TCONS_00024675 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024675
Unique NameTCONS_00024675
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length759

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024675 ID=TCONS_00024675|Name=TCONS_00024675|organism=Clytia hemisphaerica|type=transcript|length=759bp
cagccCTTTGATATCTGAGAAACAGCGAGAAGAAAAAGAATCGATGAAAG
TGATCCAACAAAAACAGAACACAGCAGACATCGAACTCAAAGAGGCTAGA
AATAACTTAGATATGATCGAGCGACGTTTCGAACAAACAAAACGCCAAGC
GGATCAAGAAGAGAAATATCTGGCTCAACGATTGCTGGCACTGGCTAATG
AGCTGAAAGAACAACAGGAGAAGTTTTTGGAATCACAAGAGATTTACTCA
CATATGACAGAAATGGTTTCGGGCATACAAAACCAGCTAAAAACCAACGA
ACAATATGAAAAAGANTGGTTTCGGGCATACAAAACCAGTTAAAAACCAA
CGAACAATATGAAAAAGAACTAAGTACGTCCGTCTTTATATCTCATCAGC
AAATTGGTGCGAGTGTTTTGAATATTATGCAACGATGATACTAGTTTGGA
CTCTCaaaattatgtcatttttacCATTTGTTTATGATTTAACCAATGAG
ATTCAAAATAATATCTAATACCTGTTCCTCTATTGTGCTTGGACGAAGAA
TAGTTTTAACCTTCGAAAGCTTTTCCTCCTAACCTGTGAATTAATAACGC
TTCTTTATTGTTTAGACGAAAAGCTTGCAAAGACCAAAGATAAACAACGC
AGCTTGGAGCGCGAGGTTGAATCGCTGAAGATAAGAATACAAACAGAAGT
AGCCGAACACAAATCACTGGTGGACAAAAATAGCGACCTGGATAGAATCA
AAGCTGAAA
Run BLAST on NCBI

transcript from alignment at sc0000506:226624..229813-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024675 ID=TCONS_00024675|Name=TCONS_00024675|organism=Clytia hemisphaerica|type=transcript|length=3190bp|location=Sequence derived from alignment at sc0000506:226624..229813- (Clytia hemisphaerica)
CAGCCCTTTGATATCTGAGAAACAGCGAGAAGAAAAAGAATCGATGAAAG
TGATCCAACAAAAACAGAACACAGCAGACATCGAACTCAAAGAGGCTAGA
AATAACTTAGATATGATCGAGCGACGTTTCGAACAAACAAAACGCCAAGC
GGATCAAGAAGAGAAATATCTGGCTCAACGATTGCTGGCACTGGCTAATG
AGCTGAAAGAACAACAGTGTGTTGATTTCAAATTCGAAACAAAAGAAGCA
AAGTTGAAACAAGATTCGTTTTCTCCCTTCTCGTGTTCAAAGGAACTTTG
ATGTTGAATTTAAAGAGAAGCCCCTCGGGTTTTAAGTTAAGATACCCACT
TTTGAATTTCAATACGTTAAAAAGTTTTTCGTCAGACAACTTACACCATA
TTTGATGAAAGATATTTTTTAAACAGTGGCTGTCATTATCATTATACATG
TTCCCATATCGCTAAAAAGTGTTTTATGATTATATCTATGTTTTTAGGGA
GAAGTTTTTGGAATCACAAGAGATTTACTCACATATGACAGAAATGGTTT
CGGGCATACAAAACCAGCTAAAAACCAACGAACAATATGAAAAAGANTGG
TTTCGGGCATACAAAACCAGTTAAAAACCAACGAACAATATGAAAAAGAA
CTAAGTACGTCCGTCTTTATATCTCATCAGCAAATTGGTGCGAGTGTTTT
GAATATTATGCAACGATGATACTAGTTTGGACTCTCAAAATTATGTCATT
TTTACCATTTGTTTATGATTTAACCAATGAGATTCAAAATAATATCTAAT
ACCTGTTCCTCTATTGTGCTTGGACGAAGAATAGTTTTAACCTTCGAAAG
CTTTTCCTCCTAACCTGTGAATTAATAACGCTTCTTTATTGTTTAGACGA
AAAGCTTGCAAAGACCAAAGATAAACAACGCAGCTTGGAGCGCGAGGTAA
AACACTCCAGTAATTAGTTTCAATTTTTGGACCTACCTCCGGGTACCCCG
GTGGAGGTTCTATAAATTAACCCATGTCCGTTCGTTCGTCCGTCCGTCTG
TTACCAGCTTTTCTTAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGAAAATTCTTAT
TCGCCTTAAAAAACGGATTTTCGTATTTTTGGGGAAATTCCCTTTAACCA
AATAAGAAAATATAGTTTTTCTCAATGTTGACTCGTTATTTTTTTCTGAT
TTTTTGCACAATGATGCAAAATGGCAATGCCTAAAATGTGTCGGAGCCCG
