TCONS_00024626 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024626
Unique NameTCONS_00024626
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1610

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024626 ID=TCONS_00024626|Name=TCONS_00024626|organism=Clytia hemisphaerica|type=transcript|length=1610bp
ataattctttttcagAATAAATAACATTGGATAAAAGTAGATTATTTTAA
AGAGAAAGCAAGATGGTGAAGATTACTCAAGATATGCTTGTCAAATATGC
AAGTCATTCTAAAAAGAGGTCAAACGAAAGTAACATCCAGTACTTGAAAC
GATTGACTCACATTTATTTCCAAGAAAAGAATATTGACCAAATTGATGGT
TTGAATGAATGCAAGAATCTTTCAGTTCTTTACCTCTACGACAACAATAT
TGAAGTGATCAAAAATTTGAGCTTTGCTGCAAACTTGACACATCTTTATC
TACAAAAGAATTGTATTAATCGAATATCTGGATTGGAGCACCTTCCACAA
CTTAATAAATTaTATTTGGGACAAAATCAAATCACAGTTGTAGAAGGATT
GGACAAGAACAAGAGCTTGACAGAGCTTCATATAGAATACCAAGAACTAC
CCGAAGGAGAGAAACTACTCTTCGACCCGCGAACTATTGAATCACTTTCA
tcATCGCTAGAAGTATTAGATGTTAGTGGAAACAATTTGGATGAATTGAG
TGATCTGAAGATCTTACGATTTCTTGACAATTTACGCATAAAAGATAATG
ATTTGGATAGCTGGCATGATCTCTCTGAATGTTTATTCGAATGGAAAAGA
TTACGTAATCTTGATATGAATGGCAATCCGATTTGCTCACATAAAAAATT
CAGGGATAAACTGATCATCATTTCAAAATCGTTAGACATGATCAATGAGA
AAGAAGTCAGCAATTCCACTCGACAATTCCTCGAAAATTGGTACGCCAAT
AAAGAAGCGAAAAAGCAAATACGAAAGCAATCAAAAGATCGTTCAAATAG
TATCGACGTCATGCATAACTCCGCACTTGATGCTAGGTACCCCTATTCTG
CAGACTCCGTTTATGATGCAGGTAGCTTAGTAGCAGAGCAGCTCCCAAAC
AGTAAACACTTGTTGAGGCATCATAAACAATTTGTTGAGGTGTTAGCGAA
AGCCAGACGGAAACCTTTACCGCCACTCGAACAGCGATCAATACCGAGAT
ATTCATCACCTGCGTCAGCAAGTTTAGTTGAACGCACAATGCATGATGGG
AAACAGTACAGAGAAAGTTCCGTCAGATAAACAAAACATTCATGCCTCAT
CTACTACGAGCAGCAGAAAGATTCTCCCAGGAGATGGATAAAATTAGAAC
GCTCTTAAGATTGAATAGCGTTTTGCTTTCCCGGGGACAGGTTTTATCCT
AAAAAGTTGcttctaaaattgaaatttggttCAGAGATCTTTCATTTGTC
TATTTTGAAGATCCATTATGCAAGACTGAATTAGAAATCTTAAAAGAACA
TCTATTTTTAAAGATTACAAAACTACAAAacgagaaaatcttttaaagaa
TTCGCGCCAATTTTAATCATAAAATGtaaatattctaatttatttttaaa
agtttaattttttacgTTAAATTCCTTGTATATTTTATACGCCAGTTATA
ATGTGCTCAATGCTGAAGTCAGAgactttgataaaaaatatagcaaaatc
tTGGTCAGGGTCAATTCTATGAAAGTTATTTTATCAAATGACATATCTTG
TAAAGGGAAG
Run BLAST on NCBI

protein sequence of TCONS_00024626-protein

>TCONS_00024626-protein ID=TCONS_00024626-protein|Name=TCONS_00024626-protein|organism=Clytia hemisphaerica|type=polypeptide|length=355bp
