TCONS_00024588 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024588
Unique NameTCONS_00024588
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2048

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024588 ID=TCONS_00024588|Name=TCONS_00024588|organism=Clytia hemisphaerica|type=transcript|length=2048bp
CGATCAGAGGCAGTTTGAAAGACCCCGTTCGTTTGTCTGTTTTCGTATTT
CGTTTGAAAATGCACAATATGTGCATAGTGGCTTTCCACAGTTCATCACG
TGACAACACCTCCGCCAACGGGAAGTTTGGTCCCCAAACTTTCAAAAGTA
CTTTCATTATGGTCGGTCACACTTTTGTTCTGCGGCTATTTCCGTCGTGG
GCACAAGTCGAACACTCCCAACGAATGCTTCAGAGACAGATTGGATGGGA
GCTCGCGACATTGCATCTACATCACTGTTCTTCGCTCCTCTCTTGTAGCG
GATCTCGAAAGAATACTTCTGAAGCAGAACAGCCCATCTGGACAAGCGTC
CACTCGAATCGCGGAATCGCAACGCATGAATCAGGGGTTGATGATCCGTA
GATATTGTGAAGAAACGTCCTTCGAGATATTGACTGTATCTCTGAGATCG
TGTATGGGATCTCTGCGTTTCTCAGAACCCTACCTCCGTATCTGATTAGA
TGTGGCTTATCATCACCCGAAGTCTGTGACAGCACATACCCAAAAGCCAA
CCCAGAAGCGTCTGTGTTGAGGATGAACTCTTTGTTGAAATCCGGGGACT
CGAACAAGGGCGGGTTTGTCAACCTTTCAATTAGGGTTTGCCAGGCTTTG
TCTTGCTCTCCTCCCCACTGAAACTTTGGGATGCACTTGTAAAGAGGTCT
GGCGATCTCCGAGTACCCAGGAACAACGCGACGATAATAGTCCGTCAGCC
CTAGGAATGACTGGACTTCTTTGGTCGTTTTTGGCTTCTTGGCGTCCAAA
AGCTTCCTGACGTTATCGACCTTTGGCTTGATCCCTTCCGCTGACACTTC
ATGACCCAAGAAGTTGAGGACTGGAACACAAAAGTGACACTTCTTTCGCT
TCGTTTTCAATCCGGCGTCCCGCAATCGTTTGAATATGGTCTGGATATGC
TCTAGGTGCTTCTCGAAGGTGTCACTGTAAATGATAATATCATCAGTGAA
GATCGAAACAAAATTCCAAAGTTCATTTCTGAACACGTCTTCCAATGCTG
GTGTAATCTTCGTCGAAGGAATACATCATGTTTCTCAGCCCCTACAAGGT
TAAATGGGTAAACTCCTTCTTAAAAGAAGTAACCCCAAGTCCGTAGGTAA
TCAACAGAACGCTAGGTAAGTACTTGGAACAAGTACAAGTTAGCTAAACG
TTGACAGCTGAGTGTAAACTTGTTAGAGGACTTGTTTTTTGTACTCCCTC
AGCTCCAATGATGTAGATATTCCTTGAATTTCACCAACGAGATCTTTCTG
CTTCTTCTCCAGGTACCTCAGCCTTCGAATTTTCCTTTCCGTCGTTCGAA
GTTCTCTTTCTTGCCTTGTGATTTCCCTGGCTAGCTTCGTCTTCTTTTTC
CCTTTGGGCAATTCTTCCCTTAGGTTATGCTCCAACAGCTCCTTCAAGGT
TATCTTATCagccgaaaaaaaatctcataaacTGTTTGATGATTTCAAAA
CCATTATCAAAACTCCTGAGCAAGAGAAAAGCTTGATGGGATCATAATGG
TTGTTCGATCAACCAAGACAAACATCAATCAACTACATTCAACAATGTTT
GATCaaccatttttcttgaaatgtttcaaaatgttTGTTCAACCGTGCAA
ACATTATATAGGTTTTACAGCTACTTGCAAGCCATTCAAGTGATCAAACA
AACAGTTCGGTCTTAAACAATTCAACCAAAACTTCGTTCCTCTCCTTCAG
CATGAATTTCTGTACGTCTTTTGAATGTATTTCTAAAGTTTGCTAAAATT
GACACCACTTTAATCAACATTCATATGAAATGTCAATAATAACCACATCC
ACTTTTAAATACACAATTTCATTCATAATAATTCAACGTCAAATGTCAGT
AATAACCACATCCATTTCAAATGCACAATTCCATACGTAATAATCAATGT
CAATAATGTTCAAGTTCAATTTCAATACGGTAAAACTCAATGGTAATGCA
AATCAAACCAATGTCACTATTCGATGCTTTCCTGAACAATCCCGGTTG
Run BLAST on NCBI

