TCONS_00024691 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024691
Unique NameTCONS_00024691
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1914

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024691 ID=TCONS_00024691|Name=TCONS_00024691|organism=Clytia hemisphaerica|type=transcript|length=1914bp
CTTTTTTAGCTATTAAAAACTAcgcacaaaaaaaaattatcaaaccaAAG
ATTCAATCAGCGAAAAGCATGTAATCAGTGTATGAAATCAACAAATATCT
CattacaaaatcaaagaaaacaacAAGGTTTTAATCGAGGAATAGATTTG
AGACTATGGGCAACGATCATTCATCATATAAAGTGCGTCCTGAAAAGCAG
TCAAAACATAAGGAGTGTGGGAAAGGGATTGATACGGACAGCCAAGTATG
TGGGCAGAAAATTGACACAGACCGACATTCGCCGAAAAAGAAAATGTCGA
CAGGAAGCAGCGAGAGCGGCTCACCGGTTAAAATGCTTCGGCGAAAATTG
TCACTGCCATCGATGCCGACGAGACGAAAAACGAGTACCGGCGACAGTAA
GCCGTTCTCTCGTAACCGAACTTTGTCGGATAAcgataaagaagaaaata
acaACGAAATACCACCGACGAAAAACGGAGTGAATGAGAAGTCGGGATCC
CCATCCATTGATCACGCCAAGCAGCGCCGATCACAATTCAAAGGCATTCG
ATATCAATCGGTACGCGGGACAAGTTTTGAACCAAAGTTGAATGCCAGTA
ACAAAAGCATGGCTTCTTCTCATACCAGTGTCGGGAGTTTCGGTCGAAAA
TCGACTAAGTCGGCGTTAGAGGAAGAGCTTGAGAAATTGAAGATTTCAAA
GAAAGGAAAGCGTATCGCGACTATTAAAGCTATGGAGTATGAATTATGGG
ATCCGTTCGAGATCGGGGATCGGAAAAGCATCACTTTTGCGTTGCATCCC
GATTTCGATGTTGATGATTCTCCGACGGAAGCAACGTGTCATTCGCTTAT
GTTAAATTTTCTTCACGTGCCAGATGATAAACTGGAAGAACGGATGCAGT
TGTTTGATTTCGAAATCAAATTTACCGAAGCGAAATTCTCATACGATAAA
GATGCACCAAACAGCAGTAAGTTGCTACGCGGACATACGTTTCTAGGAAT
GTCGCGTAACGTAAAAGTGACGGATGAACTTGCTCTGATTGAAGGTAATT
TCTATAATCCGGAATATGGGAAAATGGATTTCTTTCAATTCGAATTGGTT
TTGAGACCGGTCAAGTTGAGAGAGAAGGCGGATGATCTCGATAAGTCAGA
TACTGAAAACAATAATTTGAgcgaaaaacaaaaagaatcgAGACAAAAAA
TGAACATTAACGGAACTAATTGGGGcacgttttttatgaaagtacGTGGT
TCGTATAAATCAAAAGaatatttatttgatatttatGAAAGAAAAGCGAA
AAAGGACACATCTACCCaatcaaaacaacaagaaaatgaaaaattaagaa
caatcacCGAGGACTAATGAAAAGAAAGAACCATAAACCAACGCAAGTTA
TGACAATCATAATATCTAGgataagaaaaacttaaaaaatttttctaccT
TTTCAAATGCATTCCTGTCTCAGTGACTATGTGAAGACTTTTTTGCCAGT
GTGGATGCTGAGAGAATGTGAAGTCGTTAAAATTCAAATGGTAGATTGAA
ATCGCATGTTTTTAATAGATTAGAtggagttttcaaattttacttttaaa
atacaggtgattctaaaaatgaaaagtgtTTCCCTGGATTTCAATTGAGA
TTAAATTTCAGGTAATTTTTTCACTGAGGGAAATTTTTCGACtgattttt
tccagtggggatgggcaTTCTACCGGCTGTGATACATTTGGGGTTCAAAA
ATGTACTTATTAGTACATGTTTTCTGCAGCAGTTCAAGGAATCCGATATA
GACGTGGAAGATATCTTAGATCTTATTATTTATTAAACATTATATGGAAT
AATTGTAAATAGGAGTACACTGATCTATATAAagtaagaaaattattttc
aacgaCAGTCTAAT
Run BLAST on NCBI

protein sequence of TCONS_00024691-protein

