TCONS_00024598 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024598
Unique NameTCONS_00024598
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1447

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024598 ID=TCONS_00024598|Name=TCONS_00024598|organism=Clytia hemisphaerica|type=transcript|length=1447bp
GGAAAATTtgcaagaaaaaataaaatcattaacAAAAGATTTTGAACAAT
TACAAAAAGAAGTTTCTGTTGCCAAAGATTACCAATCTTCATGGCATTCT
TGCTCTCAAACTTCCACTACTGATGTTGATGTAACTAAAAATACCAAGAA
AGCTCCAGTTAATATCCCATTGAGAATAGAGACAGAACATTCAGATGATT
GGCATGCTATTGAGATCAAGAATCTAGAAGACTTATTGCTCAATAAATCG
CCAAAGAAATTCTTCCGACAACAAGTCAATTTACATGATATCGCAACTTC
ACTGAGAAATAAAGGGATACTTCGCATACAAAATGCGTTGTATAGATCCA
TATTTTCATATTCGAATGATATTGAAAGACTGATTCTACTACAAGAGACA
TCTGCAGATCCTGAAGCATATGCTGGTACCTTGATAGGTGTTGGCAAGAT
TTTAAATCAACATGAAACAATAAGCTCCCTGGAAACACATCAAGACGTTA
GAGTGATCTATTTGAGTTTGTCCAGAACGAATTTCGATTTGTCCAAAGTG
GCGATGAACGAAGTTGACAAGATTAAAGATATTCTTTCGACACATATATG
CAATCTGAGGAAGAAAGCAGTGCTGCCCTTTGTTGCTGAATTCTATcctT
GGTGTAAGAATTTCTCGTTACCCAAAGTAACTAGCGAGGAACAGGACAGG
ACATCTTGCATTTCACCACCAGTGCCGTGGTGCGATATGGCTGAAGAAGA
ATCCATGCTCCCTCTCAACCCCTCGCATCTCAAGAACGGCTCATCAAGTG
AACCGTGGCATAAGACGGAATACAAAAACCTGGATGAGATTACTGATTGG
GTGGATTCAGAATATTATTTCGCTGATGTTAATATTGGTGTCTTGTACGA
GTCCCTTATaagAGACGAGCCGATTGAGATCGACATTGATTTATTCGAGG
ATATCGATCCATCAGTAAAGAACACCTTCCTTATCATCCGAAAACTCTGC
TCCGGTAATTCCGACAGCCCCAAGAAATCGGTCATCGGAATGGCTGAGGT
GCTAGAAAAAGTTGAAGACGGCCATCGAATCAAGTGCTCGTTCCTGTGTT
TATCCACGCCCCAATACGTGGACACGCCCTGGTGTGATAACGAAATGTTT
GTCAACGGACAACAAATTGTTCATAAAGAAGACTTGAGGATCATATTGGA
TGAGTATAAGCTCTCGTTACGTCACCACAAAGCTCAACCCCTGTTTGATG
ATCTTTTTCCCTGGGATCCTGACGCACCTAGACGTAAATGCACGACAAGA
AGTCCTGTAAGGCCACCGTCAAAATCTTTCAcccaaaaaaccataacatt
cgATAAAACAACCCATGATGACAGGTCAGCTTCAAATAAAGTTAAAGAAA
TCCCACCCAGACTAAATCTTCAAAACCAGCCGCGAACAAAATTAAAG
Run BLAST on NCBI

transcript from alignment at sc0000504:163381..167491+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024598 ID=TCONS_00024598|Name=TCONS_00024598|organism=Clytia hemisphaerica|type=transcript|length=4111bp|location=Sequence derived from alignment at sc0000504:163381..167491+ (Clytia hemisphaerica)
GGAAAATTtgcaagaaaaaataaaatcattaacAAAAGATTTTGAACAAT
TACAAAAAGAAGTTTCTGTTGCCAAAGATTACCAATCTTCATGGCATTCT