protein sequence of TCONS_00024588-protein

>TCONS_00024588-protein ID=TCONS_00024588-protein|Name=TCONS_00024588-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
IRGSLKDPVRLSVFVFRLKMHNMCIVAFHSSSRDNTSANGKFGPQTFKST
FIMVGHTFVLRLFPSWAQVEHSQRMLQRQIGWELATLHLHHCSSLLSCSG
SRKNTSEAEQPIWTSVHSNRGIATHESGVDDP
Run BLAST on NCBI

transcript from alignment at sc0000504:103415..105571+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024588 ID=TCONS_00024588|Name=TCONS_00024588|organism=Clytia hemisphaerica|type=transcript|length=2157bp|location=Sequence derived from alignment at sc0000504:103415..105571+ (Clytia hemisphaerica)
CGATCAGAGGCAGTTTGAAAGACCCCGTTCGTTTGTCTGTTTTCGTATTT
CGTTTGAAAATGCACAATATGTGCATAGTGGCTTTCCACAGTTCATCACG
TGACAACACCTCCGCCAACGGGAAGTTTGGTCCCCAAACTTTCAAAAGTA
CTTTCATTATGGTCGGTCACACTTTTGTTCTGCGGCTATTTCCGTCGTGG
GCACAAGTCGAACACTCCCAACGAATGCTTCAGAGACAGATTGGATGGGA
GCTCGCGACATTGCATCTACATCACTGTTCTTCGCTCCTCTCTTGTAGCG
GATCTCGAAAGAATACTTCTGAAGCAGAACAGCCCATCTGGACAAGCGTC
CACTCGAATCGCGGAATCGCAACGCATGAATCAGGGGTTGATGATCCGTA
GATATTGTGAAGAAACGTCCTTCGAGATATTGACTGTATCTCTGAGATCG
TGTATGGGATCTCTGCGTTTCTCAGAACCCTACCTCCGTATCTGATTAGA
TGTGGCTTATCATCACCCGAAGTCTGTGACAGCACATACCCAAAAGCCAA
CCCAGAAGCGTCTGTGTTGAGGATGAACTCTTTGTTGAAATCCGGGGACT
CGAACAAGGGCGGGTTTGTCAACCTTTCAATTAGGGTTTGCCAGGCTTTG
TCTTGCTCTCCTCCCCACTGAAACTTTGGGATGCACTTGTAAAGAGGTCT
GGCGATCTCCGAGTACCCAGGAACAACGCGACGATAATAGTCCGTCAGCC
CTAGGAATGACTGGACTTCTTTGGTCGTTTTTGGCTTCTTGGCGTCCAAA
AGCTTCCTGACGTTATCGACCTTTGGCTTGATCCCTTCCGCTGACACTTC
ATGACCCAAGAAGTTGAGGACTGGAACACAAAAGTGACACTTCTTTCGCT
TCGTTTTCAATCCGGCGTCCCGCAATCGTTTGAATATGGTCTGGATATGC
TCTAGGTGCTTCTCGAAGGTGTCGCTGTAAATGAANACAAAAGTGACACT
TCTTTCGCTTCGTTTTCAATCCGGCGTCCCGCAAACGTTTGAATACGGTC
TGGATATGCTCTAGGTGCTCCTCGAAGGTGTCACTGTAAATGATAATATC
ATCAGTGAAGATCGAAACAAAATTCCAAAGTTCATTTCTGAACACGTCTT
CCAATGCTGGTGTAATCTTCGTCGAAGGAATACATCATGTTTCTCAGCCC
CTACAAGGTTAAATGGGTAAACTCCTTCTTAAAAGAAGTAACCCCAAGTC
CGTAGGTAATCAACAGAACGCTAGGTAAGTACTTGGAACAAGTACAAGTT
AGCTAAACGTTGACAGCTGAGTGTAAACTTGTTAGAGGACTTGTTTTTTG
TACTCCCTCAGCTCCAATGATGTAGATATTCCTTGAATTTCACCAACGAG
ATCTTTCTGCTTCTTCTCCAGGTACCTCAGCCTTCGAATTTTCCTTTCCG
TCGTTCGAAGTTCTCTTTCTTGCCTTGTGATTTCCCTGGCTAGCTTCGTC
TTCTTTTTCCCTTTGGGCAATTCTTCCCTTAGGTTATGCTCCAACAGCTC
CTTCAAGGTTATCTTATCagccgaaaaaaaatctcataaacTGTTTGATG
ATTTCAAAACCATTATCAAAACTCCTGAGCAAGAGAAAAGCTTGATGGGA
TCATAATGGTTGTTCGATCAACCAAGACAAACATCAATCAACTACATTCA
ACAATGTTTGATCaaccatttttcttgaaatgtttcaaaatgttTGTTCA
ACCGTGCAAACATTATATAGGTTTTACAGCTACTTGCAAGCCATTCAAGT
GATCAAACAAACAGTTCGGTCTTAAACAATTCAACCAAAACTTCGTTCCT
CTCCTTCAGCATGAATTTCTGTACGTCTTTTGAATGTATTTCTAAAGTTT
GCTAAAATTGACACCACTTTAATCAACATTCATATGAAATGTCAATAATA
ACCACATCCACTTTTAAATACACAATTTCATTCATAATAATTCAACGTCA
AATGTCAGTAATAACCACATCCATTTCAAATGCACAATTCCATACGTAAT
AATCAATGTCAATAATGTTCAAGTTCAATTTCAATACGGTAAAACTCAAT
GGTAATGCAAATCAAACCAATGTCACTATTCGATGCTTTCCTGAACAATC
CCGGTTG

