TCONS_00024577 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024577
Unique NameTCONS_00024577
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length847

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024577 ID=TCONS_00024577|Name=TCONS_00024577|organism=Clytia hemisphaerica|type=transcript|length=847bp
NCACGATACACCATCTATAAATTATATACTCATCAAGAAGACAACCCTGT
GGTCGTTGCTTATATCAAGAAATTGgataaaaaagaagattttgatgttt
tgctGGAGAAAGAAGTTCAAATCGAAGtggaatttgataaacagcaTGTG
CTTTTATGCAGTAAGGTTTACTTGCAAGGAGCTTGTAGACTCTTCAGAGA
GGGATCACCATTGGTCGAAGGATTTCCAAAGAACTGGGGAGCATATACGA
AATCCTTATTTATTCCTCCTGGTCTTCTAGTCAATGGTAAAATCGATCCC
AGTCTGTTCAAAACATTGACCATGACAGCTAAAGAACCCGTACGTCTTGG
ACCTCTTATCGGGCTAGGTGTTTTCTctgatgaaaaattgaccaaagtGA
AGGATTTGAGAGTGAATAAATATTTAGCTGGCAAAAATCGAAACATGGTT
ATTATATGCAAGGGAGCAGAGGATGACTGGTGTCAGAAAGTAGAAGACAT
GACTGGAGAACAAGAATTGGATCAACTTGGAGGACGTGATTTCACACAGC
CGTCATCTATCCTCATTCCTGATGGTTTTGAGGTTATCTTGATTGGAGAC
AATAACGTATTGGGACCTGTTTACGGACACCAAGTTCTCAAATCATCAAA
AACTTCCAAAATCTGTGGTGGTGCCAAATGGAAATATATCATTGCTAGAA
GAGTAGACCCCGAGAAGAAATCATCAGCACAAAAAGTGGTTGCttgtgaa
gaaaaaaatttcggtGGTTTTTGTATACAAATGGGATCTGAATTTCTCAG
TGGTACTGATTTTAAACCGGTGTCTATTACAGATGTACCATCAACAT
Run BLAST on NCBI

transcript from alignment at sc0000504:38510..42847+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024577 ID=TCONS_00024577|Name=TCONS_00024577|organism=Clytia hemisphaerica|type=transcript|length=4338bp|location=Sequence derived from alignment at sc0000504:38510..42847+ (Clytia hemisphaerica)
NCACGATACACCATCTATAAATTATATACTCATCAACCTATCTTTCTTTA
GGTGCTATCAGAGAGCCTCTTGAATTTGGTTGCAGAATCACAAAAACttg
atcaaaaagttttgaagtttttaacaaAACCATTGGAGAATCCAGCAGCA
CGATACACCATCTATAAATTATATACACATCAAGAAGACAACCCTGTGGT
CGTTGCTTATATCAAGAAATTGgataaaaaagaagattttgatgttttgc
tGGAGAAAGAAGTTCAAATCGAAGtggaatttgataaacagcaTGTGCTT
TTATGCAGTAAGGTTTACTTGCAAGGAGCTTGTAGACTCTTCAGAGAGGT
AAGGTCTCTTCTTCGCTGATGGATAAAcgtttgttttataagaatggtgt
tttccatttcatctaggatattcttaacttacGGGGAAGATATACTATGA
AATAAACTAAAGAGAGTGAATTCTAATTATATATTTCCAATTATTTTTGA
TGTGTATGATTAATGTGACGaacgatttttgaaattctgtgtTCTAGGGG
TTAATTTAGCGATGTATGTTaaaattcgctaaaattaaaCCAATGAAGGT
ATAAATTCATAATATTGATGACGTAATGTTTCTTATGTAAGTACCCAAAA
CAGGCCGGGCGTTTGCAActagttttattgtttcaatacaaaatttgtgg
caaatacaccttttcgaccgtggctgctaattgccgcgcgggcatttttt
accaccctaaaactgtcctagtctttttttcgcgcctgaagacaatagaa
aaaagtgtaaaaaaaggattggatcgagtttagggtgataaaaaatgccc
gcgcggcaattggcggctacggtcgaaaaggtgtatagcaGGTCTTTTTT
TGGGTACTATCgtcataggcggttttagaccctgTCGAACCTATCAGATG
AAGAGGTTTGTAATGATGGTAATTTCATTATTtctaacgagcgttgcact
ccttcgcatgtttccgacgtacttacTCTCATTCTACGTAATGAATACAC
CAATTGTTCTCTTTTTCTAGGGATCACCATTGGTCGAAGGATTTCCAAAG
AACTGGGGAGCATATACGAAATCCTTATTTATTCCTCCTGGTCTTCTAGT
CAATGGTAAAATCGATCCCAGTCTGTTCAAAACATTGACCATGACAGCTA
AAGAACCCGTACGTCTTGGACCTCTTATCGGGCTAGGTGTTTTCTctgat
gaaaaattgaccaaagtGAAGGATTTGAGAGTGAATAAATATTTAGCTGG