MVKITQDMLVKYASHSKKRSNESNIQYLKRLTHIYFQEKNIDQIDGLNEC
KNLSVLYLYDNNIEVIKNLSFAANLTHLYLQKNCINRISGLEHLPQLNKL
YLGQNQITVVEGLDKNKSLTELHIEYQELPEGEKLLFDPRTIESLSSSLE
VLDVSGNNLDELSDLKILRFLDNLRIKDNDLDSWHDLSECLFEWKRLRNL
DMNGNPICSHKKFRDKLIIISKSLDMINEKEVSNSTRQFLENWYANKEAK
KQIRKQSKDRSNSIDVMHNSALDARYPYSADSVYDAGSLVAEQLPNSKHL
LRHHKQFVEVLAKARRKPLPPLEQRSIPRYSSPASASLVERTMHDGKQYR
ESSVR
Run BLAST on NCBI

transcript from alignment at sc0000506:137642..140860+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024626 ID=TCONS_00024626|Name=TCONS_00024626|organism=Clytia hemisphaerica|type=transcript|length=3219bp|location=Sequence derived from alignment at sc0000506:137642..140860+ (Clytia hemisphaerica)
ataattctttttcagAATAAATAACATTGGATAAAAGTAGATTATTTTAA
AGAGAAAGCAAGATGGTGAAGATTACTCAAGATATGCTTGTCAAATATGC
AAGTCATTCTAAAAAGAGGTCAAACGAAAGTAACATCCAGTACTTGAAAC
GATTGACTCACATTTATTTCCAAGAAAAGAATATTGACCAAATTGTAAGT
TTTCTTGTTTGAATTTAATCCGCACGGCTCTCTCTCTATTTTTGGTGCAT
CTTAATTAGATGGTGAAACTTCTGTGGTATTATTTTGGCCTTACTTTTTT
ACAAAGTTAAGATtagaagatttcaaatttttacacaGTTTATACATTAA
AgttttctaactgttttctttgccttttttcaagtcaaaaactGGTAACT
TGTAACTTGGATAACTTGTAACTTGTACTGTGCTCGGGAACATGAAAGGA
TTTCACAGGCCAAagatctcaaaccatctgattatccctttaaagtaACA
CAACTTGACACCACATATTCttacatttatttttgtctttcaAGGATGGT
TTGAATGAATGCAAGAATCTTTCAGTTCTTTACCTCTACGACAACAATAT
TGAAGTGATCAAAAATTTGAGCTTTGCTGCAAACTTGACACATCTTTATC
TACAAAAGAATTGTATTAATCGAATATCTGGATTGGAGCACCTTCCACAA
CTTAATAAATTGTAAATAGACTATTGAATAGCTTGCAGAAGAATCGAAAA
GATTTTTATCCGGTAGTTTCGGTGGTTCTTTTGCTTATTATGTTTGAAGT
CGATTTTTTAAAGTCATGTATTTTCAATCTTTTGAATTGGAGATTTatga
attgattttcttttttctttctttgaagaTATTTGGGACAAAATCAAATC
ACAGTTGTAGAAGGATTGGACAAGAACAAGAGCTTGACAGAGCTTCATAT
AGAATACCAAGAACTACCCGAAGGAGAGAAACTACTCTTCGACCCGCGAA
CTATTGAATCACTTTCAGTAAGTAACTACTTTGTACGGCAGAACGTCAAA
AAATCATGATGTgatattttattgtaaattaGCCAGTCGACGGCAAGGCA
ACTTGTAAGTTCTGATACACAATACAGTGATCACAAAATACTACTGTata
aattgaattttcaaaaatttttcagtcATCGCTAGAAGTATTAGATGTTA
GTGGAAACAATTTGGATGAATTGAGTGATCTGAAGATCTTACGATTTCTT
GACAATTTACGCATAAAAGATAATGATTTGGATAGCTGGCATGATCTCTC
TGAATGTTTATTCGAATGGAAAAGATTACGTAATCTTGATATGAATGGCA
ATCCGATTTGCTCACATAAAAAATTCAGGGATAAACTGATCATCATTTCA
AAATCGTTAGGTATATTTCCTCTCAATGGACTATATAGATGACTAAGTCA
