TCONS_00024698 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024698
Unique NameTCONS_00024698
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length283

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024698 ID=TCONS_00024698|Name=TCONS_00024698|organism=Clytia hemisphaerica|type=transcript|length=283bp
TGACAAAAAATGTGATTTCAGGACCGATGCACATGGTTTCTGTCTTCTTA
ACATTTATCATAAGTCCGAAACGAATAGAGGTGAGATTGTAGGATGTAAG
AAGCGTTTGCAATCCAGGACCTGTATTGCTAGCGATGGCAATATCGTCGG
CGTATTGAGCTTCACGAAGATACTCAAGGAAGACCTTTGATTTTGCTTTA
AGTCTTCTCAAGTCGAAAAATTTGCCATCAGTTCGGAATCTGATCAGTAC
TGAGTGTTCGTGTTTGATGTCTTTGTAGGCAAC
Run BLAST on NCBI

transcript from alignment at sc0000507:25386..25668

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024698 ID=TCONS_00024698|Name=TCONS_00024698|organism=Clytia hemisphaerica|type=transcript|length=283bp|location=Sequence derived from alignment at sc0000507:25386..25668 (Clytia hemisphaerica)
GTTGCCTACAAAGACATCAAACACGAACACTCAGTACTGATCAGATTCCG
AACTGATGGCAAATTTTTCGACTTGAGAAGACTTAAAGCAAAATCAAAGG
TCTTCCTTGAGTATCTTCGTGAAGCTCAATACGCCGACGATATTGCCATC
GCTAGCAATACAGGTCCTGGATTGCAAACGCTTCTTACATCCTACAATCT
CACCTCTATTCGTTTCGGACTTATGATAAATGTTAAGAAGACAGAAACCA
TGTGCATCGGTCCTGAAATCACATTTTTTGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013866XLOC_013866Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024698-exon-sc0000507-1491911889:25386..25668TCONS_00024698-exon-sc0000507-1491911889:25386..25668Clytia hemisphaericaexon
TCONS_00024698-exon-sc0000507-1510915933:25386..25668TCONS_00024698-exon-sc0000507-1510915933:25386..25668Clytia hemisphaericaexon
TCONS_00024698-exon-sc0000507-1575043694:25386..25668TCONS_00024698-exon-sc0000507-1575043694:25386..25668Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000507supercontigsc0000507:25386..25668 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.951155	0.927526	2.15389	1.58044	2.56537	2.53399	0.61143	3.43448	0.80152	2.97844	4.81824	3.80078	4.42808	3.61319	5.40097	3.47764	5.71223	4.75707	4.54995	2.11608	3.67852	5.38276	3.81702	0.991492	0	1.82282	1.95633	2.08785	1.58356	1.0756
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024698 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top