>TCONS_00024691-protein ID=TCONS_00024691-protein|Name=TCONS_00024691-protein|organism=Clytia hemisphaerica|type=polypeptide|length=403bp
MGNDHSSYKVRPEKQSKHKECGKGIDTDSQVCGQKIDTDRHSPKKKMSTG
SSESGSPVKMLRRKLSLPSMPTRRKTSTGDSKPFSRNRTLSDNDKEENNN
EIPPTKNGVNEKSGSPSIDHAKQRRSQFKGIRYQSVRGTSFEPKLNASNK
SMASSHTSVGSFGRKSTKSALEEELEKLKISKKGKRIATIKAMEYELWDP
FEIGDRKSITFALHPDFDVDDSPTEATCHSLMLNFLHVPDDKLEERMQLF
DFEIKFTEAKFSYDKDAPNSSKLLRGHTFLGMSRNVKVTDELALIEGNFY
NPEYGKMDFFQFELVLRPVKLREKADDLDKSDTENNNLSEKQKESRQKMN
INGTNWGTFFMKVRGSYKSKEYLFDIYERKAKKDTSTQSKQQENEKLRTI
TED
Run BLAST on NCBI

transcript from alignment at sc0000507:43127..45100-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024691 ID=TCONS_00024691|Name=TCONS_00024691|organism=Clytia hemisphaerica|type=transcript|length=1974bp|location=Sequence derived from alignment at sc0000507:43127..45100- (Clytia hemisphaerica)
CTTTTTTAGCTATTAAAAACTACGCACAAAAAAAAATTATCAAACCAAAG
ATTCAATCAGCGAAAAGCATGTAATCAGTGTATGAAATCAACAAATATCT
CATTACAAAATCAAAGAAAACAACAAGGTTTTAATCGAGGAATAGATTTG
AGACTATGGGCAACGATCATTCATCATATAAAGTGCGTCCTGAAAAGCAG
TCAAAACATAAGGAGTGTGGGAAAGGGATTGATACGGACAGCCAAGTATG
TGGGCAGAAAATTGACACAGACCGACATTCGCCGAAAAAGAAAATGTCGA
CAGGAAGCAGCGAGAGCGGCTCACCGGTTAAAATGCTTCGGCGAAAATTG
TCACTGCCATCGATGCCGACGAGACGAAAAACGAGTACCGGCGACAGTAA
GCCGTTCTCTCGTAACCGAACTTTGTCGGATAACGATAAAGAAGAAAATA
ACAACGAAATACCACCGACGAAAAACGGAGTGAATGAGAAGTCGGGATCC
CCATCCATTGATCACGCCAAGCAGCGCCGATCACAATTCAAAGGCATTCG
ATATCAATCGGTACGCGGGACAAGTTTTGAACCAAAGTTGAATGCCAGTA
ACAAAAGCATGGCTTCTTCTCATACCAGTGTCGGGAGTTTCGGTCGAAAA
TCGACTAAGTCGGCGTTAGAGGAAGAGCTTGAGAAATTGAAGATTTCAAA
GAAAGGAAAGCGTATCGCGACTATTAAAGCTATGGAGTATGAATTATGGG
ATCCGTTCGAGATCGGGGATCGGAAAAGCATCACTTTTGCGTTGCATCCC
GATTTCGATGTTGATGATTCTCCGACGGAAGCAACGTGTCATTCGCTTAT
GTTAAATTTTCTTCACGTGCCAGATGATAAACTGGAAGAACGGATGCAGT
TGTTTGATTTCGAAATCAAATTTACCGAAGCGAAATTCTCATACGATAAA
GATGCACCAAACAGCAGTAAGTTGCTACGCGGACATACGTTTCTAGGAAT
GTCGCGTAACGTAAAAGTGACGGATGAACTTGCTCTGATTGAAGGTAATT
TCTATAATCCGGAATATGGCAAAATGGATTTNGATGAACTTGCTCTGATT
GAAGGTAATTTCTATAATCCGGAATATGGGAAAATGGATTTCTTTCAATT
CGAATTGGTTTTGAGACCGGTCAAGTTGAGAGAGAAGGCGGATGATCTCG
ATAAGTCAGATACTGAAAACAATAATTTGAGCGAAAAACAAAAAGAATCG
AGACAAAAAATGAACATTAACGGAACTAATTGGGGCACGTTTTTTATGAA
AGTACGTGGTTCGTATAAATCAAAAGAATATTTATTTGATATTTATGAAA
GAAAAGCGAAAAAGGACACATCTACCCAATCAAAACAACAAGAAAATGAA
AAATTAAGAACAATCACCGAGGACTAATGAAAAGAAAGAACCATAAACCA
ACGCAAGTTATGACAATCATAATATCTAGGATAAGAAAAACTTAAAAAAT
