TCONS_00024661 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024661
Unique NameTCONS_00024661
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length579

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024661 ID=TCONS_00024661|Name=TCONS_00024661|organism=Clytia hemisphaerica|type=transcript|length=579bp
gaaaaagttttttcttctgGCTGAAAGGAAGCAAGAAGGAGAATAAACAA
CACTTTTGAAACAttatttagaaaagaaaaatgactTTCGAGAATTATTT
GAATATTTCGACCACATCATTTGTAAATTCTTTGAACAATAATCAGACAC
TTTGGCTTGATGGAGATTGTGATCCAACGAAAGCCAATTGTCATGGATAT
ATTCGAAAAATGATCAGCTTTTATAAAACGACAGGGGGATGGATAATGCT
TGGGATTGTGCTTTGTGGGATTGGTTGTATGATCTTCACCTTCGTTCAAA
ACTGTCTCATGAATCGTTCACGAACACAACTCAGAACCACCGTCGATGGT
CAGCGCATCATTGCATGGAAGAATCGACATGAAATTGGGAAATTATCAAA
AGGACCTATACGAAAAGTCAATGTTTATAATGGGTTTATAGGCTTTGATG
AATGTGATGAAGTCAAAGCAAGGACTATCATTGAATCGCAATCTCTCGTT
TGACGATGCAAAACCCAGCAGCCTCCGTTGGGTTAAATATGGCTTTTGGT
ACTTTCCTGATGACGTACATagggaaatt
Run BLAST on NCBI

protein sequence of TCONS_00024661-protein

>TCONS_00024661-protein ID=TCONS_00024661-protein|Name=TCONS_00024661-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
MTFENYLNISTTSFVNSLNNNQTLWLDGDCDPTKANCHGYIRKMISFYKT
TGGWIMLGIVLCGIGCMIFTFVQNCLMNRSRTQLRTTVDGQRIIAWKNRH
EIGKLSKGPIRKVNVYNGFIGFDECDEVKARTIIESQSLV
Run BLAST on NCBI

transcript from alignment at sc0000506:146621..147668-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024661 ID=TCONS_00024661|Name=TCONS_00024661|organism=Clytia hemisphaerica|type=transcript|length=1048bp|location=Sequence derived from alignment at sc0000506:146621..147668- (Clytia hemisphaerica)
GAAAAAGTTTTTTCTTCTGGCTGAAAGGAAGCAAGAAGGAGAATAAACAA
CACTTTTGAAACATTATTTAGAAAAGAAAAATGACTTTCGAGAATTATTT
GAATATTTCGACCACATCATTTGTAAATTCTTTGAACAATAATCAGACAC
TTTGGCTTGATGGAGATTGTGATCCAACGAAAGCCAATTGTCATGGATAT
ATTCGAAAAATGATCAGCTTTTATAAAACGGTAAAGTTTTCTCGCTTTAG
GAGTGTATTAAACAAAATTTCTAGAGATTATGGTAGTAATCCGAANGTTT
TTTCGCTTTACGAGTGTACTAAACAAAATTTCTAGAGATTATGGTAGCAT
GGTAGTAATCCGAAAGATTCAACTCGAAAATATGTCCCTTTTGATGAAAA
TTGATATTTTGAAACTTCGTTGATTAGATTTCGAAATTAATCAATTTTCT
TTTACCTCATTCATAAAATGAGGTACCTCCCCCATTGATCTGTATAAATG
AGGGCATTTATAAGAATTGTAGCAAAATTCTGCTGAGGCTCGACTGTTCT
TATTTTTATCTGCTAAAATCCAAGTCTGGTATTGTTCTTAATTTTTTTTT
TTCGGTTTTGGAAAAAATTGAGCCTATTTTTCTTAAAAATACGTGTTTTC
TTAAAAATAATATTCCACCCAATTTTACCCGTTTTTTTCTCGTTGACAGA
CAGGGGGATGGATAATGCTTGGGATTGTGCTTTGTGGGATTGGTTGTATG
ATCTTCACCTTCGTTCAAAACTGTCTCATGAATCGTTCACGAACACAACT
CAGAACCACCGTCGATGGTCAGCGCATCATTGCATGGAAGAATCGACATG
AAATTGGGAAATTATCAAAAGGACCTATACGAAAAGTCAATGTTTATAAT
GGGTTTATAGGCTTTGATGAATGTGATGAAGTCAAAGCAAGGACTATCAT
TGAATCGCAATCTCTCGTTTGACGATGCAAAACCCAGCAGCCTCCGTTGG
GTTAAATATGGCTTTTGGTACTTTCCTGATGACGTACATAGGGAAATT

