TCONS_00024583 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024583
Unique NameTCONS_00024583
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2396

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024583 ID=TCONS_00024583|Name=TCONS_00024583|organism=Clytia hemisphaerica|type=transcript|length=2396bp
gttaATGGAGATGATGAATTCAAGTAAGGATCACTGCAACACGTGATTTT
CTAGAAGAATCTAGGAGAgaactttaaagaaaaagagCAGTTGGCAAATT
CACTTGTTATAAAAAGGCGAAATTCACTAATTGATTGGCGAATATCAGTT
GTATAGATAATTTTCTGAGACACGAGTGCAAAATTCTATGACACATTCTA
TGTTTGAATATTGATAAGAATCAAACGTCTGGGAGGTGTTGTTACAAAAA
GAGCAACTTtgatatatttgtttcaatgaTTTTCAGATGAGAGCTGATGA
GAGTAAAAATGTAAAGATTTTCAAGCGAGATTTCCTTGTTTCGTGTTTTC
GTCTGATTTAAAAGGAGGCAGAACTTGGAAACAAAAATGAGCGTTCAAAT
GTTGTTACAGTCAAGACCAAAAGCAGCACAACTCACACTTAAAGGTTTGA
GGAGAGGACGAAGCTATTCACTAGAAACGTCATCTCAACATCTACAAGCA
GCTGCATTGCAATCACCATTCGAAACTCTTGAAAGTGAAGAacgtcaaaa
gaagaaaaataaccaAACAACAGAGGTccaaaagaaagagaaaaaggtTT
CATTTTTGCACAATCAAAAGGTCAATTGGCTTGAAACCATTCTTGATAAC
AGCGAATATGAAAGAAGTATTACTCAGGAGATTGCAAACAAAACACAATT
CGTACCAAATATACCTTCAAAGCATCGTGTTAAACTGGACCATAGCGTCT
GCATCGGCGCCGACACGCCAGAAGGACGAGATTTGTTAGCGTCTACACTT
TACAAGGGAGAATATGGCAAGATTTTTTTCACATTATGGCAACAATATTT
AACACAAGCCGATTCACTAAATTGTGGACCTTCGTCTCTGGCCCTCGTTT
TGAACGCCCTGTGTATGGACCCAAAGCGACAGTGGAAATATCCGTGGCGT
TTTTATGATGAAGGTATCATGAACAAATGTGTACCTTGTAGTCATACAGC
TGTCAACGGCTGTTCAATGGATACGCTGATGTGTTTGGCAAAGAGCAATG
GATTGTCAGTGGAAGCTGTACGTGCTTCATTAGATTGGACAATGGATGAT
TTCAGGGAGGACGTGAAGCGTTCATGTTCATCACTTGACAATCCCATCAT
CCTGAACTTCTCACGTGGCGAATTAAATCAAACAGGGACTGGTCATTTCT
CCCCACTCGGTGCTTACAACGAAGAACATGACATGGTATTGGTGTTGGAG
ACTGCACGATTCaaatatccaccattttggaccAAGCTACCAATCATGTG
GAGAGCATTACAAGCAGAAGCTGTCGCTCCCAATAATGTGAAATCAGGAA
TGAGGCGTGGCTACATGATGCTCAAACAAACAGGACAGGGCGCGGCAACG
ACTACCAAAATACGGTTACCCTGGCAACAAGCACgtgttcaaatcaaaac
attatcAGATGACCCGAAAATCATGTTTTCGTTATATTTACTTAAACATT
TCAAATCGTTTTGGGAAAATTTCCTCGAAAGTTCCGCCAACAAGGATATG
AGTTGCAATTTGAGTATCAAGAAACATGACGTCATATCAGCATCTCTTAA
AGAAATTCTACGATTTTCGATTTCAGCCGAGAAAAGTGGTTACAAAACAA
CAGAGAAAGCATCTACTTGTGAAAAAACAGGATCGGAACCTCGGCCACAC
CCCTTTAATAAGTTTAACTTCCCACAAATTAAAATGACAAAGACTTTTCA
AATTGTTTCTGAACTTTTAAAAGAAGAACTACCGTCGAAGGTTGGTTCGC
TGGAGTCATTAGAACGCACGCTGATGACCGTTTTAGATTTAATAGAATTT
GAAGTGGAAGGAAAAGACATAATAATGGAAAATCCGAGCATAAATTCAGA
TCTGAATATCGAGAAAATGGCAAGTCTCTTATCAACATTGATTATTTTTT
GGCCTTACTCAACTAATCTTAAGCATGATGATACAAATACAAATGAACTG
ATAAGCGAGACAAACAGTGCTTTGTTAAGGGACGCTACACACAGTGACAG
GAAACTGTTCACGCATGCACGAAGAACAAGCGTGTCGGAGCAAAtcagtt
ttattttgaaagcgATTGATCACGTTGGTCATGAATTCACGTATCAAAAG
GACACAGAAGTTGActgaattttatttattttttctttatttttttgctg
tatatatatatttatttatttcatctCCATTTTCGACGATAATCTAAAGT
TACATTACATTTGACTGaatatttatttagtttttctccatttttgaGGA