TGCTCTCAAACTTCCACTACTGATGTTGATGTAACTAAAAATACCAAGAA
AGCTCCAGTTAATATCCCATTGAGAATAGAGACAGAACATTCAGATGATT
GGCATGCTATTGAGATCAAGAATCTAGAAGACTTATTGCTCAATAAATCG
CCAAAGAAATTCTTCCGACAACAAGTCAATTTACATGATATCGCAACTTC
ACTGAGAAATAAAGGGATACTTCGCATACAAAATGCGTTGTATAGATCCA
TATTTTCATATTCGAATGATATTGAAAGACTGATTCTACTACAAGAGACA
TCTGCAGATCCTGAAGCATATGCTGGTACCTTGATAGGTGTTGGCAAGAT
TTTAAATCAACATGAAACAATAAGCTCCCTGGAAACACATCAAGACGTTA
GAGTGATCTATTTGAGTTTGTCCAGAACGAATTTCGATTTGTCCAAAGTG
GCGATGAACGAAGTTGACAAGATTAAAGATATTCTTTCGACACATATATG
CAATCTGAGGAAGAAAGCAGTGCTGCCCTTTGTTGCTGAATTCTATGTAA
GAATCTCTTTCGTTAAATTTGTGATCGCAGGTTCCCCATAGTTCTCAAGT
CATCGTGTTGTCTCTAGCGTCATAGCAACTGGAAGGTGATCTTAAAACAC
CTAAATATTTCTTCTACATGGAATTATTGCTAAgttcatttttttatatt
tcattggTTAGGCATTAACCACTACACTCTTGGTCTACAACATAGTTTTG
ATCAAGTTTATATTACCAAAATGGCCAACCCTATCAATCATTCCTTtatt
ttcgttttcagcctTGGTGTAAGAATTTCTCGTTACCCAAAGTAACTAGC
GAGGAACAGGTAATATCACACATCTTATATTTAATTTGAATTACCTTAGT
CAGAGCTCTGTCTTTCAATTCTTTCTGAAGTTTGGGAAAGGCACCTTTCA
CCATAATCTTGATTACTCTGACATAACTTAGCGTGCTTATTTTTACACTT
ACCTTTTGGTGTTgatccgatttggctgaaattttgcacactttatCCTT
GGATGAACTTTGGGGGacgtattttcattttttcaaaattttgactttta
aagACGTGGTTACAAGTTTTAGCCCAAAAACAAGGCTAAAAACTTTAGGG
TAGGCTGTAGGTTTTAAGGGATTTCAAAGTTTCCACTCTTGttgtttttc
atcatttttacaATTTGGCTTACAAGTGAATTTTAAAATACTAAAATTGA
GCCACTATGGTTAGCACGCTCGACAGTGGACCAATAAATGAGAGAAAGAA
TGGTGTCCTTTAAGTAATTGAATATCTGGACTTTGGACAATATCCAGTCA
AAAATTCAGGGTAGTTTGGTCCAGGAGCCATATAAAAAGTTTACAGACCC
AAGATCTCGACCATGTTCTGATTATACATTTTAACCTCGTCAGGACAGGA
CATCTTGCATTTCACCACCAGTGCCGTGGTGCGATATGGCTGAAGAAGAA
TCCATGCTCCCTCTCAACCCCTCGCATCTCAAGAACGGCTCATCAAGTGA
ACCGTGGCATAAGACGGAATACAAAAACCTGGATGAGATTACTGATTGGG
TGGATTCAGAATATTATTTCGCTGATGTTAATATTGGTGTCTTGTACGAG
TCCCTTATaaggtttgttttgttttattgcGGTAATAAACACTTTCCTTA
AGTACGGGTCAGTTAAACTAGCTTGAACCATTCGGCAAAGCATCAGTTGC
GATGGTCCAGTGGTTAGTGCAGTGGTATCGAAGACGAAAGATGGGTAGTT
CGAGACGAGTTATTGGcattaattttcattctttttagtttaaaatcttt
taacctAATTTGTTTTCGATACTTTTTCCTATTGAAACATCATATAGTCT
TGATTagatttataaaaaagatttctaacaaatttccacaattcattttc
tataggtcttcggccgttaaaaAAAGTTATCTGACCGCTGCATCAAGTCT
TCGGtttttaattcaggtcttcggccgctaaaTCATGTCTGCGACCGCTA
ATTGTAATTCAGGTCTGTGtccgctgacggaaaaaaaatctgcgGGTGTG
CTCTTGAACTGATGATCAAGATCCTTATGGTATGTATTATATTTTAGAGA
CGAGCCGATTGAGATCGACATTGATTTATTCGAGGATATCGATCCATCAG
TAAAGAACACCTTCCTTATCATCCGAAAACTCTGCTCCGGTAATTCCGAC
