGCCTTCG
GTTGAACATTTCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024701-exon-sc0000507-1491911889:39068..40618 | TCONS_00024701-exon-sc0000507-1491911889:39068..40618 | Clytia hemisphaerica | exon |
| TCONS_00024701-exon-sc0000507-1510915933:39068..40618 | TCONS_00024701-exon-sc0000507-1510915933:39068..40618 | Clytia hemisphaerica | exon |
| TCONS_00024701-exon-sc0000507-1575043694:39068..40618 | TCONS_00024701-exon-sc0000507-1575043694:39068..40618 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000507 | supercontig | sc0000507:39068..40618 . |
Blast
The following BLAST results are available for this feature:
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