TAACCTAAAGTTATATTTAATTTCtatgagaacaattttattagaacaat
gaGACTGTGAAATATCCTATAGCatgagaacaatttaagaacagag
Run BLAST on NCBI

transcript from alignment at sc0000504:73809..79163+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024583 ID=TCONS_00024583|Name=TCONS_00024583|organism=Clytia hemisphaerica|type=transcript|length=5355bp|location=Sequence derived from alignment at sc0000504:73809..79163+ (Clytia hemisphaerica)
gttaATGGAGATGATGAATTCAAGTAAGGATCACTGCAACACGTGATTTT
CTAGAAGAATCTAGGAGAgaactttaaagaaaaagagCAGTTGGCAAATT
CACTTGTTATAAAAAGGCGAAATTCACTAATTGATTGGCGAATATCAGTT
GTATAGATAATTTTCTGAGACACGAGTGCAAAATTCTATGACACATTCTA
TGTTTGAATATTGATAAGAATCAAACGTCTGGGAGGTGTTGTTACAAAAA
GAGCAACTTtgatatatttgtttcaatgaTTTTCAGATGAGAGCTGATGA
GAGTAAAAATGTAAAGATTTTCAAGCGAGATTTCCTTGTTTCGTGTTTTC
GTCTGATTTAAAAGGAGGCAGAACTTGGAAACAAAAATGAGCGTTCAAAT
GTTGTTACAGTCAAGACCAAAAGCAGCACAACTCACACTTAAAGGTAAGA
GTATAAAGTAATAAGTTGAAAATGAATGCTAGAATAAAACTTTTGTACTA
TTGTTCCGTTAGACTTCGACACAAAGTGAACATGGTTTATTTAGATGGTC
AGTATTGTGATAGACCAGCTCCTGAGTCGAGTGCGGGGTAGCACCATCTA
GAGTGGTAGTAattttctacacgtttttttttNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgaactgctcag
gctgagaataagtggatttgaaaataatgtaccttattgggactaatttg
accaaattttgatctttcaaggggcaaaaagttcaaaatttcccatgcag
taaggaactcgataaggaactttgagactgaaattcactgtaaaaataag
gaactccaggctcagagcaaagttaaggttccttgtaaaaaaaaacgtgt
atgcgaTTTTCGTGCTCCTCGAAATCTCTAGTTTATGGGATGAGCTGAAG
AGGTAAATAGCGTTTTAAGGGGGCTTTTGGACTCCAGACCTTTTAGTTCT
GACACCCAGTGATACAATCCTGAAGAAGACCTCCGCTAGGGTGGAAATAA
TGTTGTTCATATCATGATAAATGaccataatttccaaaaattcaattttg
tcaactttttacTGTGAAAAATTATAAATAGGAATAGTCACGTGAGCTTA
CCGCTTTTGCAGCAACCGGTATATATattctttataaagttttttaaaag
tttcaaagtcTTTGGATTTTCGGCTACTTTttcccattttcctaagaaat
cggatgttttagagactgcaaagcctaaaaatgttcttaacttgtgcTTA
ATATTTTGGCCATCAAAGCCTTGTGTTATACTCTCGGGTACCTAATAGCG
CCCCCCCCCGCTAATTAATTTTTCGAAAATTTTCCACCCAGGACATTCTT
ATTCTGCTGTATTAGCCTCCTTTTCAAAAGTTTTCCACCCAGGACATTTT
TATTCCACCCCCCCCCCCGCCTAttcagttttgagattttttcaaacccc
cgcttattccaaaccccccggctattaggtaccctaAAGTAGTttgtatt
cataaaaaaatgtctAGCGTAACTAGGAGAGAATTTCCTCATAAGTAAGT
AACTTTGCGACCGCAGTcaagggcgacccgaaggctcctttttctctagc
tgtctacccgaaggtatgggagggcaccactcctttccctggatttctcc
acttaccattgatccgtctctttagttactgagcatcaagcagagaggca
tcaagtaccattttgagaatctttagTATGACTCGgctgggggtcgaacc
cacaaccttgcgcactgtagttggatgctctaccttcatgctactaTCGC
TTTTTCCTTCATAAGTCCATGCCCCACATTGAAAACCTAATTCTGTAATC
CCTGGTTTCATTTGACAGGTTTGAGGAGAGGACGAAGCTATTCACTAGAA
ACGTCATCTCAACATCTACAAGCAGCTGCATTGCAATCACCATTCGAAAC
TCTTGAAAGTGAAGAacgtcaaaagaagaaaaataaccaAACAACAGAGG
TccaaaagaaagagaaaaaggtTTCATTTTTGCACAATCAAAAGGTCAAT
TGGCTTGAAACCATTCTTGATAACAGCGAATATGAAAGAAGTATTACTCA
GGAGATTGCAAACAAAACACAATTCGTACCAAATATACCTTCAAAGCATC