TAGCTTGTTGGGTAGCTTAATGTTTCTTCCTTCTTTTGGACGCTTTGTTT
TAGAAACGGGTGGATGGGAGGTGGCTGTCGacattaatttttgcatgaac
tttttttttcgcgaattgagaatctaaatttttacgtggaagaaattttg
tcaatCGGCCTCTATTTTACCTAACCTTTCACTTTCGTAGTATGGCAAAC
ActaggattttaaaattttccctaGGTTTAATTTTCgcaaaagtcaccaa
aattaaTAGACGCTAAATTTAATCCACTTGGTAAATTTTCGTTCTTAGGA
ATAGCGGGCACAGTACTAGACCAGCCATCTAGTTACCTTGCCCAATTAAG
ATAAGGAAATTAATAACTTGTCAAATTGAGAATGAAATCAGTTGGCCTTC
GTCCATACTCTATAAAGTATTAGAATGTCGATTCTTTCTTCAGACATGAT
CAATGAGAAAGAAGTCAGCAATTCCACTCGACAATTCCTCGAAAATTGGT
ACGCCAATAAAGAAGCGAAAAAGCAAATACGAAAGCAATCAAAAGATCGT
TCAAATAGTATCGACGTCATGCATAACTCCGCACTTGATGCTAGGTACCC
CTATTCTGCAGACTCCGTTTATGATGCAGGTAGCTTAGTAGCAGAGCAGC
TCCCAAACAGTAAACACTTGTTGAGGCATCATAAACAATTTGTTGAGGTG
TTAGCGAAAGCCAGACGGAAACCTTTACCGCCACTCGAACAGCGATCAAT
ACCGAGGTTTGTGCTTTTGAAATAGAGTCTACGGAGGATCCTTTCAATAA
TATCTGGTGTTTTTAAAATACTTTACTTTATTGAtacattacacccctgt
ctccgtGCCCCGGTGACAATTGAAATAGTAATCATTCTACAAGATTCGCT
TAGATCAGCATCATCTTACTATTCACAAACAGATTTTGTTATTACTACAA
CCACTTTTCTTTGTTCATTTAAAAATCAGAGGGTGTTTACTTTCAATTTT
GACTTGACCCTCGTTTTAAGCGTTGTATCAAGCTTAGACGAATATTCTCT
AGTTAACTAAGTTCAAGCGAGTTATTTGATACGATTAATTAAACTCTCTT
CGGAAACAATAAAATCTGGAAGACTTTTTCAGAACATTCGATAATGAAAT
ACACAGTGTAGCCACTAGGATATCACAGTACACAAAttttatgtttcact
ttttcagATATTCATCACCTGCGTCAGCAAGTTTAGTTGAACGCACAATG
CATGATGGGAAACAGTACAGAGAAAGTTCCGTCAGATAAACAAAACATTC
ATGCCTCATCTACTACGAGCAGCAGAAAGATTCTCCCAGGAGATGGATAA
AATTAGAACGCTCTTAAGATTGAATAGCGTTTTGCTTTCCCGGGGACAGG
TTTTATCCTAAAAAGTTGcttctaaaattgaaatttggttCAGAGATCTT
TCATTTGTCTATTTTGAAGATCCATTATGCAAGACTGAATTAGAAATCTT
AAAAGAACATCTATTTTTAAAGATTACAAAACTACAAAacgagaaaatct
tttaaagaaTTCGCGCCAATTTTAATCATAAAATGtaaatattctaattt
atttttaaaagtttaattttttacgTTAAATTCCTTGTATATTTTATACG
CCAGTTATAATGTGCTCAATGCTGAAGTCAGAgactttgataaaaaatat
agcaaaatctTGGTCAGGGTCAATTCTATGAAAGTTATTTTATCAAATGA
CATATCTTGTAAAGGGAAG

Coding sequence (CDS) from alignment at sc0000506:137642..140860+

>TCONS_00024626 ID=TCONS_00024626|Name=TCONS_00024626|organism=Clytia hemisphaerica|type=CDS|length=6408bp|location=Sequence derived from alignment at sc0000506:137642..140860+ (Clytia hemisphaerica)
ATGGTGAAGATTACTCAAGATATGCTTGTCAAATATGCAAGTCATTCTAA
AAAGAGGTCAAACGAAAGTAACATCCAGTACTTGAAACGATTGACTCACA