CAAAAATCGAAACATGGTTATTATATGCAAGGGAGCAGGTTAGTGAATTT
TTGTTTGGAAAGCAAATTCAACGGTAGGGTTTAACCCTTAGACTATGAAG
GACGCGTATATGCGTCCAGAGCAAGCTAAAATACTGAGTCTCAGTCTTAA
GGCCATAGCTCTTGatcacttgatttaaaggggcataaacctgaatgctt
ttagaaagagtataaaaatagctttccaatggtaccaaaaccatcttcta
aatcaaaagttacaagcttttatagcactttaaagttttgagtttcaaaa
aagaaaaatagaaaaatttaaattttttccaaaaaaagggttAATGCAAC
GCGGTTTGAATATTGTCAATAGAATAAAGAGCATGGTCGGATCGTTTTAT
TTTCCGAGGttgatatattttttaactattgatattcataatatgcacca
ctggagagttttctgagaacttttaaaatcttccacccaatacgtcactt
aaaaaatagaaaaagtgacgtactGGGTTGGAAATTTTCGAAGTTCTTAG
AAGACTCTCTagtggtgtatatcatgaattgataatacagttgacgctct
ccaattggattttcatcgaataagggagcttatcgaataagggagcgtcg
tttagaagagtttcttgttgacggggactttaaatttcatcgaataaggg
agcctatcgaatagtagaacgtcgaattagagagcgtcaccTGTATAATC
AAAATCCGTGTCAGAGAGTGGTCGATAAAATTTGGAGTTCGTTGCAGTGG
AATGAAAATGTAACGTCACTCAGCAAAACGACTGTAGATTGGCCATTGTA
AAtggaaaattgaaatgaaatgaaattcagCCTTCTTGCTTGCATTTCCT
GACCAGGTTTGAATTGATTCCCTTATCGGAGAATTTCCTTTCACTGGTCC
TTATTTTACGCCAGCTCTATTTACGACACTACACATTTTTGGGCTCGCGT
CAAAAAGACCTTTAAAAACACTTAGTCATTTAAAATTTGCTACCTAATCA
TTGGCGTTTGTTTTCCTCAGAACCGGGATATGGGCGAGCgtaaaaatagc
ctaaattttagattttagccAAAAAGTGGCGTAGTTTTCGCATTGTTTAT
TGCAATAGGTTTTTACGATTTGCGCAAGTCAAGAAGATTCCTATAGGAAG
AAGAACGTTGATATAATCTCTCATCTTTTATACGAAGGTCCAAAATTGTT
GAAGCCTTCAgacgtttttttcataattttaagcCTATAAATGTTCCCAA
AATGTTCctaaataaattattttggNACTTGCTAAGAGAATAAAGAGCAT
GGTCAGATTGTTTTATGTTCCAAGGTTGATATTATTTTTAACAATTGAAG
CCTGtcctatatagtttgttttgatatgaAAAAGACGTGTAATACAGTTG
tatctctaattcgatcttcaagggaccaaaaattttcttcgaattagaga
aatattcgagttaaagaaagtGTTTCATACTACTTTCTAGCTGAGAGGAC
CCAATATTTGTGTTTGACTattagaggttcgaattagagagagttaactG
TGAATAtcagaggttcgaattagagagagtacCATGCTTCTATTTCTGGA
TATTTTAGAGGATGACTGGTGTCAGAAAGTAGAAGACATGACTGGAGAAC
AAGAATTGGATCAACTTGGAGGACGTGATTTCACACAGCCGTCATCTATC
CTCATTCCTGATGGTTTTGAGGTATAGCTTAACATTTCAgtactacttta
ggcgtacaaactttcgcgagcagaaactttcacgaggtcaaaaaatcgcg
aaatttacgacaCTTATTTCCCGAATTTAACaagaaaatcgcgaaaatta
ctGCTCGccaaagtttgtacgcctaaactATCGActttaaaacttttatt
taatttttaaccatatgataaaaaaagttcttttccaggaagaaaaaaca
acaacattcaAAGCAAAACATAACGCCTCAGCACTTTCTGTATATTGATT
ATTTAAACCATGGaatgattgaaaaacaaaattgataCCCCTGAAAGGGT
AAGGATTCAAACGTCCCAGTttggaaaatgatgaaaagaTACCCAGTATA
ACCTTGATTAACATATTTATATTCAATATTATgcagatattcgacaagaa
aaaaaattcagatattgaaaaatattcactCGAGCTTGATGAAtttggct
cttccagaaaatgtccgtgcatgggggttggaggatatattgtccggggg
tagcgaaaaatcattaaaatttgccttgtccgagGGGTAGATTTGCTCTG
TCccggggtaatttgggttgtccgggggtcaactgatgcttgtccggggg
taaaacccgttgttcggggggccaaaagtcactttgtccgggggtagaTT
ACTGAatattgttatatcctccaccccccatattcaatttttttctggaa
aagccttaTTCGACGAAGCGTAGCTGACTCGATATCTTGTATAAAGGGAA
TTTTTTGgcagtttaaattttctttattaagaaaacttgttttatgagat
aaatttaaaaatatccgACAATGCGTTTCGCTCTTGAGTGGACGATAATC
TACatggtgtcccgaaaaaaatccTGTGTTAGAGCACGACTATAAGTAGC
TGTTCAGACACGGGACTTTCTTTCGAGACACTttatatttttactttatt