GTGTTAAACTGGACCATAGCGTCTGCATCGGCGCCGACACGCCAGAAGGA
CGAGATTTGTTAGCGTCTACACTTTACAAGGGAGAATATGGCAAGATTTT
TTTCACATTATGGCAACAATATTTAACACAAGCCGATTCACTAAATTGTG
GACCTTCGTCTCTGGCCCTCGTTTTGAACGCCCTGTGTATGGACCCAAAG
CGACAGTGGAAATATCCGTGGCGTTTTTATGATGAAGGTATCATGAACAA
ATGTGTACCTTGTAGTCATACAGCTGTCAACGGCTGTTCAATGGATACGC
TGATGTGTTTGGCAAAGAGCAATGGATTGTCAGTGGAAGCTGTACGTGCT
TCATTAGATTGGACAATGGATGATTTCAGGTAATATTTTGTAGATGGCAT
TACACACACATGTCTAACAGCCCCTGCTAAAACTTTTCCtttagtgggga
tgaaaatttatatcgaaatcccaatggaaatagaaattttatcgttttca
aagtttcaatgtggatggtttttgagtgcaatattttccattgaatttcc
aGTGGGAAGAGTTTCCCGGTGGGGCTGATATTATTTCCATCGGAGACGAT
ATTTTGGGCAATTTGGGGCGGGGGTCCCAGCGAGTCTGTTACATAGGGGT
GTCATCGTAATCTATGCGCGTAGTGTTTGTCTTAATATACTTGAATGGTA
GAAAAAGTCGCTTACATATCATTCAAGGACCCACAAAGTCGACTgggttt
tcacacaaacaccGGGGTCGAAAATATCCATGAAAAATATATCGCTCATC
ACTAGCGGCAAAAACTCGGGTTATTTTAAGTGCTATCGTATAAAACATTa
ggtcatgaatatcatgaatcgtccagaaataaaaaaaacaaaaaaacatt
catACCTATCAATTGATTCTTCCTTTCCGTAGGGAGGACGTGAAGCGTTC
ATGTTCATCACTTGACAATCCCATCATCCTGAACTTCTCACGTGGCGAAT
TAAATCAAACAGGGACTGGTCATTTCTCCCCACTCGGTGCTTACAACGAA
GAACATGACATGGTATTGGTGTTGGAGACTGCACGATTCaaatatccacc
attttggaccAAGCTACCAATCATGTGGAGAGCATTACAAGCAGAAGCTG
TCGCTCCCAATAATGTGAAATCAGGTATGGATGATTATCTTCATTACTCA
CGATTTCAAATTCCAGGTTTTTAGTCTAAGAAGGAAAATAGATTCTACAT
AGTAAATTAGCGTATAATTCGGTGatttatgcaaaattttgaGACGGAAA
CCGGGAAACCCCTGTTAACATATTTCTCTGAGAATGAAATCCGCTTGAGA
CGTGTAGGAATATTCATCACTTCAATTTCATAACATAGCAAATGTAATGA
ACACTAGATAGGCGGCTGAACTTCTACCTTGCCTCTGCTCTTTGCTGTTG
AAAGTTGAACTTGGTTACTCTAGTTTAGCCGGTCGAAGTCGAAGTTAGCA
ATAACAATCTTCGCTTgataaagattgaaaaaaaccattacattgacttt
agacagctaATTTTATAGCCCCCCtgtaatttcaaatttgaataggcagg
gcaaaaagtggaTCGTTTAAACTAGGACTAAATCATGTCGATCTTTGAAA
GTCAACATTTAGTCGACATTTTCTCCAGATTTTGGCGAAGACGAGACAGA
ATAACGACAGACTTTCAGAAAGGttaaataggtttaaacatTATGGTCTA
TCCTCTTGGGCATTAGAAACTAAGTAcaaaattttctaatgaaaatgaat
aaaatttcgTCCCTTTTGTCTTTAAGGGTtaacaagaaaaattttagttt
tagatttaaagtaaaaataatgacATTTAATTAACCCATAGGAATGAGGC
GTGGCTACATGATGCTCAAACAAACAGAACAGGGCGCNCATTTAATTAAC
CCATAGGAATGAGGCGTGGCTACATGATGCTCAAACAAACAGGACAGGGC
GCGGCAACGACTACCAAAATACGGTTACCCTGGCAACAAGCACgtgttca
aatcaaaacattatcAGATGACCCGAAAATCATGTTTTCGTTATATTTAC
TTAAACATTTCAAATCGTTTTGGGAAAATTTCCTCGAAAGTTCCGCCAAC
AAGGATATGAGTTGCAATTTGAGTATCAAGAAACATGACGTCATATCAGC
ATCTCTTAAAGAAATTCTACGATTTTCGATTTCAGCCGAGAAAAGTGGTT
ACAAAACAACAGAGAAAGCATCTACTTGTGAAAAAACAGGATCGGAACCT
CGGCCACACCCCTTTAATAAGTTTAACTTCCCACAAATTAAAATGACAAA
GACTTTTCAAATTGTTTCTGAACTTTTAAAAGAAGAACTACCGTCGAAGG
TTGGTTCGCTGGAGTCATTAGAACGCACGCTGATGACCGTTTTAGATTTA
ATAGAATTTGAAGTGGAAGGAAAAGACATAATAATGGAAAATCCGAGCAT
AAATTCAGATCTGAATATCGAGAAAATGGCAAGTCTCTTATCAACATTGA
TTATTTTTTGGCCTTACTCAACTAATCTTAAGCATGATGATACAAATACA
