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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024617 ID=TCONS_00024617|Name=TCONS_00024617|organism=Clytia hemisphaerica|type=transcript|length=5216bpRun BLAST on NCBI protein sequence of TCONS_00024617-protein >TCONS_00024617-protein ID=TCONS_00024617-protein|Name=TCONS_00024617-protein|organism=Clytia hemisphaerica|type=polypeptide|length=692bp MASNGHTENTASMKRNKSFTELLGDNLTFDVKAEVFLDGHVKSMDQYNQMRun BLAST on NCBI transcript from alignment at sc0000506:7059..26280+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024617 ID=TCONS_00024617|Name=TCONS_00024617|organism=Clytia hemisphaerica|type=transcript|length=19222bp|location=Sequence derived from alignment at sc0000506:7059..26280+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000506:7059..26280+ >TCONS_00024617 ID=TCONS_00024617|Name=TCONS_00024617|organism=Clytia hemisphaerica|type=CDS|length=31185bp|location=Sequence derived from alignment at sc0000506:7059..26280+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00024617 vs. Swiss-Prot (Human)
Match: ACSA (Acetyl-coenzyme A synthetase, cytoplasmic OS=Homo sapiens GN=ACSS2 PE=1 SV=1) HSP 1 Score: 904.049 bits (2335), Expect = 0.000e+0 Identity = 423/675 (62.67%), Postives = 526/675 (77.93%), Query Frame = 3
Query: 1812 GDNLTFDVKAEVFLDGHVKSMDQYNQMHKQSVEDPESFWTKIANQFYWKEKWSGKFMEYNFDVRKGDIFIKFMEGGKTNICYNVLDRVAQETP--DKIAFYWEGNDPANCKTYTYKQLLDEVCKFSNVLKSKGLKKGDRVALYMPMIIELVVAMLACARIGIIHSIVFAGFSADSLAERLKDGDCSLLITADYSVRGDKSIDLKTVADNALKECGEDGVDIKMCIVVKN-SSAE---GDGT-HSPKQKKA--KTSVSWNEDVDLWWHDLMTGASNDCQCEWMDAEDPLFILYTSGSTGKPKGVLHTTAGYMLYAATTFKYSFDYHEGEVYWCTADIGWITGHSYIVYGPMANAATSVMFEGTPLYPDAGRMWAVVEKYKVSKFYTAPTAIRMLMKFSDDFVKKYDRSSLKVLGTVGEPINPEAWLWYYKIVGEERCSIVDTFWQTETGGHVIGGMPGATMMKPGSASFPFFGAVPVIMDEDGKEKEGVEVDQGYLVFKQPWPGLMRTLYGNHSRYQAAYFERFPGYYCAGDGAYRDKDGYYWITGRIDDLMNVSGHLLSTAQVESAIVEHSSISEAAVVGYPHPVKGTGIYCFVTPKNGIRFCDALVSELKQKVRTRIGPIATPDVIHEAPGLPKTRSGKIMRRILRKIAAGQTDIGDTTTLADSTVVDKLFTNR 3809
G ++ EV HV S+ +Y ++H++SVE+P FW IA +FYWK G F+ YNFDV KG IFI++M+G TNICYNVLDR E DK+AFYWEGN+P TY QLL +VC+FSNVL+ +G++KGDRVA+YMPMI ELVVAMLACARIG +HSIVFAGFS++SL ER+ D CSLLIT D RG+K ++LK +AD AL++C E G ++ CIVVK+ AE GD T SP K++ +SWN+ +DLWWH+LM A ++C+ EW DAEDPLFILYTSGSTGKPKGV+HT GYMLY ATTFKY FD+H +V+WCTADIGWITGHSY+ YGP+AN ATSV+FEG P YPD R+W++V+KYKV+KFYTAPTAIR+LMKF D+ V K+ R+SL+VLGTVGEPINPEAWLWY+++VG +RC IVDTFWQTETGGH++ +PGAT MKPGSA+FPFFG P I++E +E +GYLVFKQPWPG+MRT+YGNH R++ YF++FPGYY GDG RD+DGYYWITGRIDD++NVSGHLLSTA+VESA+VEH +++EAAVVG+PHPVKG +YCFVT +G F L ELK+++R +IGPIATPD I APGLPKTRSGKIMRR+LRKIA D+GD +T+AD +V+ LF++R
Sbjct: 24 GRARSWSPPPEVSRSAHVPSLQRYRELHRRSVEEPREFWGDIAKEFYWKTPCPGPFLRYNFDVTKGKIFIEWMKGATTNICYNVLDRNVHEKKLGDKVAFYWEGNEPGETTQITYHQLLVQVCQFSNVLRKQGIQKGDRVAIYMPMIPELVVAMLACARIGALHSIVFAGFSSESLCERILDSSCSLLITTDAFYRGEKLVNLKELADEALQKCQEKGFPVRCCIVVKHLGRAELGMGDSTSQSPPIKRSCPDVQISWNQGIDLWWHELMQEAGDECEPEWCDAEDPLFILYTSGSTGKPKGVVHTVGGYMLYVATTFKYVFDFHAEDVFWCTADIGWITGHSYVTYGPLANGATSVLFEGIPTYPDVNRLWSIVDKYKVTKFYTAPTAIRLLMKFGDEPVTKHSRASLQVLGTVGEPINPEAWLWYHRVVGAQRCPIVDTFWQTETGGHMLTPLPGATPMKPGSATFPFFGVAPAILNE--SGEELEGEAEGYLVFKQPWPGIMRTVYGNHERFETTYFKKFPGYYVTGDGCQRDQDGYYWITGRIDDMLNVSGHLLSTAEVESALVEHEAVAEAAVVGHPHPVKGECLYCFVTLCDGHTFSPKLTEELKKQIREKIGPIATPDYIQNAPGLPKTRSGKIMRRVLRKIAQNDHDLGDMSTVADPSVISHLFSHR 696 The following BLAST results are available for this feature:
BLAST of TCONS_00024617 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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