tttattttcaccatttttaatAGGTTATCTTGATTGGAGACAATAACGTA
TTGGGACCTGTTTACGGACACCAAGTTCTCAAATCATCAAAAACTTCCAA
AATCTGTGGTGGTGCCAAATGGAAATATATCATTGCTAGAAGAGTAGACC
CCGAGAAGAAATCATCAGCACAAAAAGTGGTTGCttgtgaagaaaaaaat
ttcggtGGTTTTTGTATACAAATGGGATCTGAATTTCTCAGTGGTACTGA
TTTTAAACCGGTGTCTATTACAGATGTACCATCAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013805XLOC_013805Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024577-exon-sc0000504-1491911889:38510..38540TCONS_00024577-exon-sc0000504-1491911889:38510..38540Clytia hemisphaericaexon
TCONS_00024577-exon-sc0000504-1510915933:38510..38540TCONS_00024577-exon-sc0000504-1510915933:38510..38540Clytia hemisphaericaexon
TCONS_00024577-exon-sc0000504-1575043694:38510..38540TCONS_00024577-exon-sc0000504-1575043694:38510..38540Clytia hemisphaericaexon
TCONS_00024577-exon-sc0000504-1491911889:38688..38857TCONS_00024577-exon-sc0000504-1491911889:38688..38857Clytia hemisphaericaexon
TCONS_00024577-exon-sc0000504-1510915933:38688..38857TCONS_00024577-exon-sc0000504-1510915933:38688..38857Clytia hemisphaericaexon
TCONS_00024577-exon-sc0000504-1575043694:38688..38857TCONS_00024577-exon-sc0000504-1575043694:38688..38857Clytia hemisphaericaexon
TCONS_00024577-exon-sc0000504-1491911889:39580..39847TCONS_00024577-exon-sc0000504-1491911889:39580..39847Clytia hemisphaericaexon
TCONS_00024577-exon-sc0000504-1510915933:39580..39847TCONS_00024577-exon-sc0000504-1510915933:39580..39847Clytia hemisphaericaexon
TCONS_00024577-exon-sc0000504-1575043694:39580..39847TCONS_00024577-exon-sc0000504-1575043694:39580..39847Clytia hemisphaericaexon
TCONS_00024577-exon-sc0000504-1491911889:41468..41580TCONS_00024577-exon-sc0000504-1491911889:41468..41580Clytia hemisphaericaexon
TCONS_00024577-exon-sc0000504-1510915933:41468..41580TCONS_00024577-exon-sc0000504-1510915933:41468..41580Clytia hemisphaericaexon
TCONS_00024577-exon-sc0000504-1575043694:41468..41580TCONS_00024577-exon-sc0000504-1575043694:41468..41580Clytia hemisphaericaexon
TCONS_00024577-exon-sc0000504-1491911889:42583..42847TCONS_00024577-exon-sc0000504-1491911889:42583..42847Clytia hemisphaericaexon
TCONS_00024577-exon-sc0000504-1510915933:42583..42847TCONS_00024577-exon-sc0000504-1510915933:42583..42847Clytia hemisphaericaexon
TCONS_00024577-exon-sc0000504-1575043694:42583..42847TCONS_00024577-exon-sc0000504-1575043694:42583..42847Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000504supercontigsc0000504:38510..42847 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0230672	0.0199721	0.0183167	0	0	0.0643124	0.101841	0.155153	0.0925622	0	0.0728291	0.202918	0	0	0.111734	25.0841	23.9216	0.212492	0.321001	8.21847	8.86193	9.84007	9.09626	25.9711	32.456	2.3489	0.664266	0	0.0272162
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024577 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top