ATTTTCGAAAAAATATATATTNNNNNNNNNNNNNNNNNAAAAAATATATA
TTTGGGCAAATTTGGGCCAAAAACTGCCTAAAAATAGGGTTTTTTGGACT
TTGTGCAAAATCCTGTCATTAATTTTTTCTGATTTTTTGTAATAAGATGG
AGGGCAAGATTCTCTAAAGAATGGCTGAAGTGGTTTTTCCTGGAAAATTC
TTATTCGCCTTAAAGGACGGATTTTCGTATTTTGGGGAAATTCCCTTTAA
CCAACTAAGAAAATATAGCTTTTCTCAATGTTAACTCATAATTTTTTTCT
GATTTTTTGCACAATGATGCAAAATGGCAATGCCCAAAATGTGACGGAGC
CAGATCTTTAAGGAAAATTTTTTTGGCCAAATTTGGGCCAAAAACAGCTT
AAAAGGTTTTTTGGGCCTGAATGGTTTAAGTGATTTTCGTATTCGGGGAA
ATTCCTTTTTACCATTTTACATTATTCAACACACAAGCTTTATTTTTCCA
TTCTGAATTTTTGTACAATTATTGTCACTTTTTTCTTATTTTCATCTGAT
GTTAATCATTAGGTAGGTCCATTCAGCATGTTGCTTGTTATGATATTATT
TTTATGATATTTTTTGATATGTAATCATTCAGAATATTTCCAAATCATCA
AGAAAACAATATGTTTGATTTCTTTCAGGTTTAATGATTGCAATTTTTTG
TGTGTCTCCAGAACTATTAATATATCTTTTAGTAGAAAAAAGGGTAGGTT
TTTGAGTTTAGATGTTACAAAGTTTATACATTTTCTTTCGCTGCAGGTTG
AATCGCTGAAGATAAGAATACAAACAGAAGTAGCCGAACACAAATCACTG
GTGGACAAAAATAGCGACCTGGATAGAATCAAAGCTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013846XLOC_013846Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024675-exon-sc0000506-1575043694:229598..229813TCONS_00024675-exon-sc0000506-1575043694:229598..229813Clytia hemisphaericaexon
TCONS_00024675-exon-sc0000506-1575043694:228868..229316TCONS_00024675-exon-sc0000506-1575043694:228868..229316Clytia hemisphaericaexon
TCONS_00024675-exon-sc0000506-1575043694:226624..226717TCONS_00024675-exon-sc0000506-1575043694:226624..226717Clytia hemisphaericaexon
TCONS_00024675-exon-sc0000506-1510915933:229598..229813TCONS_00024675-exon-sc0000506-1510915933:229598..229813Clytia hemisphaericaexon
TCONS_00024675-exon-sc0000506-1510915933:228868..229316TCONS_00024675-exon-sc0000506-1510915933:228868..229316Clytia hemisphaericaexon
TCONS_00024675-exon-sc0000506-1510915933:226624..226717TCONS_00024675-exon-sc0000506-1510915933:226624..226717Clytia hemisphaericaexon
TCONS_00024675-exon-sc0000506-1491911889:229598..229813TCONS_00024675-exon-sc0000506-1491911889:229598..229813Clytia hemisphaericaexon
TCONS_00024675-exon-sc0000506-1491911889:228868..229316TCONS_00024675-exon-sc0000506-1491911889:228868..229316Clytia hemisphaericaexon
TCONS_00024675-exon-sc0000506-1491911889:226624..226717TCONS_00024675-exon-sc0000506-1491911889:226624..226717Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000506supercontigsc0000506:226624..229813 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.28803	1.11114	0.789278	1.31538	0.453903	0.309044	0.891264	1.46895	0.354267	0.299937	0.929871	0.967811	0.902176	0.332166	0.838171	0.751922	0.741699	0.536214	1.30747	0.426998	1.13554	1.08761	1.02239	1.48751	0	0	2.46966	1.56912	0.927749	1.09572
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024675 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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