TTTATTTCCAAGAAAAGAATATTGACCAAATTGATGGTTTGAATGAATGC
AAGAATCTTTCAGTTCTTTACCTCTACGACAACAATATTGAAGTGATCAA
AAATTTGAGCTTTGCTGCAAACTTGACACATCTTTATCTACAAAAGAATT
GTATTAATCGAATATCTGGATTGGAGCACCTTCCACAACTTAATAAATTa
TATTTGGGACAAAATCAAATCACAGTTGTAGAAGGATTGGACAAGAACAA
GAGCTTGACAGAGCTTCATATAGAATACCAAGAACTACCCGAAGGAGAGA
AACTACTCTTCGACCCGCGAACTATTGAATCACTTTCAtcATCGCTAGAA
GTATTAGATGTTAGTGGAAACAATTTGGATGAATTGAGTGATCTGAAGAT
CTTACGATTTCTTGACAATTTACGCATAAAAGATAATGATTTGGATAGCT
GGCATGATCTCTCTGAATGTTTATTCGAATGGAAAAGATTACGTAATCTT
GATATGAATGGCAATCCGATTTGCTCACATAAAAAATTCAGGGATAAACT
GATCATCATTTCAAAATCGTTAGACATGATCAATGAGAAAGAAGTCAGCA
ATTCCACTCGACAATTCCTCGAAAATTGGTACGCCAATAAAGAAGCGAAA
AAGCAAATACGAAAGCAATCAAAAGATCGTTCAAATAGTATCGACGTCAT
GCATAACTCCGCACTTGATGCTAGGTACCCCTATTCTGCAGACTCCGTTT
ATGATGCAGGTAGCTTAGTAGCAGAGCAGCTCCCAAACAGTAAACACTTG
TTGAGGCATCATAAACAATTTGTTGAGGTGTTAGCGAAAGCCAGACGGAA
ACCTTTACCGCCACTCGAACAGCGATCAATACCGAGATATTCATCACCTG
CGTCAGCAAGTTTAGTTGAACGCACAATGCATGATGGGAAACAGTACAGA
GAAAGTTCCGTCAGATAAATGGTGAAGATTACTCAAGATATGCTTGTCAA
ATATGCAAGTCATTCTAAAAAGAGGTCAAACGAAAGTAACATCCAGTACT
TGAAACGATTGACTCACATTTATTTCCAAGAAAAGAATATTGACCAAATT
GATGGTTTGAATGAATGCAAGAATCTTTCAGTTCTTTACCTCTACGACAA
CAATATTGAAGTGATCAAAAATTTGAGCTTTGCTGCAAACTTGACACATC
TTTATCTACAAAAGAATTGTATTAATCGAATATCTGGATTGGAGCACCTT
CCACAACTTAATAAATTaTATTTGGGACAAAATCAAATCACAGTTGTAGA
AGGATTGGACAAGAACAAGAGCTTGACAGAGCTTCATATAGAATACCAAG
AACTACCCGAAGGAGAGAAACTACTCTTCGACCCGCGAACTATTGAATCA
CTTTCAtcATCGCTAGAAGTATTAGATGTTAGTGGAAACAATTTGGATGA
ATTGAGTGATCTGAAGATCTTACGATTTCTTGACAATTTACGCATAAAAG
ATAATGATTTGGATAGCTGGCATGATCTCTCTGAATGTTTATTCGAATGG
AAAAGATTACGTAATCTTGATATGAATGGCAATCCGATTTGCTCACATAA
AAAATTCAGGGATAAACTGATCATCATTTCAAAATCGTTAGACATGATCA
ATGAGAAAGAAGTCAGCAATTCCACTCGACAATTCCTCGAAAATTGGTAC
GCCAATAAAGAAGCGAAAAAGCAAATACGAAAGCAATCAAAAGATCGTTC
AAATAGTATCGACGTCATGCATAACTCCGCACTTGATGCTAGGTACCCCT
ATTCTGCAGACTCCGTTTATGATGCAGGTAGCTTAGTAGCAGAGCAGCTC
CCAAACAGTAAACACTTGTTGAGGCATCATAAACAATTTGTTGAGGTGTT
AGCGAAAGCCAGACGGAAACCTTTACCGCCACTCGAACAGCGATCAATAC
CGAGATATTCATCACCTGCGTCAGCAAGTTTAGTTGAACGCACAATGCAT
GATGGGAAACAGTACAGAGAAAGTTCCGTCAGATAAATGGTGAAGATTAC
TCAAGATATGCTTGTCAAATATGCAAGTCATTCTAAAAAGAGGTCAAACG
AAAGTAACATCCAGTACTTGAAACGATTGACTCACATTTATTTCCAAGAA