TTTTCTACCTTTTCAAATGCATTCCTGTCTCAGTGACTATGTGAAGACTT
TTTTGCCAGTGTGGATGCTGAGAGAATGTGAAGTCGTTAAAATTCAAATG
GTAGATTGAAATCGCATGTTTTTAATAGATTAGATGGAGTTTTCAAATTT
TACTTTTAAAATACAGGTGATTCTAAAAATGAAAAGTGTTTCCCTGGATT
TCAATTGAGATTAAATTTCAGGTAATTTTTTCACTGAGGGAAATTTTTCG
ACTGATTTTTTCCAGTGGGGATGGGCATTCTACCGGCTGTGATACATTTG
GGGTTCAAAAATGTACTTATTAGTACATGTTTTCTGCAGCAGTTCAAGGA
ATCCGATATAGACGTGGAAGATATCTTAGATCTTATTATTTATTAAACAT
TATATGGAATAATTGTAAATAGGAGTACACTGATCTATATAAAGTAAGAA
AATTATTTTCAACGACAGTCTAAT

Coding sequence (CDS) from alignment at sc0000507:43127..45100-

>TCONS_00024691 ID=TCONS_00024691|Name=TCONS_00024691|organism=Clytia hemisphaerica|type=CDS|length=2424bp|location=Sequence derived from alignment at sc0000507:43127..45100- (Clytia hemisphaerica)
GTAATTTCTATAATCCGGAATATGGGAAAATGGATTTCTTTCAATTCGAA
TTGGTTTTGAGACCGGTCAAGTTGAGAGAGAAGGCGGATGATCTCGATAA
GTCAGATACTGAAAACAATAATTTGAGCGAAAAACAAAAAGAATCGAGAC
AAAAAATGAACATTAACGGAACTAATTGGGGCACGTTTTTTATGAAAGTA
CGTGGTTCGTATAAATCAAAAGAATATTTATTTGATATTTATGAAAGAAA
AGCGAAAAAGGACACATCTACCCAATCAAAACAACAAGAAAATGAAAAAT
TAAGAACAATCACCGAGGACTAAATGGGCAACGATCATTCATCATATAAA
GTGCGTCCTGAAAAGCAGTCAAAACATAAGGAGTGTGGGAAAGGGATTGA
TACGGACAGCCAAGTATGTGGGCAGAAAATTGACACAGACCGACATTCGC
CGAAAAAGAAAATGTCGACAGGAAGCAGCGAGAGCGGCTCACCGGTTAAA
ATGCTTCGGCGAAAATTGTCACTGCCATCGATGCCGACGAGACGAAAAAC
GAGTACCGGCGACAGTAAGCCGTTCTCTCGTAACCGAACTTTGTCGGATA
ACGATAAAGAAGAAAATAACAACGAAATACCACCGACGAAAAACGGAGTG
AATGAGAAGTCGGGATCCCCATCCATTGATCACGCCAAGCAGCGCCGATC
ACAATTCAAAGGCATTCGATATCAATCGGTACGCGGGACAAGTTTTGAAC
CAAAGTTGAATGCCAGTAACAAAAGCATGGCTTCTTCTCATACCAGTGTC
GGGAGTTTCGGTCGAAAATCGACTAAGTCGGCGTTAGAGGAAGAGCTTGA
GAAATTGAAGATTTCAAAGAAAGGAAAGCGTATCGCGACTATTAAAGCTA
TGGAGTATGAATTATGGGATCCGTTCGAGATCGGGGATCGGAAAAGCATC
ACTTTTGCGTTGCATCCCGATTTCGATGTTGATGATTCTCCGACGGAAGC
AACGTGTCATTCGCTTATGTTAAATTTTCTTCACGTGCCAGATGATAAAC
TGGAAGAACGGATGCAGTTGTTTGATTTCGAAATCAAATTTACCGAAGCG
AAATTCTCATACGATAAAGATGCACCAAACAGCAGTAAGTTGCTACGCGG
ACATACGTTTCTAGGAATGTCGCGTAACGTAAAAGTGACGGATGAACTTG
CTCTGATTGAAGGTAATTTCTATAATCCGGAATATGGGAAAATGGATTTC
TTTCAATTCGAATTGGTTTTGAGACCGGTCAAGTTGAGAGAGAAGGCGGA
TGATCTCGATAAGTCAGATACTGAAAACAATAATTTGAGCGAAAAACAAA
AAGAATCGAGACAAAAAATGAACATTAACGGAACTAATTGGGGCACGTTT
TTTATGAAAGTACGTGGTTCGTATAAATCAAAAGAATATTTATTTGATAT
TTATGAAAGAAAAGCGAAAAAGGACACATCTACCCAATCAAAACAACAAG
AAAATGAAAAATTAAGAACAATCACCGAGGACTAAATGGGCAACGATCAT
TCATCATATAAAGTGCGTCCTGAAAAGCAGTCAAAACATAAGGAGTGTGG
