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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024606 ID=TCONS_00024606|Name=TCONS_00024606|organism=Clytia hemisphaerica|type=transcript|length=1940bp
TGGACAagggaatgtttttttttaaattacatttTCACATCTTTTGTGAA
ATCTTTTCACATCTTTTGATGCAAGACCAGTAAACAGCttcatattcatg
atattcgtgacgtaatattttctacggaaataccccggttttagccagta
gtggcaaatttaaactagataaaagttgtataaaatttgccactactggc
aaaaaccggggtctttccgtagaaaacattacgtcatgaatatgtATAAA
TCGGCTTTTGATTACGTAATGATGTAATACCAAAATACTGAACGGTGCAG
TTTAAATATATGTCTTTATGTAAGGCAATCCATGTGTAGTGTGTGCAGCG
AGCTTTAAAATAAGGAAGGTATACCCAAAAACTGGTCTCTTACAATCTAT
GTTTCAATTCTAGCCATAATTCCTACAATTATTTGAATTCATTGTTTTAT
GTTTGTAATGCAGTTAGCAGTTACCCTGATGGTACTGAATGCTCTATATC
CCAAAAAATTCAATCTAACGGTCCATCTTTCGAGGAAACAACAAAAGTCA
GAATATCCAAGGTTAGaaattcaatcataaaatttcAACGTTTTCAATTC
TCTCTTATAAGAAGAAGTGTTTTCTTTAGCGATCTGTAATCTTGACTATC
TTGAAACTTGTACCAATGTAGTCCATTGCCGTAACCACTAACTCCAGTCG
GAAAATATTGCCCATTCATAAAGTCGTGGTGACAATTTTTGAACCACCAT
CCACCAGGATATTGGTTGGCGCATTCTCCACTACTCGCGTCATTATCTTG
ATCAATGGAGCTGAACTTCTGTCCTTTCACACGTTTAAACAAATCGAATT
CACTGTATCGTGGTAATACTTTCTCATAGTTGAATACGTATTTTGAAGCA
GTTGTACCGATGGTGAAACTAGCGAATCGTTTGACTTGAGTTTTGCCGGA
GAAGGCTTCGACGATGACAAAAAGATCATGAGATTTTGATGTGGTCAAAA
GGTGCATATTTTCAAGGCCTAACCAATATTCTCCACCGTTAGATACTCCA
AAACCAGTCTCATACTGGCTGAAAATCTTATCGTGAAATGAAACGGATCC
ATTGAAACGCCTTTGAAACGCCATCCACCCTCCGCCCTCAGCCTCCATGA
AGCAATACACGTTTTGCTTTCCGTTAGGCAACTTAACTTCATACACGCCA
TTCTTTTTGTACCCATATCGATACCAATCTTTACACGTTTTCGCTTCAAT
GACGGTCGAATACAATCGAGCACCAATTTTCTCGACCAATGAAAATGCAG
CAATTTGGCGGTAATAATGATATGTGAAGTCAAAGAATCGACATTCGAAT
CCCTGTGTTGCAACTGTTGTTGATGTGGTTGATGTCACTTCATAAGCGAC
GCATAATCGGTTATATTTACACAAGCCAAGACACTGTTGATCGCTTTTTA
ACGTCACCTCATAATAAGATTCATTTGAAAAGGTGTTCCCAGTTTCAACC
AAATTGAAGATTTGACCTAAACATCTGACTGGATGGCGACTAATATAAGT
CAATACAATCACGATTAGATAATGAAACATTTTGGAGAGGTTTCTCACTT
CAAATGGATTTCTTGTACTGAAATTATGGAGAATGTCAACTAAATTTTAT
AATGGCAATGATGATAcagtagacgatgctatcgtccgtataatatatta
ttatgatataacatagtttgtatattataaaacgtaatatgtttcgcggc
ggatagagtctgtgtttacgacaacagctactcccgtaaaaaatttccgt
cttcacgtttgttccttttagatgaaactcgtcttagtcTAATGCTACAG
TAGAGTCTCCTTGAtttgaaacatatttttcttttctgaaaatGTTTGCC
ATCCCCCGACAAGCTTTCTTTTGAACTGGCAGAGAAAAAT Run BLAST on NCBI transcript from alignment at sc0000504:80710..82649- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024606 ID=TCONS_00024606|Name=TCONS_00024606|organism=Clytia hemisphaerica|type=transcript|length=1940bp|location=Sequence derived from alignment at sc0000504:80710..82649- (Clytia hemisphaerica)
TGGACAAGGGAATGTTTTTTTTTAAATTACATTTTCACATCTTTTGTGAA
ATCTTTTCACATCTTTTGATGCAAGACCAGTAAACAGCTTCATATTCATG
ATATTCGTGACGTAATATTTTCTACGGAAATACCCCGGTTTTAGCCAGTA
GTGGCAAATTTAAACTAGATAAAAGTTGTATAAAATTTGCCACTACTGGC
AAAAACCGGGGTCTTTCCGTAGAAAACATTACGTCATGAATATGTATAAA
TCGGCTTTTGATTACGTAATGATGTAATACCAAAATACTGAACGGTGCAG
TTTAAATATATGTCTTTATGTAAGGCAATCCATGTGTAGTGTGTGCAGCG
AGCTTTAAAATAAGGAAGGTATACCCAAAAACTGGTCTCTTACAATCTAT
GTTTCAATTCTAGCCATAATTCCTACAATTATTTGAATTCATTGTTTTAT
GTTTGTAATGCAGTTAGCAGTTACCCTGATGGTACTGAATGCTCTATATC