AAGAATATTGACCAAATTGATGGTTTGAATGAATGCAAGAATCTTTCAGT
TCTTTACCTCTACGACAACAATATTGAAGTGATCAAAAATTTGAGCTTTG
CTGCAAACTTGACACATCTTTATCTACAAAAGAATTGTATTAATCGAATA
TCTGGATTGGAGCACCTTCCACAACTTAATAAATTaTATTTGGGACAAAA
TCAAATCACAGTTGTAGAAGGATTGGACAAGAACAAGAGCTTGACAGAGC
TTCATATAGAATACCAAGAACTACCCGAAGGAGAGAAACTACTCTTCGAC
CCGCGAACTATTGAATCACTTTCAtcATCGCTAGAAGTATTAGATGTTAG
TGGAAACAATTTGGATGAATTGAGTGATCTGAAGATCTTACGATTTCTTG
ACAATTTACGCATAAAAGATAATGATTTGGATAGCTGGCATGATCTCTCT
GAATGTTTATTCGAATGGAAAAGATTACGTAATCTTGATATGAATGGCAA
TCCGATTTGCTCACATAAAAAATTCAGGGATAAACTGATCATCATTTCAA
AATCGTTAGACATGATCAATGAGAAAGAAGTCAGCAATTCCACTCGACAA
TTCCTCGAAAATTGGTACGCCAATAAAGAAGCGAAAAAGCAAATACGAAA
GCAATCAAAAGATCGTTCAAATAGTATCGACGTCATGCATAACTCCGCAC
TTGATGCTAGGTACCCCTATTCTGCAGACTCCGTTTATGATGCAGGTAGC
TTAGTAGCAGAGCAGCTCCCAAACAGTAAACACTTGTTGAGGCATCATAA
ACAATTTGTTGAGGTGTTAGCGAAAGCCAGACGGAAACCTTTACCGCCAC
TCGAACAGCGATCAATACCGAGATATTCATCACCTGCGTCAGCAAGTTTA
GTTGAACGCACAATGCATGATGGGAAACAGTACAGAGAAAGTTCCGTCAG
ATAAATGGTGAAGATTACTCAAGATATGCTTGTCAAATATGCAAGTCATT
CTAAAAAGAGGTCAAACGAAAGTAACATCCAGTACTTGAAACGATTGACT
CACATTTATTTCCAAGAAAAGAATATTGACCAAATTGATGGTTTGAATGA
ATGCAAGAATCTTTCAGTTCTTTACCTCTACGACAACAATATTGAAGTGA
TCAAAAATTTGAGCTTTGCTGCAAACTTGACACATCTTTATCTACAAAAG
AATTGTATTAATCGAATATCTGGATTGGAGCACCTTCCACAACTTAATAA
ATTaTATTTGGGACAAAATCAAATCACAGTTGTAGAAGGATTGGACAAGA
ACAAGAGCTTGACAGAGCTTCATATAGAATACCAAGAACTACCCGAAGGA
GAGAAACTACTCTTCGACCCGCGAACTATTGAATCACTTTCAtcATCGCT
AGAAGTATTAGATGTTAGTGGAAACAATTTGGATGAATTGAGTGATCTGA
AGATCTTACGATTTCTTGACAATTTACGCATAAAAGATAATGATTTGGAT
AGCTGGCATGATCTCTCTGAATGTTTATTCGAATGGAAAAGATTACGTAA
TCTTGATATGAATGGCAATCCGATTTGCTCACATAAAAAATTCAGGGATA
AACTGATCATCATTTCAAAATCGTTAGACATGATCAATGAGAAAGAAGTC
AGCAATTCCACTCGACAATTCCTCGAAAATTGGTACGCCAATAAAGAAGC
GAAAAAGCAAATACGAAAGCAATCAAAAGATCGTTCAAATAGTATCGACG
TCATGCATAACTCCGCACTTGATGCTAGGTACCCCTATTCTGCAGACTCC
GTTTATGATGCAGGTAGCTTAGTAGCAGAGCAGCTCCCAAACAGTAAACA
CTTGTTGAGGCATCATAAACAATTTGTTGAGGTGTTAGCGAAAGCCAGAC
GGAAACCTTTACCGCCACTCGAACAGCGATCAATACCGAGATATTCATCA
CCTGCGTCAGCAAGTTTAGTTGAACGCACAATGCATGATGGGAAACAGTA
CAGAGAAAGTTCCGTCAGATAAATGGTGAAGATTACTCAAGATATGCTTG
TCAAATATGCAAGTCATTCTAAAAAGAGGTCAAACGAAAGTAACATCCAG