GAAAGGGATTGATACGGACAGCCAAGTATGTGGGCAGAAAATTGACACAG
ACCGACATTCGCCGAAAAAGAAAATGTCGACAGGAAGCAGCGAGAGCGGC
TCACCGGTTAAAATGCTTCGGCGAAAATTGTCACTGCCATCGATGCCGAC
GAGACGAAAAACGAGTACCGGCGACAGTAAGCCGTTCTCTCGTAACCGAA
CTTTGTCGGATAACGATAAAGAAGAAAATAACAACGAAATACCACCGACG
AAAAACGGAGTGAATGAGAAGTCGGGATCCCCATCCATTGATCACGCCAA
GCAGCGCCGATCACAATTCAAAGGCATTCGATATCAATCGGTACGCGGGA
CAAGTTTTGAACCAAAGTTGAATGCCAGTAACAAAAGCATGGCTTCTTCT
CATACCAGTGTCGGGAGTTTCGGTCGAAAATCGACTAAGTCGGCGTTAGA
GGAAGAGCTTGAGAAATTGAAGATTTCAAAGAAAGGAAAGCGTATCGCGA
CTATTAAAGCTATGGAGTATGAATTATGGGATCCGTTCGAGATCGGGGAT
CGGAAAAGCATCACTTTTGCGTTGCATCCCGATTTCGATGTTGATGATTC
TCCGACGGAAGCAACGTGTCATTCGCTTATGTTAAATTTTCTTCACGTGC
CAGATGATAAACTGGAAGAACGGATGCAGTTGTTTGATTTCGAAATCAAA
TTTACCGAAGCGAAATTCTCATACGATAAAGATGCACCAAACAGCAGTAA
GTTGCTACGCGGACATACGTTTCTAGGAATGTCGCGTAACGTAAAAGTGA
CGGATGAACTTGCTCTGATTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013860XLOC_013860Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024691-proteinTCONS_00024691-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024691-exon-sc0000507-1575043694:44057..45100TCONS_00024691-exon-sc0000507-1575043694:44057..45100Clytia hemisphaericaexon
TCONS_00024691-exon-sc0000507-1575043694:43127..43996TCONS_00024691-exon-sc0000507-1575043694:43127..43996Clytia hemisphaericaexon
TCONS_00024691-exon-sc0000507-1510915933:44057..45100TCONS_00024691-exon-sc0000507-1510915933:44057..45100Clytia hemisphaericaexon
TCONS_00024691-exon-sc0000507-1510915933:43127..43996TCONS_00024691-exon-sc0000507-1510915933:43127..43996Clytia hemisphaericaexon
TCONS_00024691-exon-sc0000507-1491911889:44057..45100TCONS_00024691-exon-sc0000507-1491911889:44057..45100Clytia hemisphaericaexon
TCONS_00024691-exon-sc0000507-1491911889:43127..43996TCONS_00024691-exon-sc0000507-1491911889:43127..43996Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000507supercontigsc0000507:43127..45100 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0624242	0.0202911	0.02356	0.0460995	0.0841825	0.177392	0.160512	0.0751348	0.0350691	0.0434387	0	0	9.64563	7.38706	0.141786	0.0887589	1.24964	0.848559	17.2753	15.1609	1.62959	1.64859	0.644169	1.08452	0.64788	1.35582	0	0	0.069286	0.047061
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024691 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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