CCAAAAAATTCAATCTAACGGTCCATCTTTCGAGGAAACAACAAAAGTCA
GAATATCCAAGGTTAGAAATTCAATCATAAAATTTCAACGTTTTCAATTC
TCTCTTATAAGAAGAAGTGTTTTCTTTAGCGATCTGTAATCTTGACTATC
TTGAAACTTGTACCAATGTAGTCCATTGCCGTAACCACTAACTCCAGTCG
GAAAATATTGCCCATTCATAAAGTCGTGGTGACAATTTTTGAACCACCAT
CCACCAGGATATTGGTTGGCGCATTCTCCACTACTCGCGTCATTATCTTG
ATCAATGGAGCTGAACTTCTGTCCTTTCACACGTTTAAACAAATCGAATT
CACTGTATCGTGGTAATACTTTCTCATAGTTGAATACGTATTTTGAAGCA
GTTGTACCGATGGTGAAACTAGCGAATCGTTTGACTTGAGTTTTGCCGGA
GAAGGCTTCGACGATGACAAAAAGATCATGAGATTTTGATGTGGTCAAAA
GGTGCATATTTTCAAGGCCTAACCAATATTCTCCACCGTTAGATACTCCA
AAACCAGTCTCATACTGGCTGAAAATCTTATCGTGAAATGAAACGGATCC
ATTGAAACGCCTTTGAAACGCCATCCACCCTCCGCCCTCAGCCTCCATGA
AGCAATACACGTTTTGCTTTCCGTTAGGCAACTTAACTTCATACACGCCA
TTCTTTTTGTACCCATATCGATACCAATCTTTACACGTTTTCGCTTCAAT
GACGGTCGAATACAATCGAGCACCAATTTTCTCGACCAATGAAAATGCAG
CAATTTGGCGGTAATAATGATATGTGAAGTCAAAGAATCGACATTCGAAT
CCCTGTGTTGCAACTGTTGTTGATGTGGTTGATGTCACTTCATAAGCGAC
GCATAATCGGTTATATTTACACAAGCCAAGACACTGTTGATCGCTTTTTA
ACGTCACCTCATAATAAGATTCATTTGAAAAGGTGTTCCCAGTTTCAACC
AAATTGAAGATTTGACCTAAACATCTGACTGGATGGCGACTAATATAAGT
CAATACAATCACGATTAGATAATGAAACATTTTGGAGAGGTTTCTCACTT
CAAATGGATTTCTTGTACTGAAATTATGGAGAATGTCAACTAAATTTTAT
AATGGCAATGATGATACAGTAGACGATGCTATCGTCCGTATAATATATTA
TTATGATATAACATAGTTTGTATATTATAAAACGTAATATGTTTCGCGGC
GGATAGAGTCTGTGTTTACGACAACAGCTACTCCCGTAAAAAATTTCCGT
CTTCACGTTTGTTCCTTTTAGATGAAACTCGTCTTAGTCTAATGCTACAG
TAGAGTCTCCTTGATTTGAAACATATTTTTCTTTTCTGAAAATGTTTGCC
ATCCCCCGACAAGCTTTCTTTTGAACTGGCAGAGAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024606-exon-sc0000504-1575043694:80710..82649 | TCONS_00024606-exon-sc0000504-1575043694:80710..82649 | Clytia hemisphaerica | exon |
| TCONS_00024606-exon-sc0000504-1510915933:80710..82649 | TCONS_00024606-exon-sc0000504-1510915933:80710..82649 | Clytia hemisphaerica | exon |
| TCONS_00024606-exon-sc0000504-1491911889:80710..82649 | TCONS_00024606-exon-sc0000504-1491911889:80710..82649 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000504 | supercontig | sc0000504:80710..82649 - |
Blast
BLAST of TCONS_00024606 vs. Swiss-Prot (Human)
Match: MFAP4 (Microfibril-associated glycoprotein 4 OS=Homo sapiens GN=MFAP4 PE=1 SV=2) HSP 1 Score: 133.265 bits (334), Expect = 1.121e-34 Identity = 84/217 (38.71%), Postives = 120/217 (55.30%), Query Frame = -1
Query: 603 CKDWYRYGYKKNGVYEV--KLPNGKQNVYCFMEAEGGGWMAFQRRFNGSVSFHDKIFSQYETGFGVSNGGEYWLGLENMHLLTTSKSHDLFVIVEAFSGKTQVKRFASFTIGTTA-SKYVFNYEKVLPRYSEF---DLFKRVKGQKFSSIDQDNDASSGECANQYPGGWWFKNCHHDFMNGQYFPTGVSGYGNGLHWYKFQDSQDYRSLKKTLLLIR 1235
C D Y GY+ +GVY + P+ V+C M EGG W FQ+RFNGSVSF + ++ Y+ GFG ++G EYWLGL+NMHLLT + ++L V +E F T ++A F+I A S Y + + + D GQKFS+ D+D D CA G +WF++CH +NG Y Y NG++W +++ Y SLK+T + IR
Sbjct: 41 CDDIYAQGYQSDGVYLIYPSGPSVPVPVFCDMTTEGGKWTVFQKRFNGSVSFF-RGWNDYKLGFGRADG-EYWLGLQNMHLLTLKQKYELRVDLEDFENNTAYAKYADFSISPNAVSAEEDGYTLFVAGFEDGGAGDSLSYHSGQKFSTFDRDQDLFVQNCAALSSGAFWFRSCHFANLNGFYLGGSHLSYANGINWAQWKGF--YYSLKRTEMKIR 253
The following BLAST results are available for this feature:
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