AGCCCCAAGAAATCGGTCATCGGAATGGCTGAGGTGCTAGAAAAAGTTGA
AGACGGCCATCGAATCAAGTGCTCGTTCCTGTGTTTATCCACGCCCCAAT
ACGTGGACACGCCCTGGTGTGATAACGAAATGTTTGTCAACGGACAACAA
ATTGTTCATAAAGAAGACTTGAGGATCATATTGGATGAGTATAAGCTCTC
GTTACGTCACCACAAAGCTCAACCCCTGTTTGATGATCTTTTTGTAAGTG
AAAAGTCATATTTTACTCTCTGCTATACCATTTTACTGTGTGGTTATGTT
CTGGTCACTGTTGTGTACAGAAGCTTCAGAAAATGTCATTCCaacaaaat
ttgacttttttttcttttgaaaaacactttttaCAATACACCTGTACAGT
AGCGTGTTGGATCGACCGAAGTTCAAGCAAGCTGGGGAGGCAATACTTAA
AAGTTGGGATTTTGACGCCCCCTTTTAATGAAgaaatatctttgttaaaa
gcgaagtgaaagtttttttgttgcgGTTTTCTAGCTGTTTCACACAATGG
TGGTTTTCCAAATAGGAgagcattttatggtcgtctCATAGAGCGTGTGT
TAATTATTTTCAGACGAGGCTCTTCCCTCGTGGAATTGACATTGCATTTT
GTTAAAATTCCACTAATCTCATATTCTGACTCTAAAGCATGTTATAGCAT
TCTCGTGATATCTTGTCCCATGTCGTTTTAAACCAATCCATCAAACAATC
ACAAACTATCAATCATTGTGTCATCATGTGTCAATCCGTCTGGAACATCC
AATTTCAAAAGGTTGACCCTCTCCTTTCACGCAAAAACACAAGAATATTG
CATGCATTCACTCCCCTTTAAAGgctagacttgactttttttataaatat
ggGCTGTcttaaagttatttttctttaagGTTATGCTAAGCTTACTTTAA
CGGTCTTAAGGCGTGGACTTTAGTTGTCTTGTTTTTCTCTCAGATAAAAT
CCTCATACTGTTTTGAAAGGAGCATTTACTTTTTAGTTAACGTCATCTTT
CAAAGGAAACCCCTGCAGAGGAACCTTGTGTTACTTGCATGCACAAGACG
CTAACTCCTCAATTCAAAACTTGTTTTTCGAACCCTTAATTTTGTAGCTA
ATTATGCTAATCGGGTAGTTTAAcatttcaaactttgaatttcCGTTGTT
AAAGTTCTCAGGTAATCCGCACCAATCTTTAGCAAAAATCTCCCtagaaa
aaaacaataacatGATGCAGTTTCTGTCCAATGTATCATAAAGTCATACA
GAGTCATATTAAAATCTGCAGTGTTTGTGCATGCTTTGATGTATCGACAC
AAACTATATTTACTTTTAAGTAATGAACTTAGAAACGCATGTTTTCTTCT
CAGTATAATGCATTCTCgttaaaaaagaagagaatcAATTGTGACCCAGA
ACACACGTTGACATCTTTCAAGGCCAATCATGGTAAAATAAGCATACAGT
TCACGAAAGTTTTTATTAAGAAAGATTCGCGCATAAAAATTACAATCTTT
TCTAAACCGCTTTCTTTTTAAGCCCTGGGATCCTGACGCACCTAGACGTA
AATGCACGACAAGAAGTCCTGTAAGGCCACCGTCAAAATCTTTCAcccaa
aaaaccataacattcgATAAAACAACCCATGATGACAGGTCAGCTTCAAA
TAAAGTTAAAGAAATCCCACCCAGACTAAATCTTCAAAACCAGCCGCGAA
CAAAATTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013813XLOC_013813Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024598-exon-sc0000504-1491911889:163381..164026TCONS_00024598-exon-sc0000504-1491911889:163381..164026Clytia hemisphaericaexon
TCONS_00024598-exon-sc0000504-1510915933:163381..164026TCONS_00024598-exon-sc0000504-1510915933:163381..164026Clytia hemisphaericaexon