TACTTGAAACGATTGACTCACATTTATTTCCAAGAAAAGAATATTGACCA
AATTGATGGTTTGAATGAATGCAAGAATCTTTCAGTTCTTTACCTCTACG
ACAACAATATTGAAGTGATCAAAAATTTGAGCTTTGCTGCAAACTTGACA
CATCTTTATCTACAAAAGAATTGTATTAATCGAATATCTGGATTGGAGCA
CCTTCCACAACTTAATAAATTaTATTTGGGACAAAATCAAATCACAGTTG
TAGAAGGATTGGACAAGAACAAGAGCTTGACAGAGCTTCATATAGAATAC
CAAGAACTACCCGAAGGAGAGAAACTACTCTTCGACCCGCGAACTATTGA
ATCACTTTCAtcATCGCTAGAAGTATTAGATGTTAGTGGAAACAATTTGG
ATGAATTGAGTGATCTGAAGATCTTACGATTTCTTGACAATTTACGCATA
AAAGATAATGATTTGGATAGCTGGCATGATCTCTCTGAATGTTTATTCGA
ATGGAAAAGATTACGTAATCTTGATATGAATGGCAATCCGATTTGCTCAC
ATAAAAAATTCAGGGATAAACTGATCATCATTTCAAAATCGTTAGACATG
ATCAATGAGAAAGAAGTCAGCAATTCCACTCGACAATTCCTCGAAAATTG
GTACGCCAATAAAGAAGCGAAAAAGCAAATACGAAAGCAATCAAAAGATC
GTTCAAATAGTATCGACGTCATGCATAACTCCGCACTTGATGCTAGGTAC
CCCTATTCTGCAGACTCCGTTTATGATGCAGGTAGCTTAGTAGCAGAGCA
GCTCCCAAACAGTAAACACTTGTTGAGGCATCATAAACAATTTGTTGAGG
TGTTAGCGAAAGCCAGACGGAAACCTTTACCGCCACTCGAACAGCGATCA
ATACCGAGATATTCATCACCTGCGTCAGCAAGTTTAGTTGAACGCACAAT
GCATGATGGGAAACAGTACAGAGAAAGTTCCGTCAGATAAATGGTGAAGA
TTACTCAAGATATGCTTGTCAAATATGCAAGTCATTCTAAAAAGAGGTCA
AACGAAAGTAACATCCAGTACTTGAAACGATTGACTCACATTTATTTCCA
AGAAAAGAATATTGACCAAATTGATGGTTTGAATGAATGCAAGAATCTTT
CAGTTCTTTACCTCTACGACAACAATATTGAAGTGATCAAAAATTTGAGC
TTTGCTGCAAACTTGACACATCTTTATCTACAAAAGAATTGTATTAATCG
AATATCTGGATTGGAGCACCTTCCACAACTTAATAAATTaTATTTGGGAC
AAAATCAAATCACAGTTGTAGAAGGATTGGACAAGAACAAGAGCTTGACA
GAGCTTCATATAGAATACCAAGAACTACCCGAAGGAGAGAAACTACTCTT
CGACCCGCGAACTATTGAATCACTTTCAtcATCGCTAGAAGTATTAGATG
TTAGTGGAAACAATTTGGATGAATTGAGTGATCTGAAGATCTTACGATTT
CTTGACAATTTACGCATAAAAGATAATGATTTGGATAGCTGGCATGATCT
CTCTGAATGTTTATTCGAATGGAAAAGATTACGTAATCTTGATATGAATG
GCAATCCGATTTGCTCACATAAAAAATTCAGGGATAAACTGATCATCATT
TCAAAATCGTTAGACATGATCAATGAGAAAGAAGTCAGCAATTCCACTCG
ACAATTCCTCGAAAATTGGTACGCCAATAAAGAAGCGAAAAAGCAAATAC
GAAAGCAATCAAAAGATCGTTCAAATAGTATCGACGTCATGCATAACTCC
GCACTTGATGCTAGGTACCCCTATTCTGCAGACTCCGTTTATGATGCAGG
TAGCTTAGTAGCAGAGCAGCTCCCAAACAGTAAACACTTGTTGAGGCATC
ATAAACAATTTGTTGAGGTGTTAGCGAAAGCCAGACGGAAACCTTTACCG
CCACTCGAACAGCGATCAATACCGAGATATTCATCACCTGCGTCAGCAAG
TTTAGTTGAACGCACAATGCATGATGGGAAACAGTACAGAGAAAGTTCCG
TCAGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013831XLOC_013831Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024626-proteinTCONS_00024626-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024626-exon-sc0000506-1491911889:137642..137835TCONS_00024626-exon-sc0000506-1491911889:137642..137835Clytia hemisphaericaexon
TCONS_00024626-exon-sc0000506-1510915933:137642..137835TCONS_00024626-exon-sc0000506-1510915933:137642..137835Clytia hemisphaericaexon
TCONS_00024626-exon-sc0000506-1575043694:137642..137835TCONS_00024626-exon-sc0000506-1575043694:137642..137835Clytia hemisphaericaexon
TCONS_00024626-exon-sc0000506-1491911889:138186..138352TCONS_00024626-exon-sc0000506-1491911889:138186..138352Clytia hemisphaericaexon
TCONS_00024626-exon-sc0000506-1510915933:138186..138352TCONS_00024626-exon-sc0000506-1510915933:138186..138352Clytia hemisphaericaexon
TCONS_00024626-exon-sc0000506-1575043694:138186..138352TCONS_00024626-exon-sc0000506-1575043694:138186..138352Clytia hemisphaericaexon
TCONS_00024626-exon-sc0000506-1491911889:138520..138658TCONS_00024626-exon-sc0000506-1491911889:138520..138658Clytia hemisphaericaexon
TCONS_00024626-exon-sc0000506-1510915933:138520..138658TCONS_00024626-exon-sc0000506-1510915933:138520..138658Clytia hemisphaericaexon
TCONS_00024626-exon-sc0000506-1575043694:138520..138658TCONS_00024626-exon-sc0000506-1575043694:138520..138658Clytia hemisphaericaexon
TCONS_00024626-exon-sc0000506-1491911889:138817..139051TCONS_00024626-exon-sc0000506-1491911889:138817..139051Clytia hemisphaericaexon
TCONS_00024626-exon-sc0000506-1510915933:138817..139051TCONS_00024626-exon-sc0000506-1510915933:138817..139051Clytia hemisphaericaexon
TCONS_00024626-exon-sc0000506-1575043694:138817..139051TCONS_00024626-exon-sc0000506-1575043694:138817..139051Clytia hemisphaericaexon
TCONS_00024626-exon-sc0000506-1491911889:139535..139847TCONS_00024626-exon-sc0000506-1491911889:139535..139847Clytia hemisphaericaexon
TCONS_00024626-exon-sc0000506-1510915933:139535..139847TCONS_00024626-exon-sc0000506-1510915933:139535..139847Clytia hemisphaericaexon
TCONS_00024626-exon-sc0000506-1575043694:139535..139847TCONS_00024626-exon-sc0000506-1575043694:139535..139847Clytia hemisphaericaexon