AATGAACTGATAAGCGAGACAAACAGTGCTTTGTTAAGGGACGCTACACA
CAGTGACAGGAAACTGTTCACGCATGCACGAAGAACAAGCGTGTCGGAGC
AAAtcagttttattttgaaagcgATTGATCACGTTGGTCATGAATTCACG
TATCAAAAGGACACAGAAGTTGActgaattttatttattttttctttatt
tttttgctgtatatatatatttatttatttcatctCCATTTTCGACGATA
ATCTAAAGTTACATTACATTTGACTGaatatttatttagtttttctccat
ttttgaGGATAACCTAAAGTTATATTTAATTTCtatgagaacaattttat
tagaacaatgaGACTGTGAAATATCCTATAGCatgagaacaatttaagaa
cagag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013808XLOC_013808Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024583-exon-sc0000504-1491911889:73809..74252TCONS_00024583-exon-sc0000504-1491911889:73809..74252Clytia hemisphaericaexon
TCONS_00024583-exon-sc0000504-1510915933:73809..74252TCONS_00024583-exon-sc0000504-1510915933:73809..74252Clytia hemisphaericaexon
TCONS_00024583-exon-sc0000504-1575043694:73809..74252TCONS_00024583-exon-sc0000504-1575043694:73809..74252Clytia hemisphaericaexon
TCONS_00024583-exon-sc0000504-1491911889:75877..76537TCONS_00024583-exon-sc0000504-1491911889:75877..76537Clytia hemisphaericaexon
TCONS_00024583-exon-sc0000504-1510915933:75877..76537TCONS_00024583-exon-sc0000504-1510915933:75877..76537Clytia hemisphaericaexon
TCONS_00024583-exon-sc0000504-1575043694:75877..76537TCONS_00024583-exon-sc0000504-1575043694:75877..76537Clytia hemisphaericaexon
TCONS_00024583-exon-sc0000504-1491911889:77091..77332TCONS_00024583-exon-sc0000504-1491911889:77091..77332Clytia hemisphaericaexon
TCONS_00024583-exon-sc0000504-1510915933:77091..77332TCONS_00024583-exon-sc0000504-1510915933:77091..77332Clytia hemisphaericaexon
TCONS_00024583-exon-sc0000504-1575043694:77091..77332TCONS_00024583-exon-sc0000504-1575043694:77091..77332Clytia hemisphaericaexon
TCONS_00024583-exon-sc0000504-1491911889:78115..79163TCONS_00024583-exon-sc0000504-1491911889:78115..79163Clytia hemisphaericaexon
TCONS_00024583-exon-sc0000504-1510915933:78115..79163TCONS_00024583-exon-sc0000504-1510915933:78115..79163Clytia hemisphaericaexon
TCONS_00024583-exon-sc0000504-1575043694:78115..79163TCONS_00024583-exon-sc0000504-1575043694:78115..79163Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000504supercontigsc0000504:73809..79163 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0761834	0.145374	0.187247	0.237484	1.6702	1.21009	11.0372	12.0548	7.63385	8.12059	4.89873	4.31008	2.90219	1.99894	1.74096	1.13946	3.2454	3.66571	4.05524	2.60556	3.25202	3.61774	1.44967	2.3883	4.86506	4.08734	1.80187	1.71146	0.0942923	0.133418
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024583 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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