TCONS_00024598-exon-sc0000504-1575043694:163381..164026TCONS_00024598-exon-sc0000504-1575043694:163381..164026Clytia hemisphaericaexon
TCONS_00024598-exon-sc0000504-1491911889:164292..164339TCONS_00024598-exon-sc0000504-1491911889:164292..164339Clytia hemisphaericaexon
TCONS_00024598-exon-sc0000504-1510915933:164292..164339TCONS_00024598-exon-sc0000504-1510915933:164292..164339Clytia hemisphaericaexon
TCONS_00024598-exon-sc0000504-1575043694:164292..164339TCONS_00024598-exon-sc0000504-1575043694:164292..164339Clytia hemisphaericaexon
TCONS_00024598-exon-sc0000504-1491911889:164924..165141TCONS_00024598-exon-sc0000504-1491911889:164924..165141Clytia hemisphaericaexon
TCONS_00024598-exon-sc0000504-1510915933:164924..165141TCONS_00024598-exon-sc0000504-1510915933:164924..165141Clytia hemisphaericaexon
TCONS_00024598-exon-sc0000504-1575043694:164924..165141TCONS_00024598-exon-sc0000504-1575043694:164924..165141Clytia hemisphaericaexon
TCONS_00024598-exon-sc0000504-1491911889:165628..165973TCONS_00024598-exon-sc0000504-1491911889:165628..165973Clytia hemisphaericaexon
TCONS_00024598-exon-sc0000504-1510915933:165628..165973TCONS_00024598-exon-sc0000504-1510915933:165628..165973Clytia hemisphaericaexon
TCONS_00024598-exon-sc0000504-1575043694:165628..165973TCONS_00024598-exon-sc0000504-1575043694:165628..165973Clytia hemisphaericaexon
TCONS_00024598-exon-sc0000504-1491911889:167303..167491TCONS_00024598-exon-sc0000504-1491911889:167303..167491Clytia hemisphaericaexon
TCONS_00024598-exon-sc0000504-1510915933:167303..167491TCONS_00024598-exon-sc0000504-1510915933:167303..167491Clytia hemisphaericaexon
TCONS_00024598-exon-sc0000504-1575043694:167303..167491TCONS_00024598-exon-sc0000504-1575043694:167303..167491Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000504supercontigsc0000504:163381..167491 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.836779	0.728881	0.253902	0.378582	0.183914	0.50397	0.512325	0.779376	0.148362	0.183666	0.212811	0.118513	0.296304	0.320418	0.270755	0.814196	0.766535	0.584902	0	0	0.265287	0.278093	0.796666	0.288145	1.28135	2.41887	0.112933	0	0.445886	0.468905
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024598 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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