TCONS_00024626-exon-sc0000506-1491911889:140299..140860TCONS_00024626-exon-sc0000506-1491911889:140299..140860Clytia hemisphaericaexon
TCONS_00024626-exon-sc0000506-1510915933:140299..140860TCONS_00024626-exon-sc0000506-1510915933:140299..140860Clytia hemisphaericaexon
TCONS_00024626-exon-sc0000506-1575043694:140299..140860TCONS_00024626-exon-sc0000506-1575043694:140299..140860Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000506supercontigsc0000506:137642..140860 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.7009	16.1005	4.47286	2.38436	28.5491	22.6948	21.7155	21.7013	14.0199	12.2645	11.4425	10.8611	3.67148	4.02275	5.52166	5.50894	8.13628	7.75488	4.0917	5.38025	5.82716	6.48471	21.3698	21.936	15.307	15.2869	6.25015	5.44744	13.4631	15.5782
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00024626 vs. Swiss-Prot (Human)
Match: PPR42 (Protein phosphatase 1 regulatory subunit 42 OS=Homo sapiens GN=PPP1R42 PE=2 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 7.344e-65
Identity = 135/267 (50.56%), Postives = 186/267 (69.66%), Query Frame = 3 
Query:   63 MVKITQDMLVKYASHSKKRSNESNIQYLKRLTHIYFQEKNIDQIDGLNECKNLSVLYLYDNNIEVIKNLSFAANLTHLYLQKNCINRISGLEHLPQLNKLYLGQNQITVVEGLDKNKSLTELHIEYQELPEGEKLLFDPRTIXXXXXXXXXXXXXGNNLDELSDLKILRFLDNLRIKDNDLDSWHDLSECLFEWKRLRNLDMNGNPICSHKKFRDKLIIISKSLDMINEKEVSNSTRQFLENWYANKEA---KKQIRKQSKDRSNSI 854
            MV++T D++ +  S+ K R  E+  Q LK++THI F +KNID I+ L+ CKNLSVLYLYDN I  I NL++A NLTHLYLQ NCI+ I  L  L +L KLYLG N I V+EGL+    L ELH+E Q LP GEKLLFDPRT+ SL+ SL +L++S NN+D+++DL++L  L+ L   DN L    DL   L +  +L  +D+NGNP+C   K+RD+LI++SKSL+ ++ KE+ N  RQFL NW A+K+A    K+   +++D SNS+
Sbjct:    1 MVRLTLDLIAR-NSNLKPRKEETISQCLKKITHINFSDKNIDAIEDLSLCKNLSVLYLYDNCISQITNLNYATNLTHLYLQNNCISCIENLRSLKKLEKLYLGGNYIAVIEGLEGLGELRELHVENQRLPLGEKLLFDPRTLHSLAKSLCILNISNNNIDDITDLELLENLNQLIAVDNQLLHVKDLEFLLNKLMKLWKIDLNGNPVCLKPKYRDRLILVSKSLEFLDGKEIKNIERQFLMNWKASKDAKKISKKRSSKNEDASNSL 266
The following BLAST results are available for this feature:
BLAST of TCONS_00024626 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PPR427.344e-6550.56Protein phosphatase 1 regulatory subunit 42 OS=Hom... [more]
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