Coding sequence (CDS) from alignment at sc0000504:103415..105571+

>TCONS_00024588 ID=TCONS_00024588|Name=TCONS_00024588|organism=Clytia hemisphaerica|type=CDS|length=399bp|location=Sequence derived from alignment at sc0000504:103415..105571+ (Clytia hemisphaerica)
ATCAGAGGCAGTTTGAAAGACCCCGTTCGTTTGTCTGTTTTCGTATTTCG
TTTGAAAATGCACAATATGTGCATAGTGGCTTTCCACAGTTCATCACGTG
ACAACACCTCCGCCAACGGGAAGTTTGGTCCCCAAACTTTCAAAAGTACT
TTCATTATGGTCGGTCACACTTTTGTTCTGCGGCTATTTCCGTCGTGGGC
ACAAGTCGAACACTCCCAACGAATGCTTCAGAGACAGATTGGATGGGAGC
TCGCGACATTGCATCTACATCACTGTTCTTCGCTCCTCTCTTGTAGCGGA
TCTCGAAAGAATACTTCTGAAGCAGAACAGCCCATCTGGACAAGCGTCCA
CTCGAATCGCGGAATCGCAACGCATGAATCAGGGGTTGATGATCCGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013810XLOC_013810Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024588-proteinTCONS_00024588-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024588-exon-sc0000504-1491911889:103415..104382TCONS_00024588-exon-sc0000504-1491911889:103415..104382Clytia hemisphaericaexon
TCONS_00024588-exon-sc0000504-1510915933:103415..104382TCONS_00024588-exon-sc0000504-1510915933:103415..104382Clytia hemisphaericaexon
TCONS_00024588-exon-sc0000504-1575043694:103415..104382TCONS_00024588-exon-sc0000504-1575043694:103415..104382Clytia hemisphaericaexon
TCONS_00024588-exon-sc0000504-1491911889:104492..105571TCONS_00024588-exon-sc0000504-1491911889:104492..105571Clytia hemisphaericaexon
TCONS_00024588-exon-sc0000504-1510915933:104492..105571TCONS_00024588-exon-sc0000504-1510915933:104492..105571Clytia hemisphaericaexon
TCONS_00024588-exon-sc0000504-1575043694:104492..105571TCONS_00024588-exon-sc0000504-1575043694:104492..105571Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000504supercontigsc0000504:103415..105571 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.56844	2.08286	0.221998	0.257847	0	0.772	0.751049	0.751606	0	0	0	0	0	0	0	0.00983567	0	0.00323332	1.82554	2.57395	0	0	0	0.00135784
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024588 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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