Coding sequence (CDS) from alignment at sc0000506:146621..147668-

>TCONS_00024661 ID=TCONS_00024661|Name=TCONS_00024661|organism=Clytia hemisphaerica|type=CDS|length=846bp|location=Sequence derived from alignment at sc0000506:146621..147668- (Clytia hemisphaerica)
ACAGGGGGATGGATAATGCTTGGGATTGTGCTTTGTGGGATTGGTTGTAT
GATCTTCACCTTCGTTCAAAACTGTCTCATGAATCGTTCACGAACACAAC
TCAGAACCACCGTCGATGGTCAGCGCATCATTGCATGGAAGAATCGACAT
GAAATTGGGAAATTATCAAAAGGACCTATACGAAAAGTCAATGTTTATAA
TGGGTTTATAGGCTTTGATGAATGTGATGAAGTCAAAGCAAGGACTATCA
TTGAATCGCAATCTCTCGTTTGAATGACTTTCGAGAATTATTTGAATATT
TCGACCACATCATTTGTAAATTCTTTGAACAATAATCAGACACTTTGGCT
TGATGGAGATTGTGATCCAACGAAAGCCAATTGTCATGGATATATTCGAA
AAATGATCAGCTTTTATAAAACGACAGGGGGATGGATAATGCTTGGGATT
GTGCTTTGTGGGATTGGTTGTATGATCTTCACCTTCGTTCAAAACTGTCT
CATGAATCGTTCACGAACACAACTCAGAACCACCGTCGATGGTCAGCGCA
TCATTGCATGGAAGAATCGACATGAAATTGGGAAATTATCAAAAGGACCT
ATACGAAAAGTCAATGTTTATAATGGGTTTATAGGCTTTGATGAATGTGA
TGAAGTCAAAGCAAGGACTATCATTGAATCGCAATCTCTCGTTTGAATGA
CTTTCGAGAATTATTTGAATATTTCGACCACATCATTTGTAAATTCTTTG
AACAATAATCAGACACTTTGGCTTGATGGAGATTGTGATCCAACGAAAGC
CAATTGTCATGGATATATTCGAAAAATGATCAGCTTTTATAAAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013842XLOC_013842Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024661-proteinTCONS_00024661-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024661-exon-sc0000506-1575043694:147439..147668TCONS_00024661-exon-sc0000506-1575043694:147439..147668Clytia hemisphaericaexon
TCONS_00024661-exon-sc0000506-1575043694:146621..146969TCONS_00024661-exon-sc0000506-1575043694:146621..146969Clytia hemisphaericaexon
TCONS_00024661-exon-sc0000506-1510915933:147439..147668TCONS_00024661-exon-sc0000506-1510915933:147439..147668Clytia hemisphaericaexon
TCONS_00024661-exon-sc0000506-1510915933:146621..146969TCONS_00024661-exon-sc0000506-1510915933:146621..146969Clytia hemisphaericaexon
TCONS_00024661-exon-sc0000506-1491911889:147439..147668TCONS_00024661-exon-sc0000506-1491911889:147439..147668Clytia hemisphaericaexon
TCONS_00024661-exon-sc0000506-1491911889:146621..146969TCONS_00024661-exon-sc0000506-1491911889:146621..146969Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000506supercontigsc0000506:146621..147668 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.129711	0.512569	9.74485	9.49982	8.5861	5.72488	2.85218	5.87961	0.192779	0.133451	0.10907	0	2.19626	1.2807	0.718355	0.108474	3.06601	1.51396	0.780618	1.33869	1.04173	2.36021	0.406695	0.420952	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024661 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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